Ggra6710.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6710.t1
Unique NameGgra6710.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:261212..261868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706192.1
PFAMsPeptidase_S24
Max annot lvl2759|Eukaryota
KEGG koko:K09647
KEGG Pathwayko03060,map03060
Evalue1.55e-34
EggNOG OGsCOG0681@1|root,KOG1568@2759|Eukaryota
Descriptionprotein processing involved in protein targeting to mitochondrion
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6710Ggra6710Gracilaria gracilis GNS1m malegenetig00000056_pilon 261212..261868 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6710.t1.stop1Ggra6710.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 261212..261214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6710.t1.CDS1Ggra6710.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 261212..261868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6710.t1.exon1Ggra6710.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 261212..261868 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6710.t1.start1Ggra6710.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 261866..261868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6710.t1Ggra6710.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 261212..261868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6710.t1 ID=Ggra6710.t1|Name=Ggra6710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MVRLLYRLLRAFNFVGSVNENQRRSAMRSSTLLKDLIVADLEKPLSYSLP
LTGNAMSPVFNASVDDMRTASDRLVIRRLSGSTQSFLNRVYVDDFVVVTD
PNDARRKYVRKIAAMEGAHMHSMHGDPPFSIPKSHCWVERENKQTDAPDS
SSFGPLSLQNVVGRVMYAIRSATDHGRVKNSPYAMASDSIVLAHENVAKH
FNAPPPSQPQSGTQDKSN*
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spliced messenger RNA

>Ggra6710.t1 ID=Ggra6710.t1|Name=Ggra6710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000056_pilon:261212..261868- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGCTTATTGTATCGTCTTCTGAGGGCGTTTAACTTTGTCGGCTC
TGTCAACGAGAATCAAAGACGTTCTGCGATGCGTTCTTCAACGCTGCTAA
AGGACCTCATAGTCGCAGACTTAGAGAAGCCTCTTTCGTATTCGTTGCCC
TTGACCGGCAATGCGATGAGCCCTGTCTTTAATGCAAGCGTCGACGACAT
GCGTACCGCAAGTGACCGTCTCGTTATCCGCCGACTTTCCGGCAGTACGC
AATCGTTTCTCAACCGAGTATACGTGGATGATTTCGTAGTCGTCACCGAC
CCCAATGATGCACGTCGAAAGTACGTGAGAAAGATAGCCGCCATGGAAGG
AGCGCACATGCATAGCATGCACGGTGACCCACCGTTTAGCATTCCAAAGA
GTCATTGCTGGGTAGAACGAGAAAACAAGCAAACCGACGCTCCAGATAGT
TCTTCATTTGGACCGTTGAGTCTTCAGAATGTTGTCGGACGAGTTATGTA
CGCAATCAGAAGCGCTACTGATCATGGTCGTGTAAAAAACTCTCCGTACG
CAATGGCCAGTGATTCTATTGTCCTTGCTCATGAAAACGTGGCTAAACAT
TTCAACGCTCCACCGCCTTCACAACCGCAATCAGGAACACAAGACAAGTC
AAACTAG
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protein sequence of Ggra6710.t1

>Ggra6710.t1 ID=Ggra6710.t1|Name=Ggra6710.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MVRLLYRLLRAFNFVGSVNENQRRSAMRSSTLLKDLIVADLEKPLSYSLP
LTGNAMSPVFNASVDDMRTASDRLVIRRLSGSTQSFLNRVYVDDFVVVTD
PNDARRKYVRKIAAMEGAHMHSMHGDPPFSIPKSHCWVERENKQTDAPDS
SSFGPLSLQNVVGRVMYAIRSATDHGRVKNSPYAMASDSIVLAHENVAKH
FNAPPPSQPQSGTQDKSN*
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mRNA from alignment at tig00000056_pilon:261212..261868-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6710.t1 ID=Ggra6710.t1|Name=Ggra6710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000056_pilon:261212..261868- (Gracilaria gracilis GNS1m male)
ATGGTTCGCTTATTGTATCGTCTTCTGAGGGCGTTTAACTTTGTCGGCTC
TGTCAACGAGAATCAAAGACGTTCTGCGATGCGTTCTTCAACGCTGCTAA
AGGACCTCATAGTCGCAGACTTAGAGAAGCCTCTTTCGTATTCGTTGCCC
TTGACCGGCAATGCGATGAGCCCTGTCTTTAATGCAAGCGTCGACGACAT
GCGTACCGCAAGTGACCGTCTCGTTATCCGCCGACTTTCCGGCAGTACGC
AATCGTTTCTCAACCGAGTATACGTGGATGATTTCGTAGTCGTCACCGAC
CCCAATGATGCACGTCGAAAGTACGTGAGAAAGATAGCCGCCATGGAAGG
AGCGCACATGCATAGCATGCACGGTGACCCACCGTTTAGCATTCCAAAGA
GTCATTGCTGGGTAGAACGAGAAAACAAGCAAACCGACGCTCCAGATAGT
TCTTCATTTGGACCGTTGAGTCTTCAGAATGTTGTCGGACGAGTTATGTA
CGCAATCAGAAGCGCTACTGATCATGGTCGTGTAAAAAACTCTCCGTACG
CAATGGCCAGTGATTCTATTGTCCTTGCTCATGAAAACGTGGCTAAACAT
TTCAACGCTCCACCGCCTTCACAACCGCAATCAGGAACACAAGACAAGTC
AAACTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:261212..261868-

>Ggra6710.t1 ID=Ggra6710.t1|Name=Ggra6710.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000056_pilon:261212..261868- (Gracilaria gracilis GNS1m male)
ATGGTTCGCTTATTGTATCGTCTTCTGAGGGCGTTTAACTTTGTCGGCTC
TGTCAACGAGAATCAAAGACGTTCTGCGATGCGTTCTTCAACGCTGCTAA
AGGACCTCATAGTCGCAGACTTAGAGAAGCCTCTTTCGTATTCGTTGCCC
TTGACCGGCAATGCGATGAGCCCTGTCTTTAATGCAAGCGTCGACGACAT
GCGTACCGCAAGTGACCGTCTCGTTATCCGCCGACTTTCCGGCAGTACGC
AATCGTTTCTCAACCGAGTATACGTGGATGATTTCGTAGTCGTCACCGAC
CCCAATGATGCACGTCGAAAGTACGTGAGAAAGATAGCCGCCATGGAAGG
AGCGCACATGCATAGCATGCACGGTGACCCACCGTTTAGCATTCCAAAGA
GTCATTGCTGGGTAGAACGAGAAAACAAGCAAACCGACGCTCCAGATAGT
TCTTCATTTGGACCGTTGAGTCTTCAGAATGTTGTCGGACGAGTTATGTA
CGCAATCAGAAGCGCTACTGATCATGGTCGTGTAAAAAACTCTCCGTACG
CAATGGCCAGTGATTCTATTGTCCTTGCTCATGAAAACGTGGCTAAACAT
TTCAACGCTCCACCGCCTTCACAACCGCAATCAGGAACACAAGACAAGTC
AAACTAG
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