Ggra6677.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6677.t1
Unique NameGgra6677.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length419
Homology
BLAST of Ggra6677.t1 vs. uniprot
Match: A0A2V3IYE9 (Regulator of nonsense transcripts UPF3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYE9_9FLOR)

HSP 1 Score: 415 bits (1066), Expect = 7.790e-140
Identity = 242/407 (59.46%), Postives = 291/407 (71.50%), Query Frame = 0
Query:    1 MDRAPARRGRAAGDRSGASRPPPNGARPRRXXXXXXXXXQPASRSRARPKNRARKRAPAPTIAVKLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPGKLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADLKGDAEREQTELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRARRRERDERKKAKATVRGGRSKPRGN-APQPAPTPPANKCNEHAEPTKAGARRKXXXXGDNANSAKREEAVQDSKSSKSPAAERRNGQLRAVENSA--STCSNSANSPP---FVNSAASINGAQGGKGASSRGGPSGRSRYARGQKGRGRFGQNGNGTV 401
            MDRA ARRGRA G             RPRR         Q + RS  R KN        P++A+K++VRRLPPTLTAE+F +HA P GADKALW AYYPGK+EAVGAVKRSAQVVRHSVAYLAFEKL+DA+HFF +FD FKF    KT+DSSLQSGTDY+ARVERAM+Q+TP L RRR P  +EGTIESDPDYLNFLA++KGDAEREQ+ELAA   + S++V R +  E ++   K  V+TPL+EDVRARR+ERDERKKAK+TVRG R K RG+ AP PA      K  E  E  K GA+RK    GDN N++KR++AVQ+ K SKS A ERRNGQ+R    +A  ST +N+  +PP   F N+ A++NG  G KG S+R    GRSRY+RGQKGRGR+ QNGNGT+
Sbjct:    1 MDRASARRGRAPG------------GRPRRRPPRPSHPQQASPRSHPRSKNXXXXXXXXPSVAIKIVVRRLPPTLTAEQFRTHANPKGADKALWNAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDATHFFNEFDGFKFVDPGKTIDSSLQSGTDYFARVERAMFQTTPLLTRRRAPPAIEGTIESDPDYLNFLAEMKGDAEREQSELAANQTAGSSVVSRHTTTEKEDRASKGLVLTPLIEDVRARRKERDERKKAKSTVRGSRGKGRGSTAPPPAAISAVPKVVESVENVKLGAKRKKRRAGDNKNASKRDDAVQERKGSKSGANERRNGQIRQTGPNAGNSTSANANKAPPSSPFANNNAAMNGGSGSKGGSTRXXXXGRSRYSRGQKGRGRYAQNGNGTI 395          
BLAST of Ggra6677.t1 vs. uniprot
Match: R7QSJ8 (Smg4_UPF3 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSJ8_CHOCR)

HSP 1 Score: 168 bits (425), Expect = 1.390e-43
Identity = 124/303 (40.92%), Postives = 166/303 (54.79%), Query Frame = 0
Query:   59 APTIAVKLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPGKLEAV-GAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADLKGDAEREQTEL-AATLVSASTIVGRA-SANESDN------------NNGK--------KQVITPLMEDVRARRRERDERKKA-KATVRGGRSKPRGNAPQPAPTPPANKCNEHAEPTKAGARRKXXXXG---DNANSAKREEAVQDSKSSKSPAAERRNG 334
            APT+AVKL+VRRLPPTLTA++F+  A P GA +A+W ++ PG   A  G VKR   V RH+ AYLAF  +DDA  F Q F+  KF        S      D+ ARVERA +Q  PPL +   P PL GTIE DPDY+ F+A L+ + ++E +   A T+   S I  R   +N SD             + GK         ++ TPLMEDVRARR+ERD RKK  K T R  R K R   P P+ +P   +     + T +  ++K        + AN+AKR+E +Q +K   SPA + + G
Sbjct:   93 APTVAVKLVVRRLPPTLTADKFAEIADPAGASRAVWRSFAPGSASAASGPVKRLRLVTRHATAYLAFVNMDDAVAFTQTFNGIKFQDPNAPPSSQ---NHDFIARVERAPWQPVPPLTKITKPLPLHGTIERDPDYMAFVARLEDETKKELSGANALTVAQTSAIFSRGPGSNPSDTQKRDNTSASVSTSTGKAGALAVNGSELSTPLMEDVRARRKERDNRKKTTKVTPRAARGKARH--PHPSDSPHKQQTESPGKVTSSMRKKKQRERARASEIANAAKRQEDMQSAKRIGSPAIDSKRG 390          
BLAST of Ggra6677.t1 vs. uniprot
Match: regulator of nonsense transcripts UPF3 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C37A9 (regulator of nonsense transcripts UPF3 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C37A9)

