Ggra3170.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3170.t1
Unique Name	Ggra3170.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	607

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000120_pilon	contig	tig00000120_pilon:384318..386138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3170	Ggra3170	Gracilaria gracilis GNS1m male	gene	tig00000120_pilon 384318..386138 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3170.t1.start1	Ggra3170.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000120_pilon 384318..384320 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3170.t1.CDS1	Ggra3170.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000120_pilon 384318..386138 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3170.t1.exon1	Ggra3170.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000120_pilon 384318..386138 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3170.t1.stop1	Ggra3170.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000120_pilon 386136..386138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3170.t1	Ggra3170.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000120_pilon 384318..386138 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000120_pilon:384318..386138+
coding sequence from alignment at tig00000120_pilon:384318..386138+

mRNA sequence

>Ggra3170.t1 ID=Ggra3170.t1|Name=Ggra3170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=607bp
MIQRPPAYRISSTVFMNSKRPSRASNRKQKPNSRISSSVDDEDAPIAIQD
NTTAANAQDDLLDESEDKNFEEWSPVAEDDDDVSLEQLLLDDDEEEDKTL
ADGDILLNEEYEEDPADLAIDDAFDEEEGEEDEEDEDEEDGETEDEDVID
EDDELAAKADGEDFDDGMPIPTVGKRQKRTVSKTRSIPVKEVDDEENLDA
SEDGLDPIEEGFEPVFEIADVESDDSTSDLTAIGDESSTEDLDEQNAEDI
RNAANILSESGILGLGLGEGKKDAASVSTDEELEEDGEYDFDGLFDAKDE
DVDEEKEDNDDEIDGINAAEQQQERLDQEFALTSESSFGKIWELNEDTYV
TITDPGQAYAYELDEDDEEDQEMSTVRRGKQGGWSGGLASYPTSSDLPEG
SREWIARRSYELLAQSTPKEMFRWTKRHFSPPPAISDLYPQQERKPVPLG
KQTLKLSSPDSSSQWNPDNHQEKMNPVQTTEEKQEEEEAGESDDVTTDTT
ASKSYAGQTSAGDDEFELDRTALDRSVTFPSSFKFKIEATGEDFRDHIQR
IVENTLQREVEPLALSVEQEGKHERIEFNVTVQNSKEITDIFEALYSDER
VKRSYG*

