Ggra2001.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2001.t1
Unique NameGgra2001.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:119516..120616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002587418.1
PFAMsC2
Max annot lvl33208|Metazoa
Evalue4.83e-11
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,3ABBM@33154|Opisthokonta,3BV45@33208|Metazoa,3DBCN@33213|Bilateria,48GVD@7711|Chordata
DescriptionC2 domain
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2001Ggra2001Gracilaria gracilis GNS1m malegenetig00000925_pilon 119516..120616 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2001.t1.stop1Ggra2001.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 119516..119518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2001.t1.CDS1Ggra2001.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 119516..120616 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2001.t1.exon1Ggra2001.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 119516..120616 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2001.t1.start1Ggra2001.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 120614..120616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2001.t1Ggra2001.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 119516..120616 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2001.t1 ID=Ggra2001.t1|Name=Ggra2001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=367bp
MSEIMHKSFSEHTLSSVPSVDDDNMSVDSDMTAASNLTVTRTITRLEDFP
KHKPPPIGTVLEEETPKPVQLIVEFLGGSTVGSESTRDYIDVLYSEPMEV
SVECQFLPKIDLFSNTDPFVVMYMRDTPHDQWRHIGRTEALTNCHFPRFV
TKFSFSALPDQDMDKELLVKVYGKGSMKKAISLGHAMCSVWDIVVAPGQC
KVMKMDSINQKKDTWVILSGDTKRQRGADRIVNINVKFDKSAKPRAKTFF
LLNRALKKARWTPVFRSESHASPNREFKTAVTTFADLFGAEDSKPMRLEF
YQKRSAIDPKLIGFVQVSVKQLMQMEEGKVLQWWSGQDGTAPGLVVLAKK
EITDEKIDLWFAVTNE*
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spliced messenger RNA

>Ggra2001.t1 ID=Ggra2001.t1|Name=Ggra2001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000925_pilon:119516..120616- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAAATTATGCACAAGTCCTTCTCGGAGCACACGCTCAGCTCCGT
GCCGTCCGTGGATGATGATAATATGTCCGTCGATTCCGACATGACCGCCG
CGTCCAACCTCACAGTCACGCGCACCATCACTCGTCTGGAAGACTTTCCG
AAGCACAAGCCGCCTCCAATCGGTACCGTGCTGGAGGAGGAGACGCCCAA
GCCTGTGCAGCTCATCGTCGAGTTTCTGGGCGGAAGTACCGTAGGCTCTG
AGAGCACGCGCGATTATATTGATGTGCTTTACTCAGAGCCTATGGAAGTG
TCTGTTGAGTGCCAGTTTCTGCCTAAGATTGACCTCTTTTCCAACACTGA
TCCCTTCGTCGTCATGTACATGCGAGACACCCCGCACGATCAGTGGCGAC
ATATCGGACGCACCGAAGCGCTCACCAACTGCCATTTTCCGCGCTTCGTC
ACCAAGTTTTCGTTCTCTGCACTGCCCGACCAGGACATGGACAAGGAGCT
GTTGGTCAAAGTGTATGGCAAGGGCTCTATGAAGAAGGCCATCTCTCTCG
GTCACGCAATGTGTTCCGTGTGGGATATTGTGGTTGCGCCAGGCCAATGT
AAGGTCATGAAGATGGACTCTATTAATCAGAAGAAGGATACGTGGGTCAT
TCTTTCTGGAGATACCAAACGCCAGCGCGGAGCGGACCGTATCGTCAACA
TCAACGTCAAGTTCGACAAGTCAGCGAAGCCTCGCGCAAAAACTTTCTTC
CTGCTCAACCGCGCGCTGAAGAAGGCAAGGTGGACGCCTGTATTCCGCTC
TGAGAGCCATGCGAGTCCCAATCGAGAGTTCAAGACAGCTGTTACCACGT
TTGCTGACTTGTTCGGTGCTGAAGACAGTAAGCCGATGAGACTTGAGTTC
TATCAGAAGAGAAGTGCCATAGATCCGAAACTGATCGGTTTTGTTCAAGT
GTCTGTGAAGCAACTGATGCAAATGGAAGAGGGCAAAGTTTTGCAATGGT
GGTCTGGGCAGGATGGCACTGCGCCTGGGCTAGTGGTGCTTGCCAAGAAG
GAAATCACAGACGAGAAAATTGACCTCTGGTTCGCCGTCACCAACGAATA
G
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protein sequence of Ggra2001.t1

