Ggra6858.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6858.t1
Unique NameGgra6858.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:689980..690861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707836.1
PFAMsDHHC
Max annot lvl2759|Eukaryota
KEGG koko:K18932,ko:K20028
Evalue6.75e-18
EggNOG OGsCOG5273@1|root,KOG1315@2759|Eukaryota
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
COG categoryJ
BRITEko00000,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6858Ggra6858Gracilaria gracilis GNS1m malegenetig00000056_pilon 689980..690861 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6858.t1.stop1Ggra6858.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 689980..689982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6858.t1.CDS1Ggra6858.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 689980..690861 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6858.t1.exon1Ggra6858.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 689980..690861 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6858.t1.start1Ggra6858.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 690859..690861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6858.t1Ggra6858.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 689980..690861 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6858.t1 ID=Ggra6858.t1|Name=Ggra6858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MDGSHALPRALLRLERLLERLNWLLRTAYIALTLSLLLCATLVYARVLLP
LIFRTHSAPVALLHTAASAYLLLSVLLNYALCLLTPPGTPDAPPAHIVPA
PAPKGAAAVIRSQRWRFCGVCERHKPPRAHHCTLCNACFARLCHHCPALG
TCIARDNYPFFFRFVLSAAAGSALASATAAQLYARARRADALFAAAVGGA
ALAIALGSLCAWNAFLLATAQTTVEWLEGVALRRRADAPPAWGRFAGPFH
RGLRRNVDDAFGTVPSRFAPWWLVLVLPLPRLPSAFPPGLDEV*
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spliced messenger RNA

>Ggra6858.t1 ID=Ggra6858.t1|Name=Ggra6858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000056_pilon:689980..690861- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGCTCACACGCGCTGCCGCGCGCGCTGCTGCGGCTGGAGCGGCT
GCTGGAGCGGCTCAACTGGCTGCTTCGCACGGCGTACATCGCGCTCACGC
TGTCGCTGCTGCTGTGCGCCACGCTGGTGTACGCGCGCGTGCTGCTGCCG
CTCATCTTCCGCACGCACAGCGCGCCCGTCGCGCTGCTGCACACCGCCGC
CTCGGCCTACCTGCTGCTCAGCGTGCTGCTCAACTACGCGCTGTGTCTGC
TCACGCCGCCCGGCACGCCGGACGCGCCGCCCGCGCATATCGTCCCCGCG
CCCGCGCCCAAGGGCGCCGCCGCCGTCATCCGCAGCCAGCGCTGGCGCTT
CTGTGGCGTGTGCGAGCGGCACAAGCCGCCGCGCGCGCACCATTGCACGC
TGTGCAACGCGTGCTTCGCGCGGCTGTGTCACCACTGCCCCGCGCTGGGC
ACGTGCATTGCGCGCGACAACTACCCCTTCTTCTTCCGCTTCGTGCTGAG
CGCGGCGGCGGGCAGCGCGCTGGCATCCGCCACGGCCGCGCAGCTGTACG
CGCGTGCGCGGCGCGCCGACGCGCTGTTCGCGGCGGCGGTGGGCGGCGCC
GCGCTCGCCATCGCGCTCGGATCGCTGTGCGCGTGGAACGCCTTCCTGCT
CGCCACCGCGCAGACCACCGTCGAGTGGCTGGAGGGCGTGGCGCTGCGCC
GACGCGCCGACGCGCCGCCGGCGTGGGGCCGCTTCGCCGGCCCGTTTCAC
CGCGGGCTGCGCCGCAACGTCGACGACGCCTTCGGCACCGTTCCCAGCCG
CTTCGCGCCGTGGTGGCTGGTGCTGGTGCTGCCGCTGCCGCGCCTCCCGA
GCGCGTTTCCGCCCGGACTGGATGAGGTGTAA
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protein sequence of Ggra6858.t1