spliced messenger RNA

>Ggra3170.t1 ID=Ggra3170.t1|Name=Ggra3170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000120_pilon:384318..386138+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACAACGGCCGCCTGCGTACCGGATATCCTCCACAGTTTTTATGAA
CAGTAAGCGTCCTTCAAGGGCTTCAAACCGGAAACAGAAACCCAACTCAC
GGATATCGTCATCGGTTGATGACGAAGACGCTCCAATTGCAATTCAAGAC
AATACAACCGCGGCGAATGCACAGGATGATCTTTTGGATGAGTCAGAAGA
TAAGAATTTTGAGGAGTGGTCCCCTGTTGCTGAGGATGACGATGATGTGT
CTCTAGAACAGCTGCTCCTCGATGATGATGAGGAGGAAGACAAGACTCTG
GCTGATGGCGATATTCTGTTAAATGAAGAGTATGAAGAGGATCCTGCGGA
CCTTGCGATTGACGATGCCTTTgatgaagaagaaggtgaagaggacgaag
aagacgaggatgaagaagatggagagacagaagatgaagaTGTTATCGAT
GAAGACGATGAACTGGCTGCAAAGGCTGACGGTGAAGATTTTGACGATGG
TATGCCAATTCCTACCGTAGGAAAACGGCAGAAACGCACTGTATCAAAAA
CAAGAAGTATCCCCGTGAAGGAGGTAGACGATGAGGAGAATTTGGATGCT
TCGGAAGATGGCCTAGACCCAATTGAAGAAGGCTTCGAACCTGTTTTTGA
AATTGCGGATGTTGAAAGTGATGATTCTACTTCAGACTTAACAGCAATAG
GCGATGAGAGTTCAACAGAAGATCTCGATGAACAAAACGCCGAAGATATC
AGAAACGCCGCAAATATCTTATCCGAAAGCGGAATCCTTGGTCTTGGTTT
GGGGGAGGGAAAGAAAGATGCAGCATCTGTGTCCACTGATGAAGAGTTGG
AAGAGGATGGAGAATATGACTTTGACGGGTTATTTGATGCCAAAGATGAA
GACGTTGATGAAGAAAAGGAAGACAATGATGATGAAATTGATGGGATTAA
TGCAGCAGAGCAGCAACAAGAACGACTAGACCAAGAATTCGCGCTGACAT
CTGAATCAAGTTTTGGCAAGATATGGGAACTAAATGAGGACACCTATGTT
ACCATCACAGATCCGGGGCAGGCTTATGCTTATGAGTTAGATGAAGATGA
TGAAGAAGACCAAGAAATGTCAACAGTTAGGAGGGGAAAACAAGGGGGGT
GGAGTGGAGGCCTTGCATCGTATCCCACTTCGTCAGATCTGCCTGAAGGT
TCAAGGGAATGGATTGCACGTCGTTCATACGAACTACTCGCACAATCTAC
ACCTAAAGAAATGTTTCGGTGGACAAAACGCCATTTTTCTCCTCCACCAG
CAATTTCCGATCTGTACCCGCAACAGGAACGAAAACCAGTACCCCTCGGT
AAGCAAACTCTAAAGCTTTCATCGCCAGACTCTTCCTCTCAGTGGAATCC
TGATAACCATCAGGAAAAGATGAACCCTGTACAAACCACTGAAGAGAAGC
AGGAAGAGGAGGAGGCAGGCGAATCTGACGACGTTACAACCGATACAACA
GCGAGTAAGTCATATGCTGGTCAGACATCGGCAGGAGACGACGAATTCGA
ACTCGATAGAACTGCTTTGGATCGATCAGTGACATTCCCAAGCTCGTTTA
AGTTCAAAATAGAAGCCACAGGTGAAGATTTTCGGGATCATATACAACGG
ATTGTGGAGAACACTTTGCAACGGGAAGTGGAGCCGCTAGCATTATCAGT
GGAGCAAGAAGGAAAACATGAACGAATCGAGTTCAACGTAACTGTTCAGA
ACTCGAAGGAAATCACGGACATTTTCGAAGCTCTTTATAGCGACGAACGC
GTTAAACGTAGCTATGGGTAG

protein sequence of Ggra3170.t1

>Ggra3170.t1 ID=Ggra3170.t1|Name=Ggra3170.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=607bp
MIQRPPAYRISSTVFMNSKRPSRASNRKQKPNSRISSSVDDEDAPIAIQD
NTTAANAQDDLLDESEDKNFEEWSPVAEDDDDVSLEQLLLDDDEEEDKTL
ADGDILLNEEYEEDPADLAIDDAFDEEEGEEDEEDEDEEDGETEDEDVID
EDDELAAKADGEDFDDGMPIPTVGKRQKRTVSKTRSIPVKEVDDEENLDA
SEDGLDPIEEGFEPVFEIADVESDDSTSDLTAIGDESSTEDLDEQNAEDI
RNAANILSESGILGLGLGEGKKDAASVSTDEELEEDGEYDFDGLFDAKDE
DVDEEKEDNDDEIDGINAAEQQQERLDQEFALTSESSFGKIWELNEDTYV
TITDPGQAYAYELDEDDEEDQEMSTVRRGKQGGWSGGLASYPTSSDLPEG
SREWIARRSYELLAQSTPKEMFRWTKRHFSPPPAISDLYPQQERKPVPLG
KQTLKLSSPDSSSQWNPDNHQEKMNPVQTTEEKQEEEEAGESDDVTTDTT
ASKSYAGQTSAGDDEFELDRTALDRSVTFPSSFKFKIEATGEDFRDHIQR
IVENTLQREVEPLALSVEQEGKHERIEFNVTVQNSKEITDIFEALYSDER
VKRSYG*

