Ggra6543.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6543.t1
Unique NameGgra6543.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:224548..225153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707899.1
Preferred nameFCF1
PFAMsFcf1
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K14566,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03008,map00780,map01100,map03008
KEGG ModuleM00123
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
Evalue5.81e-81
EggNOG OGsCOG1412@1|root,KOG3165@2759|Eukaryota
EC2.6.1.62,6.3.3.3
DescriptionRRNA-processing protein FCF1
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6543Ggra6543Gracilaria gracilis GNS1m malegenetig00000081_pilon 224548..225153 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6543.t1.stop1Ggra6543.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 224548..224550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6543.t1.CDS1Ggra6543.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 224548..225153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6543.t1.exon1Ggra6543.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 224548..225153 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6543.t1.start1Ggra6543.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 225151..225153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6543.t1Ggra6543.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 224548..225153 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6543.t1 ID=Ggra6543.t1|Name=Ggra6543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=202bp
MGGARKKRQRKYAEVKRLVSPNDSRLKIKELSKQEAAPVVAKKPDKDILA
NNAAPSSMFFRFNPSLGPPFRILLDTNFINFSVANKIDVTRGMLNCLAAP
STICISDCVIAELQKLPKKYSVALRVARDRRFKRLICSHKGTYADDCIMQ
RIAAHRIYIVATCDKDLKRRIRKVAGIPIMYISGHQYKVERLPETLAPTL
K*
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spliced messenger RNA

>Ggra6543.t1 ID=Ggra6543.t1|Name=Ggra6543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000081_pilon:224548..225153- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGTGCGAGAAAGAAACGACAGCGAAAGTACGCTGAAGTGAAGCG
CCTCGTTTCACCAAACGACTCTCGTCTGAAGATCAAGGAGCTATCAAAAC
AAGAAGCAGCTCCAGTTGTTGCAAAGAAACCAGACAAAGACATCCTAGCG
AACAATGCTGCTCCTTCTTCTATGTTTTTCCGCTTTAACCCCTCGCTTGG
ACCTCCATTTAGAATTCTCTTGGATACAAACTTTATTAACTTCTCCGTGG
CCAACAAGATTGACGTAACTCGTGGAATGCTCAATTGTCTTGCAGCGCCT
TCTACCATCTGCATATCAGATTGCGTCATTGCCGAGCTACAAAAACTCCC
AAAGAAGTATTCTGTTGCATTACGGGTAGCACGAGACCGGCGCTTCAAAC
GACTAATTTGTTCCCATAAGGGAACCTACGCCGACGACTGCATCATGCAG
CGTATTGCTGCACATCGTATCTACATTGTGGCTACCTGCGATAAGGATTT
GAAGAGGCGCATTAGGAAAGTTGCGGGAATACCGATCATGTACATCTCAG
GACATCAATACAAGGTTGAACGCCTCCCCGAAACGTTGGCTCCAACACTC
AAGTAG
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protein sequence of Ggra6543.t1

>Ggra6543.t1 ID=Ggra6543.t1|Name=Ggra6543.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MGGARKKRQRKYAEVKRLVSPNDSRLKIKELSKQEAAPVVAKKPDKDILA
NNAAPSSMFFRFNPSLGPPFRILLDTNFINFSVANKIDVTRGMLNCLAAP
STICISDCVIAELQKLPKKYSVALRVARDRRFKRLICSHKGTYADDCIMQ
RIAAHRIYIVATCDKDLKRRIRKVAGIPIMYISGHQYKVERLPETLAPTL
K*
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mRNA from alignment at tig00000081_pilon:224548..225153-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6543.t1 ID=Ggra6543.t1|Name=Ggra6543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000081_pilon:224548..225153- (Gracilaria gracilis GNS1m male)
ATGGGAGGTGCGAGAAAGAAACGACAGCGAAAGTACGCTGAAGTGAAGCG
CCTCGTTTCACCAAACGACTCTCGTCTGAAGATCAAGGAGCTATCAAAAC
AAGAAGCAGCTCCAGTTGTTGCAAAGAAACCAGACAAAGACATCCTAGCG
AACAATGCTGCTCCTTCTTCTATGTTTTTCCGCTTTAACCCCTCGCTTGG
ACCTCCATTTAGAATTCTCTTGGATACAAACTTTATTAACTTCTCCGTGG
CCAACAAGATTGACGTAACTCGTGGAATGCTCAATTGTCTTGCAGCGCCT
TCTACCATCTGCATATCAGATTGCGTCATTGCCGAGCTACAAAAACTCCC
AAAGAAGTATTCTGTTGCATTACGGGTAGCACGAGACCGGCGCTTCAAAC
GACTAATTTGTTCCCATAAGGGAACCTACGCCGACGACTGCATCATGCAG
CGTATTGCTGCACATCGTATCTACATTGTGGCTACCTGCGATAAGGATTT
GAAGAGGCGCATTAGGAAAGTTGCGGGAATACCGATCATGTACATCTCAG
GACATCAATACAAGGTTGAACGCCTCCCCGAAACGTTGGCTCCAACACTC
AAGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:224548..225153-

>Ggra6543.t1 ID=Ggra6543.t1|Name=Ggra6543.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000081_pilon:224548..225153- (Gracilaria gracilis GNS1m male)
ATGGGAGGTGCGAGAAAGAAACGACAGCGAAAGTACGCTGAAGTGAAGCG
CCTCGTTTCACCAAACGACTCTCGTCTGAAGATCAAGGAGCTATCAAAAC
AAGAAGCAGCTCCAGTTGTTGCAAAGAAACCAGACAAAGACATCCTAGCG
AACAATGCTGCTCCTTCTTCTATGTTTTTCCGCTTTAACCCCTCGCTTGG
ACCTCCATTTAGAATTCTCTTGGATACAAACTTTATTAACTTCTCCGTGG
CCAACAAGATTGACGTAACTCGTGGAATGCTCAATTGTCTTGCAGCGCCT
TCTACCATCTGCATATCAGATTGCGTCATTGCCGAGCTACAAAAACTCCC
AAAGAAGTATTCTGTTGCATTACGGGTAGCACGAGACCGGCGCTTCAAAC
GACTAATTTGTTCCCATAAGGGAACCTACGCCGACGACTGCATCATGCAG
CGTATTGCTGCACATCGTATCTACATTGTGGCTACCTGCGATAAGGATTT
GAAGAGGCGCATTAGGAAAGTTGCGGGAATACCGATCATGTACATCTCAG
GACATCAATACAAGGTTGAACGCCTCCCCGAAACGTTGGCTCCAACACTC
AAGTAG
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