Ggra3036.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3036.t1
Unique NameGgra3036.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:1019210..1019695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog69781.S7Z673
Preferred nameYET3
PFAMsBap31
Max annot lvl4751|Fungi
KEGG koko:K14009,ko:K20405
KEGG Pathwayko04141,ko04150,ko05165,map04141,map04150,map05165
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006810,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0031224,GO:0031984,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0070973,GO:0098827
Evalue1.13e-06
EggNOG OGsKOG1962@1|root,KOG1962@2759|Eukaryota,39VIV@33154|Opisthokonta,3NZWT@4751|Fungi,3QSW4@4890|Ascomycota,20DR2@147545|Eurotiomycetes,3S6GZ@5042|Eurotiales
DescriptionBAP31 domain protein
COG categoryU
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3036Ggra3036Gracilaria gracilis GNS1m malegenetig00000858_pilon 1019210..1019695 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3036.t1.start1Ggra3036.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 1019210..1019212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3036.t1.CDS1Ggra3036.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 1019210..1019695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3036.t1.exon1Ggra3036.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 1019210..1019695 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3036.t1.stop1Ggra3036.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 1019693..1019695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3036.t1Ggra3036.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 1019210..1019695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3036.t1 ID=Ggra3036.t1|Name=Ggra3036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MSLLWKSVSIVLVVELVILLALCAPLPWGVRKNISRWIFRVNAREKLNTL
GKYVTFALFLALAESINGLRIAAERSQRQQEGQFLQDPGFVTLATDYRWQ
KVRAERNFYLAGFAIVALVAIARLVRLASIEVQLRDRIKSYNGNKPISET
GETIGEESKNN*
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spliced messenger RNA

>Ggra3036.t1 ID=Ggra3036.t1|Name=Ggra3036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000858_pilon:1019210..1019695+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTGTTATGGAAATCGGTTTCCATTGTGCTTGTTGTCGAGCTTGT
AATCCTGCTGGCGTTGTGCGCACCGCTGCCATGGGGCGTCCGCAAGAACA
TATCGAGATGGATCTTTCGAGTCAATGCCCGAGAGAAGCTAAACACCTTG
GGCAAATATGTCACTTTCGCACTTTTTCTGGCTTTGGCAGAAAGTATCAA
CGGGCTTCGCATTGCCGCCGAACGCTCGCAAAGACAACAGGAGGGACAAT
TTCTCCAGGACCCTGGGTTTGTGACACTGGCCACTGACTATCGATGGCAA
AAAGTTCGAGCAGAACGGAATTTCTACCTCGCCGGCTTCGCCATAGTGGC
ACTGGTAGCCATAGCCCGATTAGTACGTCTTGCTTCCATAGAGGTGCAAC
TCCGAGATCGAATCAAGTCCTACAATGGAAACAAGCCAATTTCAGAGACA
GGAGAAACCATAGGCGAGGAAAGCAAAAACAATTAG
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protein sequence of Ggra3036.t1

>Ggra3036.t1 ID=Ggra3036.t1|Name=Ggra3036.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MSLLWKSVSIVLVVELVILLALCAPLPWGVRKNISRWIFRVNAREKLNTL
GKYVTFALFLALAESINGLRIAAERSQRQQEGQFLQDPGFVTLATDYRWQ
KVRAERNFYLAGFAIVALVAIARLVRLASIEVQLRDRIKSYNGNKPISET
GETIGEESKNN*
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mRNA from alignment at tig00000858_pilon:1019210..1019695+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3036.t1 ID=Ggra3036.t1|Name=Ggra3036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000858_pilon:1019210..1019695+ (Gracilaria gracilis GNS1m male)
ATGTCGTTGTTATGGAAATCGGTTTCCATTGTGCTTGTTGTCGAGCTTGT
AATCCTGCTGGCGTTGTGCGCACCGCTGCCATGGGGCGTCCGCAAGAACA
TATCGAGATGGATCTTTCGAGTCAATGCCCGAGAGAAGCTAAACACCTTG
GGCAAATATGTCACTTTCGCACTTTTTCTGGCTTTGGCAGAAAGTATCAA
CGGGCTTCGCATTGCCGCCGAACGCTCGCAAAGACAACAGGAGGGACAAT
TTCTCCAGGACCCTGGGTTTGTGACACTGGCCACTGACTATCGATGGCAA
AAAGTTCGAGCAGAACGGAATTTCTACCTCGCCGGCTTCGCCATAGTGGC
ACTGGTAGCCATAGCCCGATTAGTACGTCTTGCTTCCATAGAGGTGCAAC
TCCGAGATCGAATCAAGTCCTACAATGGAAACAAGCCAATTTCAGAGACA
GGAGAAACCATAGGCGAGGAAAGCAAAAACAATTAG
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Coding sequence (CDS) from alignment at tig00000858_pilon:1019210..1019695+

>Ggra3036.t1 ID=Ggra3036.t1|Name=Ggra3036.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000858_pilon:1019210..1019695+ (Gracilaria gracilis GNS1m male)
ATGTCGTTGTTATGGAAATCGGTTTCCATTGTGCTTGTTGTCGAGCTTGT
AATCCTGCTGGCGTTGTGCGCACCGCTGCCATGGGGCGTCCGCAAGAACA
TATCGAGATGGATCTTTCGAGTCAATGCCCGAGAGAAGCTAAACACCTTG
GGCAAATATGTCACTTTCGCACTTTTTCTGGCTTTGGCAGAAAGTATCAA
CGGGCTTCGCATTGCCGCCGAACGCTCGCAAAGACAACAGGAGGGACAAT
TTCTCCAGGACCCTGGGTTTGTGACACTGGCCACTGACTATCGATGGCAA
AAAGTTCGAGCAGAACGGAATTTCTACCTCGCCGGCTTCGCCATAGTGGC
ACTGGTAGCCATAGCCCGATTAGTACGTCTTGCTTCCATAGAGGTGCAAC
TCCGAGATCGAATCAAGTCCTACAATGGAAACAAGCCAATTTCAGAGACA
GGAGAAACCATAGGCGAGGAAAGCAAAAACAATTAG
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