Ggra3170.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3170.t1
Unique NameGgra3170.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length607
Homology
BLAST of Ggra3170.t1 vs. uniprot
Match: A0A2V3IHA7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHA7_9FLOR)

HSP 1 Score: 447 bits (1151), Expect = 4.810e-147
Identity = 297/636 (46.70%), Postives = 406/636 (63.84%), Query Frame = 0
Query:    1 MIQRPPAYRISSTVFMNSKRPSRASNRKQKPNSRISSSVDDEDAPIAIQDNTTAANAQDDLLDESEDKNFEEWSPVAEDXXXXXXXXXXXXXXXXXDKTLADGDILLNEEYEEDPADLAIDDAFDEEEGXXXXXXXXXXXXXXXXXXXXXXXDELAAKADGEDFD-DGMPIPTVGKRQKRTVSKTRSIPVKEVDDEENLDASEDXXXXXXXXXXXVFEIADVESDDSTSDLTAIGDESSTEDLDEQNAEDIRNAANILSESGILGLGLGEGKKDAASVS--------------TDEELEEDGEYDFDGLFDAKDEDVDEEKED----NDDEIDGINAAEQQQERLDQEFALTSESSFGKIWELNEDTYVTITDPGQAYAYELDEDDEEDQEMSTVRRGKQGGWSGGLASYPTSSDLPEGSREWIARRSYELLAQSTPKEMFRWTKRHFSPPPAISDLYPQQERKPVPLGKQTLKLSSPDSSS--------QWNPDNHQEK--MNPVQTTEEKQXXXXXXXXXXVTTDTTASKSYAGQTSAG-DDEFELDRTALDRSVTFPSSFKFKIEATGEDFRDHIQRIVENTLQREVEPLALSVEQEGKHERIEFNVTVQNSKEITDIFEALYSDERVKRSYG 606
            M QR P YRISSTV MN+KR  R SN K +      S++ DE+    +Q+    +  Q+ LL   E++  E WSPVA D                 ++TL D +ILL+ +++ED  DL ++D F+E++  X         XXXXXXXXXXX  ELAA+A   DFD D +PIP V KR+ R+ S++ ++ + ++D+++N+D+SED           VFE+ D   D+ ++ LT + DE  TE+ DE++AEDIRNAANILS+SGILG+GLGE + D  S S               + EL  D + DF+ L   +D+   EEKE+      DE++ I+A        D E+ LT+ESS G++WELNEDTYVTIT+PG+AY YELDE+DEEDQEMSTVRRGKQGGWSGGLASYP SSDLP GS+EWIARRSYEL+A+S+  +MFRWTKRH + PP I  LYP +  +PVPLGKQ LKLS+P++S+        Q N    +E+  M P++   +            +      S     +   G +D FE DR+A+DRS+TFP  +KFKIE +GE F + +Q IV+NTL R++E L L+VE+ G+++R+EFN+T++NSKEITD+F+AL +D R+KRSYG
Sbjct:    1 MTQRAPTYRISSTVVMNTKRRPRTSNGKSESEPSRPSAISDENLS-GVQE--IESGEQEVLLAGPENEALEGWSPVAADEGDVPIEALLLGEDEA-EETLDDEEILLDGDFDEDSGDLNVEDVFEEDDEAXDDEAEGIDEXXXXXXXXXXX--ELAAQASSGDFDEDEIPIPGVQKRRVRSSSRSGTVTLDDIDEDDNIDSSEDVLDPLADGFEPVFEVGDSGRDEPSASLTTVKDEQRTEEFDEESAEDIRNAANILSKSGILGIGLGEAETDDISQSQANSVALSDNDSTTVNAELSGD-DLDFEKLLSFEDKPETEEKEEVVDKEPDEVEDIDAD------YDDEYTLTTESSVGRVWELNEDTYVTITEPGEAYPYELDEEDEEDQEMSTVRRGKQGGWSGGLASYPASSDLPVGSKEWIARRSYELIAESSAVDMFRWTKRHLTAPPLIDGLYPDERPEPVPLGKQILKLSTPETSASVTGTGLFQENLSATEEEGTMAPMRGEAQDDEGLEDYVAEILVEPGNGSGPEDEKKRRGVEDAFEKDRSAMDRSMTFPYVYKFKIEGSGEGFPECVQDIVKNTLGRDIEDLPLAVERSGRYDRVEFNLTLENSKEITDLFDALRTDARIKRSYG 623          
