Ggra857.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra857.t1
Unique NameGgra857.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:255408..256052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1192034.CAP_4226
PFAMsAmidase_3,Glucosaminidase,Glyco_hydro_19,PG_binding_1,SLT,TMP_2,VanY
Max annot lvl2|Bacteria
Evalue4.97e-46
EggNOG OGsCOG1876@1|root,COG1876@2|Bacteria
DescriptionD-alanyl-D-alanine carboxypeptidase
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra857Ggra857Gracilaria gracilis GNS1m malegenetig00000178_pilon 255408..256052 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra857.t1.stop1Ggra857.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000178_pilon 255408..255410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra857.t1.CDS1Ggra857.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000178_pilon 255408..256052 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra857.t1.exon1Ggra857.t1.exon1Gracilaria gracilis GNS1m maleexontig00000178_pilon 255408..256052 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra857.t1.start1Ggra857.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000178_pilon 256050..256052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra857.t1Ggra857.t1Gracilaria gracilis GNS1m malepolypeptidetig00000178_pilon 255408..256052 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra857.t1 ID=Ggra857.t1|Name=Ggra857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MKLLIILLPLSIKVFHISACTLGTATGCSTDVASGLTTQLIDELNSMGIS
FVSLDDRDRFRCSSPCVPYLQQSAKDALEAATLEKNDFITLNSAYRSSAQ
QYLLYQWFLDDQCNIPAAARPGRSRHEDGLAIDVRSYSFWRSTLEQFSWD
WFGSRDRVHFTFVGSDSSSGVRRKSLEAFQRLWNRNNPADQIDEDGIYGP
NTAARLSRAPCDGW*
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spliced messenger RNA

>Ggra857.t1 ID=Ggra857.t1|Name=Ggra857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000178_pilon:255408..256052- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTCTCATCATTTTGCTTCCTCTCTCTATCAAAGTTTTCCACAT
CTCTGCATGCACTTTGGGCACGGCGACCGGCTGTTCTACAGACGTTGCAT
CCGGTCTAACTACCCAACTCATTGACGAACTCAACTCCATGGGCATCAGT
TTCGTATCTCTAGATGACAGAGATCGTTTCCGATGTTCATCTCCATGCGT
TCCCTATCTGCAGCAAAGTGCCAAGGATGCTCTCGAAGCTGCCACGCTGG
AGAAGAACGATTTCATCACCTTAAATTCCGCATATCGCAGCAGTGCACAG
CAATATCTATTGTATCAATGGTTCTTGGATGACCAGTGTAATATCCCAGC
TGCTGCTCGTCCCGGACGCTCGCGCCATGAGGACGGTTTGGCTATTGATG
TTCGCTCATACAGCTTTTGGAGGTCGACCCTTGAACAATTTTCTTGGGAT
TGGTTTGGAAGTAGAGATCGAGTGCATTTCACTTTTGTTGGTTCCGATTC
TAGTAGTGGGGTTCGTAGAAAGAGTTTGGAAGCATTTCAAAGGTTGTGGA
ACAGAAACAACCCTGCAGATCAGATTGATGAGGATGGTATTTATGGACCT
AACACGGCTGCGAGGTTATCTAGAGCTCCGTGTGATGGGTGGTAG
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protein sequence of Ggra857.t1

>Ggra857.t1 ID=Ggra857.t1|Name=Ggra857.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MKLLIILLPLSIKVFHISACTLGTATGCSTDVASGLTTQLIDELNSMGIS
FVSLDDRDRFRCSSPCVPYLQQSAKDALEAATLEKNDFITLNSAYRSSAQ
QYLLYQWFLDDQCNIPAAARPGRSRHEDGLAIDVRSYSFWRSTLEQFSWD
WFGSRDRVHFTFVGSDSSSGVRRKSLEAFQRLWNRNNPADQIDEDGIYGP
NTAARLSRAPCDGW*
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mRNA from alignment at tig00000178_pilon:255408..256052-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra857.t1 ID=Ggra857.t1|Name=Ggra857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000178_pilon:255408..256052- (Gracilaria gracilis GNS1m male)
ATGAAGCTTCTCATCATTTTGCTTCCTCTCTCTATCAAAGTTTTCCACAT
CTCTGCATGCACTTTGGGCACGGCGACCGGCTGTTCTACAGACGTTGCAT
CCGGTCTAACTACCCAACTCATTGACGAACTCAACTCCATGGGCATCAGT
TTCGTATCTCTAGATGACAGAGATCGTTTCCGATGTTCATCTCCATGCGT
TCCCTATCTGCAGCAAAGTGCCAAGGATGCTCTCGAAGCTGCCACGCTGG
AGAAGAACGATTTCATCACCTTAAATTCCGCATATCGCAGCAGTGCACAG
CAATATCTATTGTATCAATGGTTCTTGGATGACCAGTGTAATATCCCAGC
TGCTGCTCGTCCCGGACGCTCGCGCCATGAGGACGGTTTGGCTATTGATG
TTCGCTCATACAGCTTTTGGAGGTCGACCCTTGAACAATTTTCTTGGGAT
TGGTTTGGAAGTAGAGATCGAGTGCATTTCACTTTTGTTGGTTCCGATTC
TAGTAGTGGGGTTCGTAGAAAGAGTTTGGAAGCATTTCAAAGGTTGTGGA
ACAGAAACAACCCTGCAGATCAGATTGATGAGGATGGTATTTATGGACCT
AACACGGCTGCGAGGTTATCTAGAGCTCCGTGTGATGGGTGGTAG
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Coding sequence (CDS) from alignment at tig00000178_pilon:255408..256052-

>Ggra857.t1 ID=Ggra857.t1|Name=Ggra857.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000178_pilon:255408..256052- (Gracilaria gracilis GNS1m male)
ATGAAGCTTCTCATCATTTTGCTTCCTCTCTCTATCAAAGTTTTCCACAT
CTCTGCATGCACTTTGGGCACGGCGACCGGCTGTTCTACAGACGTTGCAT
CCGGTCTAACTACCCAACTCATTGACGAACTCAACTCCATGGGCATCAGT
TTCGTATCTCTAGATGACAGAGATCGTTTCCGATGTTCATCTCCATGCGT
TCCCTATCTGCAGCAAAGTGCCAAGGATGCTCTCGAAGCTGCCACGCTGG
AGAAGAACGATTTCATCACCTTAAATTCCGCATATCGCAGCAGTGCACAG
CAATATCTATTGTATCAATGGTTCTTGGATGACCAGTGTAATATCCCAGC
TGCTGCTCGTCCCGGACGCTCGCGCCATGAGGACGGTTTGGCTATTGATG
TTCGCTCATACAGCTTTTGGAGGTCGACCCTTGAACAATTTTCTTGGGAT
TGGTTTGGAAGTAGAGATCGAGTGCATTTCACTTTTGTTGGTTCCGATTC
TAGTAGTGGGGTTCGTAGAAAGAGTTTGGAAGCATTTCAAAGGTTGTGGA
ACAGAAACAACCCTGCAGATCAGATTGATGAGGATGGTATTTATGGACCT
AACACGGCTGCGAGGTTATCTAGAGCTCCGTGTGATGGGTGGTAG
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