Ggra6677.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6677.t1
Unique NameGgra6677.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length419
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:166815..168071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2K0L0
PFAMsRRM_1,Smg4_UPF3
Max annot lvl4751|Fungi
KEGG koko:K14328
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Evalue4.36e-12
EggNOG OGsKOG1295@1|root,KOG1295@2759|Eukaryota,38FPS@33154|Opisthokonta,3Q38E@4751|Fungi,1GU9Q@112252|Fungi incertae sedis
DescriptionSmg-4/UPF3 family
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6677Ggra6677Gracilaria gracilis GNS1m malegenetig00000056_pilon 166815..168071 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6677.t1.stop1Ggra6677.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 166815..166817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6677.t1.CDS1Ggra6677.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 166815..168071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6677.t1.exon1Ggra6677.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 166815..168071 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6677.t1.start1Ggra6677.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 168069..168071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6677.t1Ggra6677.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 166815..168071 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6677.t1 ID=Ggra6677.t1|Name=Ggra6677.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=419bp
MDRAPARRGRAAGDRSGASRPPPNGARPRRRPPRPPPPQQPASRSRARPK
NRARKRAPAPTIAVKLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPG
KLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVD
SSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADL
KGDAEREQTELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRAR
RRERDERKKAKATVRGGRSKPRGNAPQPAPTPPANKCNEHAEPTKAGARR
KKRRGGDNANSAKREEAVQDSKSSKSPAAERRNGQLRAVENSASTCSNSA
NSPPFVNSAASINGAQGGKGASSRGGPSGRSRYARGQKGRGRFGQNGNGT
VTVSARNEQQGCVALSMP*
back to top

spliced messenger RNA

>Ggra6677.t1 ID=Ggra6677.t1|Name=Ggra6677.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00000056_pilon:166815..168071- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGAGCTCCCGCGCGGCGAGGCCGCGCCGCCGGCGACCGGTCGGG
CGCGTCTCGTCCGCCGCCGAACGGCGCGCGTCCGCGTCGTCGTCCCCCTC
GTCCCCCTCCTCCGCAGCAGCCTGCGTCGCGCTCGCGCGCGCGCCCGAAG
AACAGGGCGAGAAAGAGAGCGCCTGCGCCCACCATAGCCGTCAAGCTCAT
CGTGCGACGATTGCCTCCCACGCTCACGGCCGAGGAGTTCAGCTCGCATG
CCGGCCCCAACGGCGCTGACAAGGCGCTTTGGACCGCGTACTATCCCGGC
AAGCTTGAGGCCGTTGGCGCCGTCAAGCGTTCCGCGCAGGTTGTCAGGCA
TTCCGTCGCGTACTTGGCGTTCGAGAAGCTTGATGATGCCAGCCATTTCT
TCCAGCAATTCGACGCCTTCAAATTCGCTGCCACCGCCAAGACCGTTGAT
AGCTCGCTGCAGAGCGGCACTGACTACTACGCACGTGTTGAGCGAGCCAT
GTACCAGTCCACCCCACCCCTCAACAGACGTCGTCCCCCTTCTCCGCTGG
AAGGTACCATCGAGAGCGATCCCGATTATCTCAACTTTCTAGCCGACCTC
AAGGGCGACGCCGAGCGAGAACAAACCGAACTTGCCGCCACCCTTGTGTC
CGCCTCTACTATTGTTGGTCGCGCCAGCGCAAACGAAAGCGACAACAATA
ATGGCAAGAAACAAGTCATCACTCCCCTCATGGAGGACGTTCGCGCACGT
CGGCGCGAGCGAGATGAGAGGAAGAAGGCGAAAGCGACTGTACGAGGAGG
GCGTAGCAAGCCTCGTGGCAATGCGCCTCAGCCTGCGCCAACACCGCCAG
CGAACAAGTGCAACGAGCACGCAGAGCCCACCAAGGCTGGCGCGCGCCGA
AAGAAGCGGCGTGGTGGCGACAACGCCAACTCCGCCAAGCGCGAAGAAGC
TGTACAGGACAGCAAGTCGTCAAAGTCACCTGCCGCTGAACGACGAAATG
GTCAACTGCGTGCCGTTGAAAACAGCGCGTCTACGTGCTCCAACTCAGCT
AACTCGCCGCCATTTGTGAACAGCGCCGCATCCATCAATGGTGCGCAGGG
CGGAAAGGGCGCTTCTAGTAGAGGTGGCCCTTCTGGTCGTTCACGCTATG
CGCGCGGACAAAAGGGCCGCGGGAGGTTTGGTCAGAATGGAAACGGCACG
GTGACTGTTTCTGCAAGGAACGAACAACAAGGTTGTGTAGCACTTTCGAT
GCCATAG
back to top

