Ggra8628.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8628.t1
Unique NameGgra8628.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:31302..32626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4956.XP_002498519.1
PFAMsMad3_BUB1_I,Mad3_BUB1_II,Pkinase
Max annot lvl4751|Fungi
KEGG koko:K02178,ko:K06680
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,map04110,map04111,map04113,map04114,map04914
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005815,GO:0005816,GO:0005856,GO:0006325,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007080,GO:0007088,GO:0007093,GO:0007094,GO:0007135,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008608,GO:0009892,GO:0009987,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010965,GO:0010997,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0023052,GO:0030071,GO:0030234,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031570,GO:0031577,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032837,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033597,GO:0034501,GO:0034502,GO:0034506,GO:0034613,GO:0035173,GO:0035174,GO:0035404,GO:0035556,GO:0036211,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044732,GO:0044774,GO:0044877,GO:0045132,GO:0045144,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051177,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0051754,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055105,GO:0055106,GO:0060255,GO:0061983,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070601,GO:0070727,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0071957,GO:0072370,GO:0072371,GO:0072395,GO:0072413,GO:0072416,GO:0072477,GO:0072480,GO:0072486,GO:0080090,GO:0098687,GO:0098772,GO:0098813,GO:0140013,GO:0140014,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903046,GO:1903047,GO:1903320,GO:1903321,GO:1904666,GO:1904667,GO:1905818,GO:1905819,GO:1990164,GO:1990298,GO:1990948,GO:2000816,GO:2001251
Evalue0.000175
EggNOG OGsKOG1166@1|root,KOG1166@2759|Eukaryota,38DN1@33154|Opisthokonta,3NVH0@4751|Fungi,3QPA0@4890|Ascomycota,3RT2W@4891|Saccharomycetes,3RZ5A@4893|Saccharomycetaceae
EC2.7.11.1
Descriptionto Saccharomyces cerevisiae BUB1 (YGR188C) and MAD3 (YJL013C)
COG categoryD
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8628Ggra8628Gracilaria gracilis GNS1m malegenetig00000196_pilon 31302..32626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8628.t1Ggra8628.t1Gracilaria gracilis GNS1m malepolypeptidetig00000196_pilon 31302..32626 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8628.t1.stop1Ggra8628.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000196_pilon 31302..31304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8628.t1.CDS1Ggra8628.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000196_pilon 31302..31389 -
Ggra8628.t1.CDS2Ggra8628.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000196_pilon 31480..31872 -