mRNA from alignment at tig00000120_pilon:384318..386138+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3170.t1 ID=Ggra3170.t1|Name=Ggra3170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000120_pilon:384318..386138+ (Gracilaria gracilis GNS1m male)
ATGATACAACGGCCGCCTGCGTACCGGATATCCTCCACAGTTTTTATGAA
CAGTAAGCGTCCTTCAAGGGCTTCAAACCGGAAACAGAAACCCAACTCAC
GGATATCGTCATCGGTTGATGACGAAGACGCTCCAATTGCAATTCAAGAC
AATACAACCGCGGCGAATGCACAGGATGATCTTTTGGATGAGTCAGAAGA
TAAGAATTTTGAGGAGTGGTCCCCTGTTGCTGAGGATGACGATGATGTGT
CTCTAGAACAGCTGCTCCTCGATGATGATGAGGAGGAAGACAAGACTCTG
GCTGATGGCGATATTCTGTTAAATGAAGAGTATGAAGAGGATCCTGCGGA
CCTTGCGATTGACGATGCCTTTgatgaagaagaaggtgaagaggacgaag
aagacgaggatgaagaagatggagagacagaagatgaagaTGTTATCGAT
GAAGACGATGAACTGGCTGCAAAGGCTGACGGTGAAGATTTTGACGATGG
TATGCCAATTCCTACCGTAGGAAAACGGCAGAAACGCACTGTATCAAAAA
CAAGAAGTATCCCCGTGAAGGAGGTAGACGATGAGGAGAATTTGGATGCT
TCGGAAGATGGCCTAGACCCAATTGAAGAAGGCTTCGAACCTGTTTTTGA
AATTGCGGATGTTGAAAGTGATGATTCTACTTCAGACTTAACAGCAATAG
GCGATGAGAGTTCAACAGAAGATCTCGATGAACAAAACGCCGAAGATATC
AGAAACGCCGCAAATATCTTATCCGAAAGCGGAATCCTTGGTCTTGGTTT
GGGGGAGGGAAAGAAAGATGCAGCATCTGTGTCCACTGATGAAGAGTTGG
AAGAGGATGGAGAATATGACTTTGACGGGTTATTTGATGCCAAAGATGAA
GACGTTGATGAAGAAAAGGAAGACAATGATGATGAAATTGATGGGATTAA
TGCAGCAGAGCAGCAACAAGAACGACTAGACCAAGAATTCGCGCTGACAT
CTGAATCAAGTTTTGGCAAGATATGGGAACTAAATGAGGACACCTATGTT
ACCATCACAGATCCGGGGCAGGCTTATGCTTATGAGTTAGATGAAGATGA
TGAAGAAGACCAAGAAATGTCAACAGTTAGGAGGGGAAAACAAGGGGGGT
GGAGTGGAGGCCTTGCATCGTATCCCACTTCGTCAGATCTGCCTGAAGGT
TCAAGGGAATGGATTGCACGTCGTTCATACGAACTACTCGCACAATCTAC
ACCTAAAGAAATGTTTCGGTGGACAAAACGCCATTTTTCTCCTCCACCAG
CAATTTCCGATCTGTACCCGCAACAGGAACGAAAACCAGTACCCCTCGGT
AAGCAAACTCTAAAGCTTTCATCGCCAGACTCTTCCTCTCAGTGGAATCC
TGATAACCATCAGGAAAAGATGAACCCTGTACAAACCACTGAAGAGAAGC
AGGAAGAGGAGGAGGCAGGCGAATCTGACGACGTTACAACCGATACAACA
GCGAGTAAGTCATATGCTGGTCAGACATCGGCAGGAGACGACGAATTCGA
ACTCGATAGAACTGCTTTGGATCGATCAGTGACATTCCCAAGCTCGTTTA
AGTTCAAAATAGAAGCCACAGGTGAAGATTTTCGGGATCATATACAACGG
ATTGTGGAGAACACTTTGCAACGGGAAGTGGAGCCGCTAGCATTATCAGT
GGAGCAAGAAGGAAAACATGAACGAATCGAGTTCAACGTAACTGTTCAGA
ACTCGAAGGAAATCACGGACATTTTCGAAGCTCTTTATAGCGACGAACGC
GTTAAACGTAGCTATGGGTAG