HSP 1 Score: 76.3 bits (186), Expect = 2.280e-11
Identity = 66/208 (31.73%), Postives = 91/208 (43.75%), Query Frame = 0
Query:   60 PTIAVKLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPGKLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADLKGDAEREQTELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRARRRERDERKKAKATVRGG 267
            P    K++VRRLPPTL+ +   S      A   LW  + PGK      +        HS AY+ FE+ +D   F + F    F           + G+ Y A VE A YQ  P L  ++     EG+I  DPDYL F+  L   AE         L SA   + R  ++          ++TPLME VR +R  +  ++ AKA  R G
Sbjct:   43 PLSRTKVVVRRLPPTLSEDALVSRIQTRFARPYLWMLFRPGKSTHRNQI--------HSRAYIEFERPEDVLAFHEDFHGHVFVN---------EKGSQYKAMVEYAPYQRVPDLRVKK--DGREGSILRDPDYLEFVDTLGKAAE--------LLPSADVQLERPGSSREG------VIVTPLMEYVRQKRAAKSAQRAAKAGFRSG 217          
BLAST of Ggra6677.t1 vs. uniprot
Match: L7M147 (Putative regulator of nonsense transcripts 3a n=6 Tax=Rhipicephalinae TaxID=426437 RepID=L7M147_RHIPC)

HSP 1 Score: 73.6 bits (179), Expect = 1.860e-10
Identity = 64/194 (32.99%), Postives = 92/194 (47.42%), Query Frame = 0
Query:   65 KLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPGKLEAVGAVKRSAQVVRH--SVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADLKGDAEREQTELAATLVSASTIVGRASANESD--NNNGKKQVITPLMEDVRARRRER 254
            K++VRRLPPT+T ++F     P      ++             VK    +  H  S AY+ F   D+   F ++FD + F      VD   + G +Y A VE A +Q  P   R R   P  GTIE DP+Y+NFL  L+   E        TL S  T +    A E +   NNG  +V+TPL+E ++ R+ E+
Sbjct:   34 KVVVRRLPPTMTEDQFLEQISPVPESDYMYF------------VKGDLSLGPHAFSRAYINFVNQDEIFIFKEKFDDYIF------VD---EKGNEYPALVEYAPFQKIP-KRRNRKKDPKCGTIEQDPEYINFLESLEQPEE-------VTLPSIDTYIEEIEAREKEIKANNGCLKVVTPLIEYLQQRKLEK 198          
BLAST of Ggra6677.t1 vs. uniprot
Match: regulator of nonsense transcripts 3A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF4ED (regulator of nonsense transcripts 3A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF4ED)

HSP 1 Score: 73.6 bits (179), Expect = 2.180e-10
Identity = 62/190 (32.63%), Postives = 87/190 (45.79%), Query Frame = 0
Query:   65 KLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPGKLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADLKGDAEREQTELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRARRRER 254
            K++VRRLPP+LT E F     P       +  +Y  K +       S      S AY+ F+  +D ++F  +FD + F      VD+    G +Y A VE A +Q  P    R+P S  +GTIE DPDY+ FL  L      E   L   L         A   E+    G  +V TPL+E ++ RR E+
Sbjct:   24 KVVVRRLPPSLTGETFLEQVSP----LPNYDFFYFMKADL------SLGASAFSRAYINFQNYEDIANFRDKFDGYIF------VDAK---GNEYPAIVEFATFQKVPKKKMRKPDSK-KGTIEQDPDYVKFLDSLTNPETEEVVSLDTYLEQL-----EAKEREAKATKGGPKVTTPLIEFIKKRREEK 188          
BLAST of Ggra6677.t1 vs. uniprot
Match: regulator of nonsense transcripts 3B isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED887A9 (regulator of nonsense transcripts 3B isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED887A9)

