Ggra7898.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7898.t1
Unique NameGgra7898.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length408
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:277228..278451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704172.1
PFAMsRRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K12831
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000184,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0008022,GO:0008143,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0008494,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016458,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0030532,GO:0031047,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034655,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043487,GO:0043488,GO:0043489,GO:0043603,GO:0043604,GO:0043631,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045070,GO:0045182,GO:0045727,GO:0045934,GO:0045935,GO:0046483,GO:0046700,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0060211,GO:0060213,GO:0060255,GO:0061013,GO:0061014,GO:0065007,GO:0065008,GO:0070717,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0080090,GO:0090079,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902369,GO:1902373,GO:1902494,GO:1903311,GO:1903312,GO:1903313,GO:1903900,GO:1903902,GO:1990904,GO:2000112,GO:2000622,GO:2000623
Evalue2.17e-86
EggNOG OGsKOG0131@1|root,KOG0131@2759|Eukaryota
DescriptionRNA splicing
COG categoryS
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7898Ggra7898Gracilaria gracilis GNS1m malegenetig00000073_pilon 277228..278451 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7898.t1.start1Ggra7898.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 277228..277230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7898.t1.CDS1Ggra7898.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 277228..278451 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7898.t1.exon1Ggra7898.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 277228..278451 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7898.t1.stop1Ggra7898.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 278449..278451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7898.t1Ggra7898.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 277228..278451 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7898.t1 ID=Ggra7898.t1|Name=Ggra7898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp
MAGETAVHQSVFGWKVMSAPGAAKWLRFTGGFSSKSTGREGSKTLFGLKF
DRAALGCSRSTMAATLASNRNPTDRNADATVHIAQLDEKVTDALLWELMV
QAAPVRHVYIPRNRITGEHFGYGFCEFHTALDALYAAKVLNLVPLYSKPI
RISQSTVDRRTQDVGANLFIGNLVDEVDEKLLHDAFSAFGPLVEAPFIMR
DPNTNQSKRYGFVKYSSFEHSDAAIAAMNGQYVCNTPITVQYAFKKDSEK