>Ggra6858.t1 ID=Ggra6858.t1|Name=Ggra6858.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MDGSHALPRALLRLERLLERLNWLLRTAYIALTLSLLLCATLVYARVLLP
LIFRTHSAPVALLHTAASAYLLLSVLLNYALCLLTPPGTPDAPPAHIVPA
PAPKGAAAVIRSQRWRFCGVCERHKPPRAHHCTLCNACFARLCHHCPALG
TCIARDNYPFFFRFVLSAAAGSALASATAAQLYARARRADALFAAAVGGA
ALAIALGSLCAWNAFLLATAQTTVEWLEGVALRRRADAPPAWGRFAGPFH
RGLRRNVDDAFGTVPSRFAPWWLVLVLPLPRLPSAFPPGLDEV*
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mRNA from alignment at tig00000056_pilon:689980..690861-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6858.t1 ID=Ggra6858.t1|Name=Ggra6858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000056_pilon:689980..690861- (Gracilaria gracilis GNS1m male)
ATGGACGGCTCACACGCGCTGCCGCGCGCGCTGCTGCGGCTGGAGCGGCT
GCTGGAGCGGCTCAACTGGCTGCTTCGCACGGCGTACATCGCGCTCACGC
TGTCGCTGCTGCTGTGCGCCACGCTGGTGTACGCGCGCGTGCTGCTGCCG
CTCATCTTCCGCACGCACAGCGCGCCCGTCGCGCTGCTGCACACCGCCGC
CTCGGCCTACCTGCTGCTCAGCGTGCTGCTCAACTACGCGCTGTGTCTGC
TCACGCCGCCCGGCACGCCGGACGCGCCGCCCGCGCATATCGTCCCCGCG
CCCGCGCCCAAGGGCGCCGCCGCCGTCATCCGCAGCCAGCGCTGGCGCTT
CTGTGGCGTGTGCGAGCGGCACAAGCCGCCGCGCGCGCACCATTGCACGC
TGTGCAACGCGTGCTTCGCGCGGCTGTGTCACCACTGCCCCGCGCTGGGC
ACGTGCATTGCGCGCGACAACTACCCCTTCTTCTTCCGCTTCGTGCTGAG
CGCGGCGGCGGGCAGCGCGCTGGCATCCGCCACGGCCGCGCAGCTGTACG
CGCGTGCGCGGCGCGCCGACGCGCTGTTCGCGGCGGCGGTGGGCGGCGCC
GCGCTCGCCATCGCGCTCGGATCGCTGTGCGCGTGGAACGCCTTCCTGCT
CGCCACCGCGCAGACCACCGTCGAGTGGCTGGAGGGCGTGGCGCTGCGCC
GACGCGCCGACGCGCCGCCGGCGTGGGGCCGCTTCGCCGGCCCGTTTCAC
CGCGGGCTGCGCCGCAACGTCGACGACGCCTTCGGCACCGTTCCCAGCCG
CTTCGCGCCGTGGTGGCTGGTGCTGGTGCTGCCGCTGCCGCGCCTCCCGA
GCGCGTTTCCGCCCGGACTGGATGAGGTGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:689980..690861-

>Ggra6858.t1 ID=Ggra6858.t1|Name=Ggra6858.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000056_pilon:689980..690861- (Gracilaria gracilis GNS1m male)
ATGGACGGCTCACACGCGCTGCCGCGCGCGCTGCTGCGGCTGGAGCGGCT
GCTGGAGCGGCTCAACTGGCTGCTTCGCACGGCGTACATCGCGCTCACGC
TGTCGCTGCTGCTGTGCGCCACGCTGGTGTACGCGCGCGTGCTGCTGCCG
CTCATCTTCCGCACGCACAGCGCGCCCGTCGCGCTGCTGCACACCGCCGC
CTCGGCCTACCTGCTGCTCAGCGTGCTGCTCAACTACGCGCTGTGTCTGC
TCACGCCGCCCGGCACGCCGGACGCGCCGCCCGCGCATATCGTCCCCGCG
CCCGCGCCCAAGGGCGCCGCCGCCGTCATCCGCAGCCAGCGCTGGCGCTT
CTGTGGCGTGTGCGAGCGGCACAAGCCGCCGCGCGCGCACCATTGCACGC
TGTGCAACGCGTGCTTCGCGCGGCTGTGTCACCACTGCCCCGCGCTGGGC
ACGTGCATTGCGCGCGACAACTACCCCTTCTTCTTCCGCTTCGTGCTGAG
CGCGGCGGCGGGCAGCGCGCTGGCATCCGCCACGGCCGCGCAGCTGTACG
CGCGTGCGCGGCGCGCCGACGCGCTGTTCGCGGCGGCGGTGGGCGGCGCC
GCGCTCGCCATCGCGCTCGGATCGCTGTGCGCGTGGAACGCCTTCCTGCT
CGCCACCGCGCAGACCACCGTCGAGTGGCTGGAGGGCGTGGCGCTGCGCC
GACGCGCCGACGCGCCGCCGGCGTGGGGCCGCTTCGCCGGCCCGTTTCAC
CGCGGGCTGCGCCGCAACGTCGACGACGCCTTCGGCACCGTTCCCAGCCG
CTTCGCGCCGTGGTGGCTGGTGCTGGTGCTGCCGCTGCCGCGCCTCCCGA
GCGCGTTTCCGCCCGGACTGGATGAGGTGTAA
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