BLAST of Ggra3170.t1 vs. uniprot
Match: R7QM30 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM30_CHOCR)

HSP 1 Score: 246 bits (629), Expect = 6.740e-70
Identity = 206/581 (35.46%), Postives = 302/581 (51.98%), Query Frame = 0
Query:   53 TAANAQDDLLDESEDKNFEEWSPVAEDXXXXXXXXXXXXXXXXXDKTLADGDILLNEEYEEDPADLAIDDAFDEEE------GXXXXXXXXXXXXXXXXXXXXXXXDELAAKADGEDFDDGMPIPTVGKRQKRTVSKTRS---IPVKEVDDEENLDASEDXXXXXXXXXXXVFEIADVESDDSTSDLTAIGDESSTEDLDEQNAEDIRNAANILSESGILGLGLGEGKKDAASVSTD------------EELEEDGEYDFD-GLFDAKDEDVDEEKEDNDDEIDGINAAEQQQER-----LDQEFALTSESSFGKIWELNEDTYVTITDPGQAYAYELDEDDEEDQEMSTVRRGKQGGWSGGLASYPTSSDLPEGSREWIARRSYELLAQSTPKEMFRWTKRHFSPPPAISDLYPQQERKPVPLGKQTLKLSSPDSSSQWNPDNHQEKMNPVQTTEEKQXXXXXXXXXXVTTDTTASKSYAGQTSAGDDEFELDRTALDRSVTFPSSFKFKIEATGEDFRDHIQRIVENTLQREVEPLALSVEQEGKHERIEFNVTVQNSKEITDIFEALYSDERVKRSYG 606
            T++N +D LL + +D+ F EW+  AE                      AD DI+     ++ PA   ++D  D EE      G       XXXXXXXXXXXXXXXX ELAA+AD ED++D +PI T+ KR  R  + +R    +   +VDD +++  +++           +F+      ++    +  + +E   E +DE++ EDIR+AA+ILS SG+LGLG+  GK+   S  T               L +  +YD +  L D  DED                + E   +            LTS+SS G+IWELN+D YVTIT+PGQAYAYELDE+      MST+RRGKQGGWSGGLASY ++ D+PEGS EW+ARR+YEL+A+S   EMF+WT+RH  PPP I  LYP     P  + +  L+ S+PD  +                               V TD+++ +   G+      E      ALDR+V FP  +KFK+E +G+D  D +    E  L R V   A+ V+  G+++R+E  V V +++++T++++ L ++  VK S+G
Sbjct:   73 TSSNEKDSLLIDPDDREFVEWASTAERDVPTELPDE------------ADEDIIDLVTIDDGPAPPILEDEQDNEEVELEIVGENVDDEDXXXXXXXXXXXXXXXXXELAAQADAEDYEDDIPIATLSKRGGRISTGSRMSGPLAAVDVDDNDDIXXADEILETIDDDIPPIFDGPAALEEEVRPAIDGVDEELFVE-VDEESEEDIRSAADILSNSGLLGLGVEGGKRADMSEVTSFAMGGVEGPARPPALAQPEQYDDEVALLDVDDEDXXXXXXXXXXXXXXXQSLESYMDADXXXXXXXXIPLTSKSSSGRIWELNDDNYVTITEPGQAYAYELDEEXXXXXXMSTMRRGKQGGWSGGLASY-SARDMPEGSPEWVARRAYELVAESNQVEMFQWTRRHRGPPPIIDKLYPADPPPPPRIPRTRLQFSTPDIDAS-----------------------------IVGTDSSSVEDEQGRKRTPAPEKVEGSHALDRAVNFPCQYKFKVEGSGDDLIDALIADTEKILGRPVPDSAVHVQPAGRYKRVEIMVEVTSARQVTNLYDTLRNNSGVKYSFG 610          
BLAST of Ggra3170.t1 vs. uniprot
Match: A0A1X6NLQ4 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLQ4_PORUM)

HSP 1 Score: 92.4 bits (228), Expect = 6.760e-16
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = 0
Query:  329 EFALTSESSFGKIWELNEDTYVTITDPGQAYAY---ELDEDDEEDQ--------EMSTVRRGKQGGWSGGLASYPTSSD----LPEGSREWIARRSYELLAQSTPKEMFRWTKRHFSPPPAISDLYPQQERKPVPLGKQTLKL 456