Ggra8628.t1.CDS3Ggra8628.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000196_pilon 32250..32626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8628.t1.exon1Ggra8628.t1.exon1Gracilaria gracilis GNS1m maleexontig00000196_pilon 31302..31389 -
Ggra8628.t1.exon2Ggra8628.t1.exon2Gracilaria gracilis GNS1m maleexontig00000196_pilon 31480..31872 -
Ggra8628.t1.exon3Ggra8628.t1.exon3Gracilaria gracilis GNS1m maleexontig00000196_pilon 32250..32626 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8628.t1.intron1Ggra8628.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000196_pilon 31390..31479 -
Ggra8628.t1.intron2Ggra8628.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000196_pilon 31873..32249 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8628.t1.start1Ggra8628.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000196_pilon 32624..32626 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8628.t1 ID=Ggra8628.t1|Name=Ggra8628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MRRDKLDVFSYMKRKRIGRSWMLFYEACAATLEAARQYGEVQNVYLLAKD
VNYRPQDKIAQPVREFECRMPVRKKQDQKKKLDAEAKKMDEAQREVARKE
RKTALAEPSVASSIENGGTSTAKTAAYIKMKAINVEDDLLLKIKNWINLP
HQMRTTKTQTKPQTFPVSSPDASRRGPSPVHKQNVDSYNRPPSPTINTKT
AMPDIGDILNSSFPIEQTDDAKFSVPVPPSLSLETEMPRKPTAIKILADE
EPPEYLRTWTVDQPSVQFIGDVPVNVEPDTMVKLP*
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spliced messenger RNA

>Ggra8628.t1 ID=Ggra8628.t1|Name=Ggra8628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000196_pilon:31302..32626- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACGAGATAAGCTTGATGTATTCAGTTACATGAAACGAAAGCGAAT
TGGCCGCTCTTGGATGCTGTTCTACGAGGCTTGTGCAGCCACTCTCGAGG
CAGCTCGACAATACGGCGAAGTGCAAAACGTCTATCTGCTTGCGAAGGAT
GTTAACTACCGTCCTCAGGATAAAATTGCGCAGCCCGTGAGGGAATTTGA
ATGTCGTATGCCTGTACGAAAGAAGCAGGATCAGAAGAAGAAACTGGATG
CCGAAGCGAAGAAGATGGACGAGGCGCAACGGGAGGTGGCACGCAAAGAA
AGGAAAACTGCTTTAGCTGAGCCATCAGTTGCATCCTCAATTGAGAATGG
TGGTACCAGTACTGCAAAAACTGCCGCATATATCAAGATGAAAGCTATCA
ACGTGGAGGATGATCTTCTATTGAAGATCAAGAATTGGATAAACCTTCCT
CACCAAATGCGAACCACGAAAACTCAAACAAAGCCACAAACTTTCCCGGT
TTCGTCACCTGACGCGTCTAGGCGAGGGCCATCCCCAGTACACAAGCAAA
ACGTAGACAGCTACAATCGCCCACCCTCGCCGACTATCAACACCAAGACC
GCTATGCCTGATATTGGCGACATCTTGAACAGTTCATTCCCAATTGAACA
GACTGATGATGCGAAGTTTTCCGTACCAGTGCCTCCATCACTCTCCCTCG
AAACTGAAATGCCTAGAAAGCCAACTGCGATCAAGATATTAGCAGATGAA
GAACCGCCCGAGTATCTCAGGACCTGGACTGTTGACCAACCATCCGTTCA
GTTCATTGGAGATGTTCCTGTGAATGTTGAACCGGATACCATGGTTAAGT
TGCCCTAG
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protein sequence of Ggra8628.t1

>Ggra8628.t1 ID=Ggra8628.t1|Name=Ggra8628.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MRRDKLDVFSYMKRKRIGRSWMLFYEACAATLEAARQYGEVQNVYLLAKD
VNYRPQDKIAQPVREFECRMPVRKKQDQKKKLDAEAKKMDEAQREVARKE
RKTALAEPSVASSIENGGTSTAKTAAYIKMKAINVEDDLLLKIKNWINLP
HQMRTTKTQTKPQTFPVSSPDASRRGPSPVHKQNVDSYNRPPSPTINTKT
AMPDIGDILNSSFPIEQTDDAKFSVPVPPSLSLETEMPRKPTAIKILADE