>Ggra2001.t1 ID=Ggra2001.t1|Name=Ggra2001.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MSEIMHKSFSEHTLSSVPSVDDDNMSVDSDMTAASNLTVTRTITRLEDFP
KHKPPPIGTVLEEETPKPVQLIVEFLGGSTVGSESTRDYIDVLYSEPMEV
SVECQFLPKIDLFSNTDPFVVMYMRDTPHDQWRHIGRTEALTNCHFPRFV
TKFSFSALPDQDMDKELLVKVYGKGSMKKAISLGHAMCSVWDIVVAPGQC
KVMKMDSINQKKDTWVILSGDTKRQRGADRIVNINVKFDKSAKPRAKTFF
LLNRALKKARWTPVFRSESHASPNREFKTAVTTFADLFGAEDSKPMRLEF
YQKRSAIDPKLIGFVQVSVKQLMQMEEGKVLQWWSGQDGTAPGLVVLAKK
EITDEKIDLWFAVTNE*
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mRNA from alignment at tig00000925_pilon:119516..120616-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2001.t1 ID=Ggra2001.t1|Name=Ggra2001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000925_pilon:119516..120616- (Gracilaria gracilis GNS1m male)
ATGTCGGAAATTATGCACAAGTCCTTCTCGGAGCACACGCTCAGCTCCGT
GCCGTCCGTGGATGATGATAATATGTCCGTCGATTCCGACATGACCGCCG
CGTCCAACCTCACAGTCACGCGCACCATCACTCGTCTGGAAGACTTTCCG
AAGCACAAGCCGCCTCCAATCGGTACCGTGCTGGAGGAGGAGACGCCCAA
GCCTGTGCAGCTCATCGTCGAGTTTCTGGGCGGAAGTACCGTAGGCTCTG
AGAGCACGCGCGATTATATTGATGTGCTTTACTCAGAGCCTATGGAAGTG
TCTGTTGAGTGCCAGTTTCTGCCTAAGATTGACCTCTTTTCCAACACTGA
TCCCTTCGTCGTCATGTACATGCGAGACACCCCGCACGATCAGTGGCGAC
ATATCGGACGCACCGAAGCGCTCACCAACTGCCATTTTCCGCGCTTCGTC
ACCAAGTTTTCGTTCTCTGCACTGCCCGACCAGGACATGGACAAGGAGCT
GTTGGTCAAAGTGTATGGCAAGGGCTCTATGAAGAAGGCCATCTCTCTCG
GTCACGCAATGTGTTCCGTGTGGGATATTGTGGTTGCGCCAGGCCAATGT
AAGGTCATGAAGATGGACTCTATTAATCAGAAGAAGGATACGTGGGTCAT
TCTTTCTGGAGATACCAAACGCCAGCGCGGAGCGGACCGTATCGTCAACA
TCAACGTCAAGTTCGACAAGTCAGCGAAGCCTCGCGCAAAAACTTTCTTC
CTGCTCAACCGCGCGCTGAAGAAGGCAAGGTGGACGCCTGTATTCCGCTC
TGAGAGCCATGCGAGTCCCAATCGAGAGTTCAAGACAGCTGTTACCACGT
TTGCTGACTTGTTCGGTGCTGAAGACAGTAAGCCGATGAGACTTGAGTTC
TATCAGAAGAGAAGTGCCATAGATCCGAAACTGATCGGTTTTGTTCAAGT
GTCTGTGAAGCAACTGATGCAAATGGAAGAGGGCAAAGTTTTGCAATGGT
GGTCTGGGCAGGATGGCACTGCGCCTGGGCTAGTGGTGCTTGCCAAGAAG
GAAATCACAGACGAGAAAATTGACCTCTGGTTCGCCGTCACCAACGAATA
G
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Coding sequence (CDS) from alignment at tig00000925_pilon:119516..120616-

>Ggra2001.t1 ID=Ggra2001.t1|Name=Ggra2001.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00000925_pilon:119516..120616- (Gracilaria gracilis GNS1m male)
ATGTCGGAAATTATGCACAAGTCCTTCTCGGAGCACACGCTCAGCTCCGT
GCCGTCCGTGGATGATGATAATATGTCCGTCGATTCCGACATGACCGCCG
CGTCCAACCTCACAGTCACGCGCACCATCACTCGTCTGGAAGACTTTCCG
AAGCACAAGCCGCCTCCAATCGGTACCGTGCTGGAGGAGGAGACGCCCAA
GCCTGTGCAGCTCATCGTCGAGTTTCTGGGCGGAAGTACCGTAGGCTCTG
AGAGCACGCGCGATTATATTGATGTGCTTTACTCAGAGCCTATGGAAGTG
TCTGTTGAGTGCCAGTTTCTGCCTAAGATTGACCTCTTTTCCAACACTGA
TCCCTTCGTCGTCATGTACATGCGAGACACCCCGCACGATCAGTGGCGAC
ATATCGGACGCACCGAAGCGCTCACCAACTGCCATTTTCCGCGCTTCGTC
ACCAAGTTTTCGTTCTCTGCACTGCCCGACCAGGACATGGACAAGGAGCT
GTTGGTCAAAGTGTATGGCAAGGGCTCTATGAAGAAGGCCATCTCTCTCG
GTCACGCAATGTGTTCCGTGTGGGATATTGTGGTTGCGCCAGGCCAATGT
AAGGTCATGAAGATGGACTCTATTAATCAGAAGAAGGATACGTGGGTCAT
TCTTTCTGGAGATACCAAACGCCAGCGCGGAGCGGACCGTATCGTCAACA
TCAACGTCAAGTTCGACAAGTCAGCGAAGCCTCGCGCAAAAACTTTCTTC
CTGCTCAACCGCGCGCTGAAGAAGGCAAGGTGGACGCCTGTATTCCGCTC
TGAGAGCCATGCGAGTCCCAATCGAGAGTTCAAGACAGCTGTTACCACGT
TTGCTGACTTGTTCGGTGCTGAAGACAGTAAGCCGATGAGACTTGAGTTC
TATCAGAAGAGAAGTGCCATAGATCCGAAACTGATCGGTTTTGTTCAAGT
GTCTGTGAAGCAACTGATGCAAATGGAAGAGGGCAAAGTTTTGCAATGGT
GGTCTGGGCAGGATGGCACTGCGCCTGGGCTAGTGGTGCTTGCCAAGAAG
GAAATCACAGACGAGAAAATTGACCTCTGGTTCGCCGTCACCAACGAATA
G
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