protein sequence of Ggra6677.t1

>Ggra6677.t1 ID=Ggra6677.t1|Name=Ggra6677.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=419bp
MDRAPARRGRAAGDRSGASRPPPNGARPRRRPPRPPPPQQPASRSRARPK
NRARKRAPAPTIAVKLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPG
KLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVD
SSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADL
KGDAEREQTELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRAR
RRERDERKKAKATVRGGRSKPRGNAPQPAPTPPANKCNEHAEPTKAGARR
KKRRGGDNANSAKREEAVQDSKSSKSPAAERRNGQLRAVENSASTCSNSA
NSPPFVNSAASINGAQGGKGASSRGGPSGRSRYARGQKGRGRFGQNGNGT
VTVSARNEQQGCVALSMP*
back to top

mRNA from alignment at tig00000056_pilon:166815..168071-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6677.t1 ID=Ggra6677.t1|Name=Ggra6677.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00000056_pilon:166815..168071- (Gracilaria gracilis GNS1m male)
ATGGATAGAGCTCCCGCGCGGCGAGGCCGCGCCGCCGGCGACCGGTCGGG
CGCGTCTCGTCCGCCGCCGAACGGCGCGCGTCCGCGTCGTCGTCCCCCTC
GTCCCCCTCCTCCGCAGCAGCCTGCGTCGCGCTCGCGCGCGCGCCCGAAG
AACAGGGCGAGAAAGAGAGCGCCTGCGCCCACCATAGCCGTCAAGCTCAT
CGTGCGACGATTGCCTCCCACGCTCACGGCCGAGGAGTTCAGCTCGCATG
CCGGCCCCAACGGCGCTGACAAGGCGCTTTGGACCGCGTACTATCCCGGC
AAGCTTGAGGCCGTTGGCGCCGTCAAGCGTTCCGCGCAGGTTGTCAGGCA
TTCCGTCGCGTACTTGGCGTTCGAGAAGCTTGATGATGCCAGCCATTTCT
TCCAGCAATTCGACGCCTTCAAATTCGCTGCCACCGCCAAGACCGTTGAT
AGCTCGCTGCAGAGCGGCACTGACTACTACGCACGTGTTGAGCGAGCCAT
GTACCAGTCCACCCCACCCCTCAACAGACGTCGTCCCCCTTCTCCGCTGG
AAGGTACCATCGAGAGCGATCCCGATTATCTCAACTTTCTAGCCGACCTC
AAGGGCGACGCCGAGCGAGAACAAACCGAACTTGCCGCCACCCTTGTGTC
CGCCTCTACTATTGTTGGTCGCGCCAGCGCAAACGAAAGCGACAACAATA
ATGGCAAGAAACAAGTCATCACTCCCCTCATGGAGGACGTTCGCGCACGT
CGGCGCGAGCGAGATGAGAGGAAGAAGGCGAAAGCGACTGTACGAGGAGG
GCGTAGCAAGCCTCGTGGCAATGCGCCTCAGCCTGCGCCAACACCGCCAG
CGAACAAGTGCAACGAGCACGCAGAGCCCACCAAGGCTGGCGCGCGCCGA
AAGAAGCGGCGTGGTGGCGACAACGCCAACTCCGCCAAGCGCGAAGAAGC
TGTACAGGACAGCAAGTCGTCAAAGTCACCTGCCGCTGAACGACGAAATG
GTCAACTGCGTGCCGTTGAAAACAGCGCGTCTACGTGCTCCAACTCAGCT
AACTCGCCGCCATTTGTGAACAGCGCCGCATCCATCAATGGTGCGCAGGG
CGGAAAGGGCGCTTCTAGTAGAGGTGGCCCTTCTGGTCGTTCACGCTATG
CGCGCGGACAAAAGGGCCGCGGGAGGTTTGGTCAGAATGGAAACGGCACG
GTGACTGTTTCTGCAAGGAACGAACAACAAGGTTGTGTAGCACTTTCGAT
GCCATAG
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:166815..168071-