EPPEYLRTWTVDQPSVQFIGDVPVNVEPDTMVKLP*
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mRNA from alignment at tig00000196_pilon:31302..32626-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8628.t1 ID=Ggra8628.t1|Name=Ggra8628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1325bp|location=Sequence derived from alignment at tig00000196_pilon:31302..32626- (Gracilaria gracilis GNS1m male)
ATGAGACGAGATAAGCTTGATGTATTCAGTTACATGAAACGAAAGCGAAT
TGGCCGCTCTTGGATGCTGTTCTACGAGGCTTGTGCAGCCACTCTCGAGG
CAGCTCGACAATACGGCGAAGTGCAAAACGTCTATCTGCTTGCGAAGGAT
GTTAACTACCGTCCTCAGGATAAAATTGCGCAGCCCGTGAGGGAATTTGA
ATGTCGTATGCCTGTACGAAAGAAGCAGGATCAGAAGAAGAAACTGGATG
CCGAAGCGAAGAAGATGGACGAGGCGCAACGGGAGGTGGCACGCAAAGAA
AGGAAAACTGCTTTAGCTGAGCCATCAGTTGCATCCTCAATTGAGAATGG
TGGTACCAGTACTGCAAAAACTGCCGCGTTCGACCGGCACTGGGATACAT
ATCGGAGCGTGAAGCGGTTACTGGACTTCGACCTTTCACTTCATGTGCGT
CCATTTCTGCGAGGGAGCTCCAACAACCGCAATCTATCCATGAGCCAAAA
TAGGGGCAAGCAAACAAAGAGAACAAGTTTCAGATATATAGCGATCATTC
AGAGCCTTACACGGAGTCTAAATCGAAGCCTGACGAAGAACAAGACATTA
AATTTGACGTCCTGGCCAAAATCGTTGACATTGGAAAGGAATAACATGGT
CGTCTTCCATCCCAACGGCTGGTTAGAATATCCCGAAAAACGACGCTGCG
GCTGAAAAGGTGAAGAAAAGATGTCTTTGCTCTCGACAAATATCTCCATT
TTAGATATATCAAGATGAAAGCTATCAACGTGGAGGATGATCTTCTATTG
AAGATCAAGAATTGGATAAACCTTCCTCACCAAATGCGAACCACGAAAAC
TCAAACAAAGCCACAAACTTTCCCGGTTTCGTCACCTGACGCGTCTAGGC
GAGGGCCATCCCCAGTACACAAGCAAAACGTAGACAGCTACAATCGCCCA
CCCTCGCCGACTATCAACACCAAGACCGCTATGCCTGATATTGGCGACAT
CTTGAACAGTTCATTCCCAATTGAACAGACTGATGATGCGAAGTTTTCCG
TACCAGTGCCTCCATCACTCTCCCTCGAAACTGAAATGCCTAGAAAGCCA
ACTGCGATCAAGATATTAGCAGATGAAGAACCGCCCGAGTATCTCAGGTA
GGAGGATAAGAGAGGGATGTCACCTGTGCACAATTCACACGCAGGGCCAA
CCGGATACGATGAATTGGAGCTTACCAAATACCTCAGGACCTGGACTGTT
GACCAACCATCCGTTCAGTTCATTGGAGATGTTCCTGTGAATGTTGAACC
GGATACCATGGTTAAGTTGCCCTAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:31302..32626-

>Ggra8628.t1 ID=Ggra8628.t1|Name=Ggra8628.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000196_pilon:31302..32626- (Gracilaria gracilis GNS1m male)
ATGAGACGAGATAAGCTTGATGTATTCAGTTACATGAAACGAAAGCGAAT
TGGCCGCTCTTGGATGCTGTTCTACGAGGCTTGTGCAGCCACTCTCGAGG
CAGCTCGACAATACGGCGAAGTGCAAAACGTCTATCTGCTTGCGAAGGAT
GTTAACTACCGTCCTCAGGATAAAATTGCGCAGCCCGTGAGGGAATTTGA
ATGTCGTATGCCTGTACGAAAGAAGCAGGATCAGAAGAAGAAACTGGATG
CCGAAGCGAAGAAGATGGACGAGGCGCAACGGGAGGTGGCACGCAAAGAA
AGGAAAACTGCTTTAGCTGAGCCATCAGTTGCATCCTCAATTGAGAATGG
TGGTACCAGTACTGCAAAAACTGCCGCATATATCAAGATGAAAGCTATCA
ACGTGGAGGATGATCTTCTATTGAAGATCAAGAATTGGATAAACCTTCCT
CACCAAATGCGAACCACGAAAACTCAAACAAAGCCACAAACTTTCCCGGT
TTCGTCACCTGACGCGTCTAGGCGAGGGCCATCCCCAGTACACAAGCAAA
ACGTAGACAGCTACAATCGCCCACCCTCGCCGACTATCAACACCAAGACC
GCTATGCCTGATATTGGCGACATCTTGAACAGTTCATTCCCAATTGAACA
GACTGATGATGCGAAGTTTTCCGTACCAGTGCCTCCATCACTCTCCCTCG
AAACTGAAATGCCTAGAAAGCCAACTGCGATCAAGATATTAGCAGATGAA
GAACCGCCCGAGTATCTCAGGACCTGGACTGTTGACCAACCATCCGTTCA
GTTCATTGGAGATGTTCCTGTGAATGTTGAACCGGATACCATGGTTAAGT
TGCCCTAG
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