HSP 1 Score: 72.8 bits (177), Expect = 4.570e-10
Identity = 68/223 (30.49%), Postives = 105/223 (47.09%), Query Frame = 0
Query:   48 RPKNRARKRAPAPTIAVKLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPGKLEAVGAVKRSAQVVRHS--VAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADLKGDAE-------REQTELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRARRRERDERKKAK 261
            +PK + +K   AP    K+++RRLPPT+T E+F     P   +  L+ A            K  A + +HS   AY+ F +  D   F ++FD + F      +D+    G ++ A VE A +Q  P   + R   P  GTI+SDPDYL+F+A +K   E       +     ++ L+S   ++    A E D    K    TPL+E ++ R+ ER   K  K
Sbjct:   30 KPKEKDKKYRSAPP--TKVVIRRLPPTMTLEKFIDQVSPLPENDYLYFA------------KADASLGQHSFCTAYVNFVQPKDVFIFKEKFDDYIF------IDNK---GNEFPAVVEFAPFQKIP-RKKSRQRDPKCGTIDSDPDYLSFVAQVKQTVEEAPDAGIKSTCGKSSPLLSVQDVLEEIEAKERDRKCRK--ATTPLIEYIKQRKMERQRMKDEK 226          
BLAST of Ggra6677.t1 vs. uniprot
Match: A0A7S0ZAI8 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAI8_9RHOD)

HSP 1 Score: 68.9 bits (167), Expect = 1.060e-9
Identity = 69/224 (30.80%), Postives = 104/224 (46.43%), Query Frame = 0
Query:   64 VKLIVRRLPPTLTAEEFSSHAGPNGAD------KALWTAYYPGKLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTP-PLNRRRPPSPLEGTIESDPDYLNFLADLKGDAEREQTELAATLVSASTIVGRASANESDNNNGKKQVI----------TPLMEDVRARRRERDERKKAKATVRGGRSK 270
            VKL+VRRLP  LT ++F   +   G D        +W+ +          V +S +  R+SV YLA+  +D A  F         A    T+    + G  + ARVERA Y   P     ++  + L GTIE DPDY  FL   K +    +T + + L+  + +V    A   +++  KK+ +          TPLM ++R +RRER+   K+ AT    RSK
Sbjct:    1 VKLVVRRLPAGLTFDQFCEVSNNAGFDLNAPENTPIWSRF----------VYKSKKT-RYSVCYLAWSSMDRAFRFSD-------ALNGHTITDP-KHGQSFVARVERAPYTKIPNDKATKQSVAALAGTIEEDPDYKEFLK--KYNESLNETTIHSMLLPQAALVSDVGAMSINDSFSKKKSVPLDVNGSPKVTPLMLELREKRRERES--KSGATAEDKRSK 201          
BLAST of Ggra6677.t1 vs. uniprot
Match: A0A1Y2BFG8 (Nonsense-mediated decay UPF3 n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BFG8_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 6.490e-9
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 0
Query:   65 KLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPGKLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLE-GTIESDPDYLNFLADLKGD 203
            K++VRRLPP L ++ F        A    W+ Y+ GK+    +   +A+    S AYL+F  LD  + F Q ++ + F           +SGT+Y A VE A +Q  P   RR+P       T+E+DP+YL F+  LK D
Sbjct:   39 KVVVRRLPPNLPSDVFDQTVA-QWAHLVTWSKYFAGKI----SKNTTAKPHTLSRAYLSFTSLDHLAEFAQAYNGWLFKEE--------KSGTEYRASVEMAPFQKVP---RRKPRVDYRVNTLETDPEYLEFIESLKQD 162          
BLAST of Ggra6677.t1 vs. uniprot
Match: A0A367JB06 (Smg4_UPF3 domain-containing protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367JB06_RHIST)

HSP 1 Score: 67.4 bits (163), Expect = 7.710e-9
Identity = 67/211 (31.75%), Postives = 96/211 (45.50%), Query Frame = 0
Query:   54 RKRAPAPTIAVKLIVRRLPPTLTAEEFSSHAGP-NGADKALWTAYYPGKLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADLKG----DAEREQT--------ELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRARR 251
            R+R P P    K++VRRLPP L  +EF     P    +   +++Y  GK+      K   +    S AY   + ++    F + FD   F       DS    G D  A VE A YQ TP    ++     +GTI+ DPDYLNFL  L+     DAE ++         E     ++ +T   +A ANE  N    K   TPL+E +RA++
Sbjct:    1 RQRKPVPK--TKVVVRRLPPQLAKDEFMEAVKPWINEETTDYSSYISGKI-----AKSKGKENVFSRAYFHLKTMEAVIAFHRGFDGHTFT------DSR---GNDSRAVVEFAPYQKTP--REQKTADARQGTIDEDPDYLNFLKFLEAENNKDAETQEDANNGLNPIEKLENRIAMNTDTAKALANEQAN----KPKTTPLLEHLRAQK 189          
BLAST of Ggra6677.t1 vs. uniprot
Match: regulator of nonsense transcripts 3B-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C711DE8 (regulator of nonsense transcripts 3B-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C711DE8)