>Ggra6677.t1 ID=Ggra6677.t1|Name=Ggra6677.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1257bp|location=Sequence derived from alignment at tig00000056_pilon:166815..168071- (Gracilaria gracilis GNS1m male)
ATGGATAGAGCTCCCGCGCGGCGAGGCCGCGCCGCCGGCGACCGGTCGGG
CGCGTCTCGTCCGCCGCCGAACGGCGCGCGTCCGCGTCGTCGTCCCCCTC
GTCCCCCTCCTCCGCAGCAGCCTGCGTCGCGCTCGCGCGCGCGCCCGAAG
AACAGGGCGAGAAAGAGAGCGCCTGCGCCCACCATAGCCGTCAAGCTCAT
CGTGCGACGATTGCCTCCCACGCTCACGGCCGAGGAGTTCAGCTCGCATG
CCGGCCCCAACGGCGCTGACAAGGCGCTTTGGACCGCGTACTATCCCGGC
AAGCTTGAGGCCGTTGGCGCCGTCAAGCGTTCCGCGCAGGTTGTCAGGCA
TTCCGTCGCGTACTTGGCGTTCGAGAAGCTTGATGATGCCAGCCATTTCT
TCCAGCAATTCGACGCCTTCAAATTCGCTGCCACCGCCAAGACCGTTGAT
AGCTCGCTGCAGAGCGGCACTGACTACTACGCACGTGTTGAGCGAGCCAT
GTACCAGTCCACCCCACCCCTCAACAGACGTCGTCCCCCTTCTCCGCTGG
AAGGTACCATCGAGAGCGATCCCGATTATCTCAACTTTCTAGCCGACCTC
AAGGGCGACGCCGAGCGAGAACAAACCGAACTTGCCGCCACCCTTGTGTC
CGCCTCTACTATTGTTGGTCGCGCCAGCGCAAACGAAAGCGACAACAATA
ATGGCAAGAAACAAGTCATCACTCCCCTCATGGAGGACGTTCGCGCACGT
CGGCGCGAGCGAGATGAGAGGAAGAAGGCGAAAGCGACTGTACGAGGAGG
GCGTAGCAAGCCTCGTGGCAATGCGCCTCAGCCTGCGCCAACACCGCCAG
CGAACAAGTGCAACGAGCACGCAGAGCCCACCAAGGCTGGCGCGCGCCGA
AAGAAGCGGCGTGGTGGCGACAACGCCAACTCCGCCAAGCGCGAAGAAGC
TGTACAGGACAGCAAGTCGTCAAAGTCACCTGCCGCTGAACGACGAAATG
GTCAACTGCGTGCCGTTGAAAACAGCGCGTCTACGTGCTCCAACTCAGCT
AACTCGCCGCCATTTGTGAACAGCGCCGCATCCATCAATGGTGCGCAGGG
CGGAAAGGGCGCTTCTAGTAGAGGTGGCCCTTCTGGTCGTTCACGCTATG
CGCGCGGACAAAAGGGCCGCGGGAGGTTTGGTCAGAATGGAAACGGCACG
GTGACTGTTTCTGCAAGGAACGAACAACAAGGTTGTGTAGCACTTTCGAT
GCCATAG
back to top