Coding sequence (CDS) from alignment at tig00000120_pilon:384318..386138+

>Ggra3170.t1 ID=Ggra3170.t1|Name=Ggra3170.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1821bp|location=Sequence derived from alignment at tig00000120_pilon:384318..386138+ (Gracilaria gracilis GNS1m male)
ATGATACAACGGCCGCCTGCGTACCGGATATCCTCCACAGTTTTTATGAA
CAGTAAGCGTCCTTCAAGGGCTTCAAACCGGAAACAGAAACCCAACTCAC
GGATATCGTCATCGGTTGATGACGAAGACGCTCCAATTGCAATTCAAGAC
AATACAACCGCGGCGAATGCACAGGATGATCTTTTGGATGAGTCAGAAGA
TAAGAATTTTGAGGAGTGGTCCCCTGTTGCTGAGGATGACGATGATGTGT
CTCTAGAACAGCTGCTCCTCGATGATGATGAGGAGGAAGACAAGACTCTG
GCTGATGGCGATATTCTGTTAAATGAAGAGTATGAAGAGGATCCTGCGGA
CCTTGCGATTGACGATGCCTTTgatgaagaagaaggtgaagaggacgaag
aagacgaggatgaagaagatggagagacagaagatgaagaTGTTATCGAT
GAAGACGATGAACTGGCTGCAAAGGCTGACGGTGAAGATTTTGACGATGG
TATGCCAATTCCTACCGTAGGAAAACGGCAGAAACGCACTGTATCAAAAA
CAAGAAGTATCCCCGTGAAGGAGGTAGACGATGAGGAGAATTTGGATGCT
TCGGAAGATGGCCTAGACCCAATTGAAGAAGGCTTCGAACCTGTTTTTGA
AATTGCGGATGTTGAAAGTGATGATTCTACTTCAGACTTAACAGCAATAG
GCGATGAGAGTTCAACAGAAGATCTCGATGAACAAAACGCCGAAGATATC
AGAAACGCCGCAAATATCTTATCCGAAAGCGGAATCCTTGGTCTTGGTTT
GGGGGAGGGAAAGAAAGATGCAGCATCTGTGTCCACTGATGAAGAGTTGG
AAGAGGATGGAGAATATGACTTTGACGGGTTATTTGATGCCAAAGATGAA
GACGTTGATGAAGAAAAGGAAGACAATGATGATGAAATTGATGGGATTAA
TGCAGCAGAGCAGCAACAAGAACGACTAGACCAAGAATTCGCGCTGACAT
CTGAATCAAGTTTTGGCAAGATATGGGAACTAAATGAGGACACCTATGTT
ACCATCACAGATCCGGGGCAGGCTTATGCTTATGAGTTAGATGAAGATGA
TGAAGAAGACCAAGAAATGTCAACAGTTAGGAGGGGAAAACAAGGGGGGT
GGAGTGGAGGCCTTGCATCGTATCCCACTTCGTCAGATCTGCCTGAAGGT
TCAAGGGAATGGATTGCACGTCGTTCATACGAACTACTCGCACAATCTAC
ACCTAAAGAAATGTTTCGGTGGACAAAACGCCATTTTTCTCCTCCACCAG
CAATTTCCGATCTGTACCCGCAACAGGAACGAAAACCAGTACCCCTCGGT
AAGCAAACTCTAAAGCTTTCATCGCCAGACTCTTCCTCTCAGTGGAATCC
TGATAACCATCAGGAAAAGATGAACCCTGTACAAACCACTGAAGAGAAGC
AGGAAGAGGAGGAGGCAGGCGAATCTGACGACGTTACAACCGATACAACA
GCGAGTAAGTCATATGCTGGTCAGACATCGGCAGGAGACGACGAATTCGA
ACTCGATAGAACTGCTTTGGATCGATCAGTGACATTCCCAAGCTCGTTTA
AGTTCAAAATAGAAGCCACAGGTGAAGATTTTCGGGATCATATACAACGG
ATTGTGGAGAACACTTTGCAACGGGAAGTGGAGCCGCTAGCATTATCAGT
GGAGCAAGAAGGAAAACATGAACGAATCGAGTTCAACGTAACTGTTCAGA
ACTCGAAGGAAATCACGGACATTTTCGAAGCTCTTTATAGCGACGAACGC
GTTAAACGTAGCTATGGGTAG