HSP 1 Score: 67.8 bits (164), Expect = 1.520e-8
Identity = 60/200 (30.00%), Postives = 87/200 (43.50%), Query Frame = 0
Query:   55 KRAPAPTIAVKLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPGKLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVDSSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADLKGDAEREQTELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRARRRER 254
            KR    T   K++VRRLPP +T EEF     P         ++    L A            ++ AY+ F+ +DD   F  +FD + F      VD   Q G +Y A VE A +Q  P  +  +      GTI+ DPD+L F+  L          L A L        +A   E  +NNG  +V TPL+E +  ++ E+
Sbjct:   35 KREKTTTPLTKVVVRRLPPAMTEEEFLEVVAPLPDHDYFNFSFTDSSLGAHA----------YNRAYINFKNVDDVYTFRDRFDGYVF------VD---QKGDEYPAMVEFAPFQKIPKRSSGKKKDARCGTIDEDPDFLAFMESLTNPTPVTLPNLEAVLEEI-----QAYDRELKSNNGVMKVKTPLLEFIEQKKAEK 210          
The following BLAST results are available for this feature:
BLAST of Ggra6677.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYE97.790e-14059.46Regulator of nonsense transcripts UPF3 n=1 Tax=Gra... [more]
R7QSJ81.390e-4340.92Smg4_UPF3 domain-containing protein n=1 Tax=Chondr... [more]
regulator of nonsense transcripts UPF3 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C37A92.280e-1131.73regulator of nonsense transcripts UPF3 n=2 Tax=Sel... [more]
L7M1471.860e-1032.99Putative regulator of nonsense transcripts 3a n=6 ... [more]
regulator of nonsense transcripts 3A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF4ED2.180e-1032.63regulator of nonsense transcripts 3A-like n=1 Tax=... [more]
regulator of nonsense transcripts 3B isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED887A94.570e-1030.49regulator of nonsense transcripts 3B isoform X1 n=... [more]
A0A7S0ZAI81.060e-930.80Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A1Y2BFG86.490e-934.29Nonsense-mediated decay UPF3 n=1 Tax=Rhizoclosmati... [more]
A0A367JB067.710e-931.75Smg4_UPF3 domain-containing protein (Fragment) n=1... [more]
regulator of nonsense transcripts 3B-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C711DE81.520e-830.00regulator of nonsense transcripts 3B-like n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 60..170
e-value: 9.3E-18
score: 66.4
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 64..251
e-value: 7.6E-29
score: 100.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..418
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..368
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..418
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..262
NoneNo IPR availablePANTHERPTHR13112:SF0FI21285P1coord: 63..366
NoneNo IPR availableCDDcd12455RRM_like_Smg4_UPF3coord: 65..166
e-value: 3.09557E-18
score: 77.2928
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 63..366
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 65..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:166815..168071 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6677.t1Ggra6677.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 166815..168071 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6677.t1 ID=Ggra6677.t1|Name=Ggra6677.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=419bp
MDRAPARRGRAAGDRSGASRPPPNGARPRRRPPRPPPPQQPASRSRARPK
NRARKRAPAPTIAVKLIVRRLPPTLTAEEFSSHAGPNGADKALWTAYYPG
KLEAVGAVKRSAQVVRHSVAYLAFEKLDDASHFFQQFDAFKFAATAKTVD
SSLQSGTDYYARVERAMYQSTPPLNRRRPPSPLEGTIESDPDYLNFLADL
KGDAEREQTELAATLVSASTIVGRASANESDNNNGKKQVITPLMEDVRAR
RRERDERKKAKATVRGGRSKPRGNAPQPAPTPPANKCNEHAEPTKAGARR
KKRRGGDNANSAKREEAVQDSKSSKSPAAERRNGQLRAVENSASTCSNSA
NSPPFVNSAASINGAQGGKGASSRGGPSGRSRYARGQKGRGRFGQNGNGT
VTVSARNEQQGCVALSMP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR005120UPF3_dom
IPR039722Upf3
IPR035979RBD_domain_sf