Ggra6397.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6397.t1
Unique Name	Ggra6397.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000861_pilon	contig	tig00000861_pilon:194383..195795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6397	Ggra6397	Gracilaria gracilis GNS1m male	gene	tig00000861_pilon 194383..195795 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6397.t1.start1	Ggra6397.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000861_pilon 194383..194385 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6397.t1.CDS1	Ggra6397.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000861_pilon 194383..195795 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6397.t1.exon1	Ggra6397.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000861_pilon 194383..195795 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6397.t1.stop1	Ggra6397.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000861_pilon 195793..195795 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6397.t1	Ggra6397.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000861_pilon 194383..195795 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000861_pilon:194383..195795+
coding sequence from alignment at tig00000861_pilon:194383..195795+

mRNA sequence

>Ggra6397.t1 ID=Ggra6397.t1|Name=Ggra6397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MNLSLVFFCAILLLCSVNAQRPARQRPERLRPERPAAPGLSREALFGRAR
GLANAPGTPLNSAQRETARQRLQRLRGGIPDAEPGEEPNIEELYNPMRDA
RCFNAPYDTSVPQSKLSSLFSDYVKIFNWGFNMPPSSPIFSFSENGVTNN
RFPGMCLRMAFHDNSIDPKFGEFSSYVTQRISVDNEWTGPNRFLETSGGD
ASVLTCRFERFHPNQNYDQTASRILFAFQTRIVPGLRGQSLMDKYQMSYA
DALHNCALAAVSWLNPGEGSSAKNQMRFGRKDACFVSGDARLAQDELSLD
GKNPLCGPTELLPPVTFSAKQSNQWFTSRGLPARQWLSFMGTHTTFDNFG
RTETLRRMPVPGDDYFTNYVGVPVHKPDVAAAEGDPENPGCDWIVNGEEK
FWPMSQADCALGIDVISDDPGLDQLENVMNSYISAPASWIRSDLVCAMRL
LGGRADERCDGTNPLFGSVY*

spliced messenger RNA

>Ggra6397.t1 ID=Ggra6397.t1|Name=Ggra6397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000861_pilon:194383..195795+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTGTCGCTGGTATTTTTCTGCGCCATCCTTCTGCTGTGCTCGGT
CAATGCACAGCGTCCCGCGAGACAGCGTCCTGAGAGACTCCGTCCTGAGA
GACCAGCCGCCCCAGGGCTCAGCCGAGAAGCACTATTTGGAAGGGCCCGA
GGTTTAGCAAATGCCCCTGGAACGCCCCTCAACTCTGCCCAAAGAGAGAC
CGCCCGCCAACGTTTGCAACGGCTCAGAGGCGGAATTCCTGATGCCGAAC
CCGGTGAGGAACCCAATATTGAGGAATTGTACAACCCAATGCGAGATGCC
CGGTGTTTTAATGCCCCGTATGACACTTCCGTACCGCAGTCCAAACTCTC
ATCTTTGTTCTCTGACTATGTCAAGATATTCAACTGGGGATTCAATATGC
CTCCTAGCTCACCAATATTCTCGTTCTCTGAGAATGGTGTGACCAACAAC
AGATTTCCCGGCATGTGCCTCCGAATGGCATTCCATGATAACTCCATTGA
TCCAAAATTTGGTGAGTTTTCCTCATATGTTACCCAACGCATCAGTGTTG
ATAACGAATGGACGGGTCCGAATCGGTTCTTGGAAACATCTGGAGGCGAC
GCATCCGTGTTGACCTGTCGCTTTGAGAGATTTCATCCGAACCAGAACTA
CGATCAAACCGCATCACGCATTCTTTTTGCTTTCCAAACACGCATTGTTC
CCGGATTGAGAGGTCAATCTCTCATGGACAAGTATCAAATGTCATACGCG
GACGCACTTCACAACTGTGCACTCGCAGCCGTTTCGTGGCTGAATCCGGG
GGAAGGCAGCAGCGCCAAGAATCAAATGCGGTTTGGTAGAAAAGATGCAT
GCTTCGTTTCTGGAGATGCGAGACTAGCCCAAGATGAGCTGAGTTTGGAT
GGGAAGAATCCTCTCTGTGGGCCGACCGAGCTTTTACCTCCGGTGACATT
CAGTGCTAAACAATCAAACCAATGGTTCACCTCTCGTGGATTACCTGCTC
GCCAATGGCTATCCTTCATGGGCACGCACACTACGTTTGACAACTTTGGG
AGAACCGAGACGCTGCGAAGGATGCCTGTACCTGGAGATGACTACTTTAC
CAACTACGTGGGTGTCCCAGTGCACAAGCCAGATGTTGCGGCGGCCGAAG
GCGATCCTGAGAATCCTGGATGTGATTGGATTGTGAATGGGGAGGAAAAG
TTCTGGCCAATGTCACAGGCTGATTGCGCACTCGGGATTGACGTTATTTC
GGATGATCCTGGTCTGGACCAACTAGAAAATGTGATGAATAGTTACATCA
GCGCCCCAGCTTCCTGGATTCGAAGCGACTTGGTGTGTGCCATGCGTTTG
CTGGGTGGACGTGCCGACGAACGATGTGATGGCACAAATCCTTTGTTTGG
TTCTGTGTATTAA

