Ggra6434.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6434.t1
Unique NameGgra6434.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:219576..220265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog749414.SBI_07764
PFAMsDUF1963
Max annot lvl201174|Actinobacteria
Evalue6.82e-35
EggNOG OGsCOG3878@1|root,COG3878@2|Bacteria,2GNAB@201174|Actinobacteria
DescriptionProtein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6434Ggra6434Gracilaria gracilis GNS1m malegenetig00000918_pilon 219576..220265 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6434.t1.stop1Ggra6434.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 219576..219578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6434.t1.CDS1Ggra6434.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 219576..220265 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6434.t1.exon1Ggra6434.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 219576..220265 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6434.t1.start1Ggra6434.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 220263..220265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6434.t1Ggra6434.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 219576..220265 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6434.t1 ID=Ggra6434.t1|Name=Ggra6434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MVPVIQLRKDDVPELGFPEAKNLFQLLWCPDQYHEDTNYGPYPRCVWRHV
QHEDGTELLQPDQVPRPTPLTDRFAIPRPCAVHPERMEEYPAYQELEQIS
DTLAEQIDSWVAENAEQDLVALGELGLEGDDKIYEECWGACPNTKVGGWV
YWTHDVSLCTCTECGSKMEHLLSISSLEYGGGLVSRWYPIDEPREQARQG
TEMWLGDSERFVLFVCRACSHFPIRGKLG*
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spliced messenger RNA

>Ggra6434.t1 ID=Ggra6434.t1|Name=Ggra6434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000918_pilon:219576..220265- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCGGTGATACAGCTGAGGAAGGACGACGTACCAGAACTTGGGTT
TCCGGAAGCAAAGAACCTGTTTCAGCTTTTGTGGTGTCCGGACCAGTACC
ACGAGGACACGAACTATGGGCCGTATCCCCGTTGCGTTTGGCGACATGTT
CAACATGAGGACGGCACAGAGCTTTTGCAACCCGACCAAGTGCCTCGACC
TACTCCACTCACAGATAGGTTTGCGATCCCAAGACCGTGTGCAGTGCACC
CCGAACGCATGGAGGAGTATCCTGCTTATCAGGAGCTGGAGCAGATATCG
GATACTCTTGCGGAACAGATAGACAGCTGGGTTGCTGAGAATGCGGAGCA
GGACTTGGTGGCACTCGGGGAGCTTGGTTTGGAAGGCGATGATAAGATTT
ATGAAGAATGCTGGGGTGCTTGCCCAAACACCAAGGTAGGAGGATGGGTG
TACTGGACGCACGACGTTAGTTTGTGTACATGTACTGAATGTGGGAGCAA
AATGGAACACCTCCTTTCTATATCGTCTTTGGAATATGGCGGTGGGCTGG
TGTCGAGATGGTACCCGATAGACGAACCGCGAGAGCAAGCGCGTCAGGGA
ACAGAAATGTGGCTGGGTGACTCTGAAAGGTTTGTGCTGTTTGTTTGCAG
AGCATGCTCTCACTTTCCCATCAGGGGAAAGCTGGGGTAG
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protein sequence of Ggra6434.t1

>Ggra6434.t1 ID=Ggra6434.t1|Name=Ggra6434.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MVPVIQLRKDDVPELGFPEAKNLFQLLWCPDQYHEDTNYGPYPRCVWRHV
QHEDGTELLQPDQVPRPTPLTDRFAIPRPCAVHPERMEEYPAYQELEQIS
DTLAEQIDSWVAENAEQDLVALGELGLEGDDKIYEECWGACPNTKVGGWV
YWTHDVSLCTCTECGSKMEHLLSISSLEYGGGLVSRWYPIDEPREQARQG
TEMWLGDSERFVLFVCRACSHFPIRGKLG*
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mRNA from alignment at tig00000918_pilon:219576..220265-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6434.t1 ID=Ggra6434.t1|Name=Ggra6434.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000918_pilon:219576..220265- (Gracilaria gracilis GNS1m male)
ATGGTGCCGGTGATACAGCTGAGGAAGGACGACGTACCAGAACTTGGGTT
TCCGGAAGCAAAGAACCTGTTTCAGCTTTTGTGGTGTCCGGACCAGTACC
ACGAGGACACGAACTATGGGCCGTATCCCCGTTGCGTTTGGCGACATGTT
CAACATGAGGACGGCACAGAGCTTTTGCAACCCGACCAAGTGCCTCGACC
TACTCCACTCACAGATAGGTTTGCGATCCCAAGACCGTGTGCAGTGCACC
CCGAACGCATGGAGGAGTATCCTGCTTATCAGGAGCTGGAGCAGATATCG
GATACTCTTGCGGAACAGATAGACAGCTGGGTTGCTGAGAATGCGGAGCA
GGACTTGGTGGCACTCGGGGAGCTTGGTTTGGAAGGCGATGATAAGATTT
ATGAAGAATGCTGGGGTGCTTGCCCAAACACCAAGGTAGGAGGATGGGTG
TACTGGACGCACGACGTTAGTTTGTGTACATGTACTGAATGTGGGAGCAA
AATGGAACACCTCCTTTCTATATCGTCTTTGGAATATGGCGGTGGGCTGG
TGTCGAGATGGTACCCGATAGACGAACCGCGAGAGCAAGCGCGTCAGGGA
ACAGAAATGTGGCTGGGTGACTCTGAAAGGTTTGTGCTGTTTGTTTGCAG
AGCATGCTCTCACTTTCCCATCAGGGGAAAGCTGGGGTAG
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Coding sequence (CDS) from alignment at tig00000918_pilon:219576..220265-

>Ggra6434.t1 ID=Ggra6434.t1|Name=Ggra6434.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000918_pilon:219576..220265- (Gracilaria gracilis GNS1m male)
ATGGTGCCGGTGATACAGCTGAGGAAGGACGACGTACCAGAACTTGGGTT
TCCGGAAGCAAAGAACCTGTTTCAGCTTTTGTGGTGTCCGGACCAGTACC
ACGAGGACACGAACTATGGGCCGTATCCCCGTTGCGTTTGGCGACATGTT
CAACATGAGGACGGCACAGAGCTTTTGCAACCCGACCAAGTGCCTCGACC
TACTCCACTCACAGATAGGTTTGCGATCCCAAGACCGTGTGCAGTGCACC
CCGAACGCATGGAGGAGTATCCTGCTTATCAGGAGCTGGAGCAGATATCG
GATACTCTTGCGGAACAGATAGACAGCTGGGTTGCTGAGAATGCGGAGCA
GGACTTGGTGGCACTCGGGGAGCTTGGTTTGGAAGGCGATGATAAGATTT
ATGAAGAATGCTGGGGTGCTTGCCCAAACACCAAGGTAGGAGGATGGGTG
TACTGGACGCACGACGTTAGTTTGTGTACATGTACTGAATGTGGGAGCAA
AATGGAACACCTCCTTTCTATATCGTCTTTGGAATATGGCGGTGGGCTGG
TGTCGAGATGGTACCCGATAGACGAACCGCGAGAGCAAGCGCGTCAGGGA
ACAGAAATGTGGCTGGGTGACTCTGAAAGGTTTGTGCTGTTTGTTTGCAG
AGCATGCTCTCACTTTCCCATCAGGGGAAAGCTGGGGTAG
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