RERHGSQAERILAAKGAEARRTADLENQLRPHTLFSDKPSRRVQADHPLP
PHPAAPYPPDARMPTYPPPSYAYPPQVRMPPNWTGGVPQQYAQSSQVNHY
PSPNVVAPSQIGWTQNRQYGSSNPANRPAPYPQQSAPNARAARPVPDEAA
PQYMQGR*
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spliced messenger RNA

>Ggra7898.t1 ID=Ggra7898.t1|Name=Ggra7898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000073_pilon:277228..278451+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGCGAGACGGCGGTACACCAATCCGTTTTCGGTTGGAAGGTGAT
GTCGGCGCCAGGCGCGGCCAAGTGGCTGCGCTTCACTGGTGGGTTTTCTT
CAAAAAGTACGGGCCGTGAAGGATCAAAGACATTGTTCGGACTGAAGTTC
GACCGTGCTGCTTTGGGCTGTTCGCGAAGCACAATGGCCGCAACTCTGGC
GAGCAATAGAAACCCCACGGACCGCAATGCCGATGCGACGGTGCATATCG
CGCAGCTCGATGAGAAAGTAACCGACGCGCTGCTGTGGGAGCTCATGGTG
CAAGCCGCCCCGGTCCGTCATGTGTACATCCCGCGTAATCGCATAACGGG
CGAGCATTTTGGGTACGGCTTCTGCGAGTTTCATACCGCGCTAGACGCCC
TGTACGCTGCAAAGGTCCTCAACCTCGTCCCGCTGTATTCAAAGCCCATT
CGAATCTCGCAATCCACAGTGGATCGCCGCACTCAAGACGTTGGAGCAAA
CCTTTTCATCGGAAATCTCGTTGATGAAGTCGACGAGAAACTGCTTCATG
ACGCTTTCTCGGCGTTTGGGCCGTTAGTAGAAGCTCCTTTCATTATGCGC
GATCCTAATACCAACCAATCGAAACGCTACGGTTTCGTCAAGTATTCCTC
TTTCGAACATTCTGATGCTGCAATAGCCGCCATGAATGGCCAATATGTCT
GTAACACGCCTATAACTGTTCAATACGCGTTTAAGAAGGACTCTGAGAAG
CGCGAGAGACATGGATCTCAAGCTGAACGAATTTTGGCAGCCAAAGGAGC
AGAAGCCCGTCGAACAGCTGACCTCGAGAATCAATTGCGTCCACACACTC
TTTTTTCGGACAAACCTTCACGACGAGTTCAAGCCGACCATCCACTTCCT
CCTCATCCTGCCGCACCATATCCACCAGATGCTCGAATGCCAACGTATCC
ACCCCCATCTTATGCCTATCCACCACAAGTTCGCATGCCTCCGAACTGGA
CGGGCGGAGTCCCACAGCAGTATGCACAATCTTCACAAGTGAATCATTAT
CCATCCCCAAATGTTGTGGCCCCATCGCAGATTGGATGGACTCAGAATCG
ACAATACGGCAGCTCCAACCCAGCCAACAGACCTGCTCCATATCCTCAGC
AATCTGCACCCAACGCTCGAGCCGCTAGACCTGTCCCCGACGAAGCTGCC
CCTCAGTACATGCAAGGAAGGTGA
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protein sequence of Ggra7898.t1

>Ggra7898.t1 ID=Ggra7898.t1|Name=Ggra7898.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=408bp
MAGETAVHQSVFGWKVMSAPGAAKWLRFTGGFSSKSTGREGSKTLFGLKF
DRAALGCSRSTMAATLASNRNPTDRNADATVHIAQLDEKVTDALLWELMV
QAAPVRHVYIPRNRITGEHFGYGFCEFHTALDALYAAKVLNLVPLYSKPI
RISQSTVDRRTQDVGANLFIGNLVDEVDEKLLHDAFSAFGPLVEAPFIMR
DPNTNQSKRYGFVKYSSFEHSDAAIAAMNGQYVCNTPITVQYAFKKDSEK
RERHGSQAERILAAKGAEARRTADLENQLRPHTLFSDKPSRRVQADHPLP
PHPAAPYPPDARMPTYPPPSYAYPPQVRMPPNWTGGVPQQYAQSSQVNHY
PSPNVVAPSQIGWTQNRQYGSSNPANRPAPYPQQSAPNARAARPVPDEAA
PQYMQGR*
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mRNA from alignment at tig00000073_pilon:277228..278451+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7898.t1 ID=Ggra7898.t1|Name=Ggra7898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000073_pilon:277228..278451+ (Gracilaria gracilis GNS1m male)
ATGGCTGGCGAGACGGCGGTACACCAATCCGTTTTCGGTTGGAAGGTGAT
GTCGGCGCCAGGCGCGGCCAAGTGGCTGCGCTTCACTGGTGGGTTTTCTT