protein sequence of Ggra6397.t1

>Ggra6397.t1 ID=Ggra6397.t1|Name=Ggra6397.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MNLSLVFFCAILLLCSVNAQRPARQRPERLRPERPAAPGLSREALFGRAR
GLANAPGTPLNSAQRETARQRLQRLRGGIPDAEPGEEPNIEELYNPMRDA
RCFNAPYDTSVPQSKLSSLFSDYVKIFNWGFNMPPSSPIFSFSENGVTNN
RFPGMCLRMAFHDNSIDPKFGEFSSYVTQRISVDNEWTGPNRFLETSGGD
ASVLTCRFERFHPNQNYDQTASRILFAFQTRIVPGLRGQSLMDKYQMSYA
DALHNCALAAVSWLNPGEGSSAKNQMRFGRKDACFVSGDARLAQDELSLD
GKNPLCGPTELLPPVTFSAKQSNQWFTSRGLPARQWLSFMGTHTTFDNFG
RTETLRRMPVPGDDYFTNYVGVPVHKPDVAAAEGDPENPGCDWIVNGEEK
FWPMSQADCALGIDVISDDPGLDQLENVMNSYISAPASWIRSDLVCAMRL
LGGRADERCDGTNPLFGSVY*

mRNA from alignment at tig00000861_pilon:194383..195795+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6397.t1 ID=Ggra6397.t1|Name=Ggra6397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000861_pilon:194383..195795+ (Gracilaria gracilis GNS1m male)
ATGAATCTGTCGCTGGTATTTTTCTGCGCCATCCTTCTGCTGTGCTCGGT
CAATGCACAGCGTCCCGCGAGACAGCGTCCTGAGAGACTCCGTCCTGAGA
GACCAGCCGCCCCAGGGCTCAGCCGAGAAGCACTATTTGGAAGGGCCCGA
GGTTTAGCAAATGCCCCTGGAACGCCCCTCAACTCTGCCCAAAGAGAGAC
CGCCCGCCAACGTTTGCAACGGCTCAGAGGCGGAATTCCTGATGCCGAAC
CCGGTGAGGAACCCAATATTGAGGAATTGTACAACCCAATGCGAGATGCC
CGGTGTTTTAATGCCCCGTATGACACTTCCGTACCGCAGTCCAAACTCTC
ATCTTTGTTCTCTGACTATGTCAAGATATTCAACTGGGGATTCAATATGC
CTCCTAGCTCACCAATATTCTCGTTCTCTGAGAATGGTGTGACCAACAAC
AGATTTCCCGGCATGTGCCTCCGAATGGCATTCCATGATAACTCCATTGA
TCCAAAATTTGGTGAGTTTTCCTCATATGTTACCCAACGCATCAGTGTTG
ATAACGAATGGACGGGTCCGAATCGGTTCTTGGAAACATCTGGAGGCGAC
GCATCCGTGTTGACCTGTCGCTTTGAGAGATTTCATCCGAACCAGAACTA
CGATCAAACCGCATCACGCATTCTTTTTGCTTTCCAAACACGCATTGTTC
CCGGATTGAGAGGTCAATCTCTCATGGACAAGTATCAAATGTCATACGCG
GACGCACTTCACAACTGTGCACTCGCAGCCGTTTCGTGGCTGAATCCGGG
GGAAGGCAGCAGCGCCAAGAATCAAATGCGGTTTGGTAGAAAAGATGCAT
GCTTCGTTTCTGGAGATGCGAGACTAGCCCAAGATGAGCTGAGTTTGGAT
GGGAAGAATCCTCTCTGTGGGCCGACCGAGCTTTTACCTCCGGTGACATT
CAGTGCTAAACAATCAAACCAATGGTTCACCTCTCGTGGATTACCTGCTC
GCCAATGGCTATCCTTCATGGGCACGCACACTACGTTTGACAACTTTGGG
AGAACCGAGACGCTGCGAAGGATGCCTGTACCTGGAGATGACTACTTTAC
CAACTACGTGGGTGTCCCAGTGCACAAGCCAGATGTTGCGGCGGCCGAAG
GCGATCCTGAGAATCCTGGATGTGATTGGATTGTGAATGGGGAGGAAAAG
TTCTGGCCAATGTCACAGGCTGATTGCGCACTCGGGATTGACGTTATTTC
GGATGATCCTGGTCTGGACCAACTAGAAAATGTGATGAATAGTTACATCA
GCGCCCCAGCTTCCTGGATTCGAAGCGACTTGGTGTGTGCCATGCGTTTG
CTGGGTGGACGTGCCGACGAACGATGTGATGGCACAAATCCTTTGTTTGG
TTCTGTGTATTAA