            EF +T ++SFG++W LN+D YVTIT+PG+ +A+   ++   DEED         E    RR      +   +++P +      +  GS+EW AR +YE    + P EM+RW+++H +PP  + +L+P +  +   L + TL++
Sbjct:  301 EFGVTQDTSFGRVWALNDDNYVTITEPGEGFAFGDADVAATDEEDNGGGSNALHEHDATRRATPAWGASTASAWPAAMGGGVAMDVGSKEWAARAAYERCTSAPPVEMYRWSRKHSTPPAGMEELFPYEAAELPKLARLTLEI 443          
The following BLAST results are available for this feature:
BLAST of Ggra3170.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IHA74.810e-14746.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QM306.740e-7035.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NLQ46.760e-1632.87Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 302..322
NoneNo IPR availableGENE3D3.30.70.260coord: 520..603
e-value: 6.9E-9
score: 38.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 421..522
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 454..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..395
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 495..509
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..33
IPR007454Uncharacterised protein family UPF0250PFAMPF04359DUF493coord: 527..602
e-value: 1.0E-7
score: 32.4
IPR027471YbeD-like domain superfamilySUPERFAMILY117991YbeD/HP0495-likecoord: 523..602

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:384318..386138 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3170.t1Ggra3170.t1Gracilaria gracilis GNS1m malemRNAtig00000120_pilon 384318..386138 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3170.t1 ID=Ggra3170.t1|Name=Ggra3170.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=607bp
MIQRPPAYRISSTVFMNSKRPSRASNRKQKPNSRISSSVDDEDAPIAIQD
NTTAANAQDDLLDESEDKNFEEWSPVAEDDDDVSLEQLLLDDDEEEDKTL
ADGDILLNEEYEEDPADLAIDDAFDEEEGEEDEEDEDEEDGETEDEDVID
EDDELAAKADGEDFDDGMPIPTVGKRQKRTVSKTRSIPVKEVDDEENLDA
SEDGLDPIEEGFEPVFEIADVESDDSTSDLTAIGDESSTEDLDEQNAEDI
RNAANILSESGILGLGLGEGKKDAASVSTDEELEEDGEYDFDGLFDAKDE
DVDEEKEDNDDEIDGINAAEQQQERLDQEFALTSESSFGKIWELNEDTYV
TITDPGQAYAYELDEDDEEDQEMSTVRRGKQGGWSGGLASYPTSSDLPEG
SREWIARRSYELLAQSTPKEMFRWTKRHFSPPPAISDLYPQQERKPVPLG
KQTLKLSSPDSSSQWNPDNHQEKMNPVQTTEEKQEEEEAGESDDVTTDTT
ASKSYAGQTSAGDDEFELDRTALDRSVTFPSSFKFKIEATGEDFRDHIQR
IVENTLQREVEPLALSVEQEGKHERIEFNVTVQNSKEITDIFEALYSDER
VKRSYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007454UPF0250
IPR027471YbeD-like_sf