CAAAAAGTACGGGCCGTGAAGGATCAAAGACATTGTTCGGACTGAAGTTC
GACCGTGCTGCTTTGGGCTGTTCGCGAAGCACAATGGCCGCAACTCTGGC
GAGCAATAGAAACCCCACGGACCGCAATGCCGATGCGACGGTGCATATCG
CGCAGCTCGATGAGAAAGTAACCGACGCGCTGCTGTGGGAGCTCATGGTG
CAAGCCGCCCCGGTCCGTCATGTGTACATCCCGCGTAATCGCATAACGGG
CGAGCATTTTGGGTACGGCTTCTGCGAGTTTCATACCGCGCTAGACGCCC
TGTACGCTGCAAAGGTCCTCAACCTCGTCCCGCTGTATTCAAAGCCCATT
CGAATCTCGCAATCCACAGTGGATCGCCGCACTCAAGACGTTGGAGCAAA
CCTTTTCATCGGAAATCTCGTTGATGAAGTCGACGAGAAACTGCTTCATG
ACGCTTTCTCGGCGTTTGGGCCGTTAGTAGAAGCTCCTTTCATTATGCGC
GATCCTAATACCAACCAATCGAAACGCTACGGTTTCGTCAAGTATTCCTC
TTTCGAACATTCTGATGCTGCAATAGCCGCCATGAATGGCCAATATGTCT
GTAACACGCCTATAACTGTTCAATACGCGTTTAAGAAGGACTCTGAGAAG
CGCGAGAGACATGGATCTCAAGCTGAACGAATTTTGGCAGCCAAAGGAGC
AGAAGCCCGTCGAACAGCTGACCTCGAGAATCAATTGCGTCCACACACTC
TTTTTTCGGACAAACCTTCACGACGAGTTCAAGCCGACCATCCACTTCCT
CCTCATCCTGCCGCACCATATCCACCAGATGCTCGAATGCCAACGTATCC
ACCCCCATCTTATGCCTATCCACCACAAGTTCGCATGCCTCCGAACTGGA
CGGGCGGAGTCCCACAGCAGTATGCACAATCTTCACAAGTGAATCATTAT
CCATCCCCAAATGTTGTGGCCCCATCGCAGATTGGATGGACTCAGAATCG
ACAATACGGCAGCTCCAACCCAGCCAACAGACCTGCTCCATATCCTCAGC
AATCTGCACCCAACGCTCGAGCCGCTAGACCTGTCCCCGACGAAGCTGCC
CCTCAGTACATGCAAGGAAGGTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:277228..278451+

>Ggra7898.t1 ID=Ggra7898.t1|Name=Ggra7898.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00000073_pilon:277228..278451+ (Gracilaria gracilis GNS1m male)
ATGGCTGGCGAGACGGCGGTACACCAATCCGTTTTCGGTTGGAAGGTGAT
GTCGGCGCCAGGCGCGGCCAAGTGGCTGCGCTTCACTGGTGGGTTTTCTT
CAAAAAGTACGGGCCGTGAAGGATCAAAGACATTGTTCGGACTGAAGTTC
GACCGTGCTGCTTTGGGCTGTTCGCGAAGCACAATGGCCGCAACTCTGGC
GAGCAATAGAAACCCCACGGACCGCAATGCCGATGCGACGGTGCATATCG
CGCAGCTCGATGAGAAAGTAACCGACGCGCTGCTGTGGGAGCTCATGGTG
CAAGCCGCCCCGGTCCGTCATGTGTACATCCCGCGTAATCGCATAACGGG
CGAGCATTTTGGGTACGGCTTCTGCGAGTTTCATACCGCGCTAGACGCCC
TGTACGCTGCAAAGGTCCTCAACCTCGTCCCGCTGTATTCAAAGCCCATT
CGAATCTCGCAATCCACAGTGGATCGCCGCACTCAAGACGTTGGAGCAAA
CCTTTTCATCGGAAATCTCGTTGATGAAGTCGACGAGAAACTGCTTCATG
ACGCTTTCTCGGCGTTTGGGCCGTTAGTAGAAGCTCCTTTCATTATGCGC
GATCCTAATACCAACCAATCGAAACGCTACGGTTTCGTCAAGTATTCCTC
TTTCGAACATTCTGATGCTGCAATAGCCGCCATGAATGGCCAATATGTCT
GTAACACGCCTATAACTGTTCAATACGCGTTTAAGAAGGACTCTGAGAAG
CGCGAGAGACATGGATCTCAAGCTGAACGAATTTTGGCAGCCAAAGGAGC
AGAAGCCCGTCGAACAGCTGACCTCGAGAATCAATTGCGTCCACACACTC
TTTTTTCGGACAAACCTTCACGACGAGTTCAAGCCGACCATCCACTTCCT
CCTCATCCTGCCGCACCATATCCACCAGATGCTCGAATGCCAACGTATCC
ACCCCCATCTTATGCCTATCCACCACAAGTTCGCATGCCTCCGAACTGGA
CGGGCGGAGTCCCACAGCAGTATGCACAATCTTCACAAGTGAATCATTAT
CCATCCCCAAATGTTGTGGCCCCATCGCAGATTGGATGGACTCAGAATCG
ACAATACGGCAGCTCCAACCCAGCCAACAGACCTGCTCCATATCCTCAGC
AATCTGCACCCAACGCTCGAGCCGCTAGACCTGTCCCCGACGAAGCTGCC
CCTCAGTACATGCAAGGAAGGTGA
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