Coding sequence (CDS) from alignment at tig00000861_pilon:194383..195795+

>Ggra6397.t1 ID=Ggra6397.t1|Name=Ggra6397.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000861_pilon:194383..195795+ (Gracilaria gracilis GNS1m male)
ATGAATCTGTCGCTGGTATTTTTCTGCGCCATCCTTCTGCTGTGCTCGGT
CAATGCACAGCGTCCCGCGAGACAGCGTCCTGAGAGACTCCGTCCTGAGA
GACCAGCCGCCCCAGGGCTCAGCCGAGAAGCACTATTTGGAAGGGCCCGA
GGTTTAGCAAATGCCCCTGGAACGCCCCTCAACTCTGCCCAAAGAGAGAC
CGCCCGCCAACGTTTGCAACGGCTCAGAGGCGGAATTCCTGATGCCGAAC
CCGGTGAGGAACCCAATATTGAGGAATTGTACAACCCAATGCGAGATGCC
CGGTGTTTTAATGCCCCGTATGACACTTCCGTACCGCAGTCCAAACTCTC
ATCTTTGTTCTCTGACTATGTCAAGATATTCAACTGGGGATTCAATATGC
CTCCTAGCTCACCAATATTCTCGTTCTCTGAGAATGGTGTGACCAACAAC
AGATTTCCCGGCATGTGCCTCCGAATGGCATTCCATGATAACTCCATTGA
TCCAAAATTTGGTGAGTTTTCCTCATATGTTACCCAACGCATCAGTGTTG
ATAACGAATGGACGGGTCCGAATCGGTTCTTGGAAACATCTGGAGGCGAC
GCATCCGTGTTGACCTGTCGCTTTGAGAGATTTCATCCGAACCAGAACTA
CGATCAAACCGCATCACGCATTCTTTTTGCTTTCCAAACACGCATTGTTC
CCGGATTGAGAGGTCAATCTCTCATGGACAAGTATCAAATGTCATACGCG
GACGCACTTCACAACTGTGCACTCGCAGCCGTTTCGTGGCTGAATCCGGG
GGAAGGCAGCAGCGCCAAGAATCAAATGCGGTTTGGTAGAAAAGATGCAT
GCTTCGTTTCTGGAGATGCGAGACTAGCCCAAGATGAGCTGAGTTTGGAT
GGGAAGAATCCTCTCTGTGGGCCGACCGAGCTTTTACCTCCGGTGACATT
CAGTGCTAAACAATCAAACCAATGGTTCACCTCTCGTGGATTACCTGCTC
GCCAATGGCTATCCTTCATGGGCACGCACACTACGTTTGACAACTTTGGG
AGAACCGAGACGCTGCGAAGGATGCCTGTACCTGGAGATGACTACTTTAC
CAACTACGTGGGTGTCCCAGTGCACAAGCCAGATGTTGCGGCGGCCGAAG
GCGATCCTGAGAATCCTGGATGTGATTGGATTGTGAATGGGGAGGAAAAG
TTCTGGCCAATGTCACAGGCTGATTGCGCACTCGGGATTGACGTTATTTC
GGATGATCCTGGTCTGGACCAACTAGAAAATGTGATGAATAGTTACATCA
GCGCCCCAGCTTCCTGGATTCGAAGCGACTTGGTGTGTGCCATGCGTTTG
CTGGGTGGACGTGCCGACGAACGATGTGATGGCACAAATCCTTTGTTTGG
TTCTGTGTATTAA