Ggra8493.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8493.t1
Unique NameGgra8493.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length181
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:878766..879478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704801.1
PFAMsAAA_33,PNK3P,zf-CCHH
Max annot lvl2759|Eukaryota
KEGG koko:K08073,ko:K19619
Evalue4.1e-41
EggNOG OGsCOG0241@1|root,KOG2134@2759|Eukaryota
EC2.7.1.78,3.1.3.32
DescriptionDNA-3'-diphospho-5'-guanosine diphosphatase
COG categoryE
BRITEko00000,ko01000,ko01009,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8493Ggra8493Gracilaria gracilis GNS1m malegenetig00000041_pilon 878766..879478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8493.t1Ggra8493.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 878766..879478 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8493.t1.start1Ggra8493.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 878766..878768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8493.t1.CDS1Ggra8493.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 878766..878874 +
Ggra8493.t1.CDS2Ggra8493.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 878960..879139 +
Ggra8493.t1.CDS3Ggra8493.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000041_pilon 879225..879478 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8493.t1.exon1Ggra8493.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 878766..878874 +
Ggra8493.t1.exon2Ggra8493.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 878960..879139 +
Ggra8493.t1.exon3Ggra8493.t1.exon3Gracilaria gracilis GNS1m maleexontig00000041_pilon 879225..879478 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8493.t1.intron1Ggra8493.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 878875..878959 +
Ggra8493.t1.intron2Ggra8493.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000041_pilon 879140..879224 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8493.t1.stop1Ggra8493.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 879476..879478 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8493.t1 ID=Ggra8493.t1|Name=Ggra8493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=181bp
MTEPPTKAQHFAELNAARREDGDLSPPRMLVLVGIPGSGKSTFAKHLSDV
GWARVSQDELGNRGRCEVKTVQHLRIGRNVVIDRCNFNKAQRKHWADFAK
ARGSACGVIVFATSLGECVKRVRNRTDHPTLKGDQDDEQVVKFMADEFVF
PDRTEGFAFCRVIRSEADEERVLTEILAAP*
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spliced messenger RNA

>Ggra8493.t1 ID=Ggra8493.t1|Name=Ggra8493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00000041_pilon:878766..879478+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAACCCCCCACTAAAGCGCAACACTTCGCCGAGCTTAACGCGGC
ACGTCGCGAAGACGGAGACTTGTCCCCGCCGCGCATGCTGGTACTTGTAG
GAATTCCAGGCTCTGGAAAGAGCACCTTTGCAAAGCATTTGAGCGACGTC
GGATGGGCGCGTGTGTCACAAGACGAGCTTGGTAACAGAGGAAGGTGCGA
AGTGAAAACGGTCCAGCACCTGCGAATTGGACGAAATGTCGTCATTGATC
GCTGCAACTTCAACAAGGCGCAACGAAAACATTGGGCAGATTTTGCCAAA
GCGAGAGGAAGCGCTTGTGGCGTGATTGTGTTTGCGACGTCTCTCGGGGA
ATGCGTGAAACGCGTGCGCAATAGAACTGATCATCCGACGCTGAAGGGCG
ACCAGGACGACGAACAGGTGGTGAAGTTTATGGCAGATGAGTTTGTGTTT
CCAGATCGCACTGAAGGGTTTGCGTTCTGTCGCGTCATCCGGTCGGAGGC
GGATGAAGAAAGAGTGCTGACGGAAATCTTGGCCGCGCCCTAA
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protein sequence of Ggra8493.t1

>Ggra8493.t1 ID=Ggra8493.t1|Name=Ggra8493.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=181bp
MTEPPTKAQHFAELNAARREDGDLSPPRMLVLVGIPGSGKSTFAKHLSDV
GWARVSQDELGNRGRCEVKTVQHLRIGRNVVIDRCNFNKAQRKHWADFAK
ARGSACGVIVFATSLGECVKRVRNRTDHPTLKGDQDDEQVVKFMADEFVF
PDRTEGFAFCRVIRSEADEERVLTEILAAP*
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mRNA from alignment at tig00000041_pilon:878766..879478+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8493.t1 ID=Ggra8493.t1|Name=Ggra8493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=713bp|location=Sequence derived from alignment at tig00000041_pilon:878766..879478+ (Gracilaria gracilis GNS1m male)
ATGACAGAACCCCCCACTAAAGCGCAACACTTCGCCGAGCTTAACGCGGC
ACGTCGCGAAGACGGAGACTTGTCCCCGCCGCGCATGCTGGTACTTGTAG
GAATTCCAGGTACGTCTGCACCACAACCCGACACAACCCGGCAACGTTAA
AACATCTACAACGCGCTAACAACAGACACAAAACGAACACGTAGGCTCTG
GAAAGAGCACCTTTGCAAAGCATTTGAGCGACGTCGGATGGGCGCGTGTG
TCACAAGACGAGCTTGGTAACAGAGGAAGGTGCGAAGTGAAAACGGTCCA
GCACCTGCGAATTGGACGAAATGTCGTCATTGATCGCTGCAACTTCAACA
AGGCGCAACGAAAACATTGGGCAGGTACGTCAAACAGCAATCAATGAAAC
CGGGACATACACGCGAAATACGGGCCGCTGACAGGCGTGGTGAATCGTAC
TGCACGTAGATTTTGCCAAAGCGAGAGGAAGCGCTTGTGGCGTGATTGTG
TTTGCGACGTCTCTCGGGGAATGCGTGAAACGCGTGCGCAATAGAACTGA
TCATCCGACGCTGAAGGGCGACCAGGACGACGAACAGGTGGTGAAGTTTA
TGGCAGATGAGTTTGTGTTTCCAGATCGCACTGAAGGGTTTGCGTTCTGT
CGCGTCATCCGGTCGGAGGCGGATGAAGAAAGAGTGCTGACGGAAATCTT
GGCCGCGCCCTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:878766..879478+

>Ggra8493.t1 ID=Ggra8493.t1|Name=Ggra8493.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=543bp|location=Sequence derived from alignment at tig00000041_pilon:878766..879478+ (Gracilaria gracilis GNS1m male)
ATGACAGAACCCCCCACTAAAGCGCAACACTTCGCCGAGCTTAACGCGGC
ACGTCGCGAAGACGGAGACTTGTCCCCGCCGCGCATGCTGGTACTTGTAG
GAATTCCAGGCTCTGGAAAGAGCACCTTTGCAAAGCATTTGAGCGACGTC
GGATGGGCGCGTGTGTCACAAGACGAGCTTGGTAACAGAGGAAGGTGCGA
AGTGAAAACGGTCCAGCACCTGCGAATTGGACGAAATGTCGTCATTGATC
GCTGCAACTTCAACAAGGCGCAACGAAAACATTGGGCAGATTTTGCCAAA
GCGAGAGGAAGCGCTTGTGGCGTGATTGTGTTTGCGACGTCTCTCGGGGA
ATGCGTGAAACGCGTGCGCAATAGAACTGATCATCCGACGCTGAAGGGCG
ACCAGGACGACGAACAGGTGGTGAAGTTTATGGCAGATGAGTTTGTGTTT
CCAGATCGCACTGAAGGGTTTGCGTTCTGTCGCGTCATCCGGTCGGAGGC
GGATGAAGAAAGAGTGCTGACGGAAATCTTGGCCGCGCCCTAA
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