Ggra1852.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1852.t1
Unique NameGgra1852.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:945197..946108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009041912.1
Preferred nameRAM2
PFAMsPPTA
Max annot lvl2759|Eukaryota
KEGG rclassRC00069,RC03004
KEGG koko:K05955
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0004661,GO:0004662,GO:0004663,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005953,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0007323,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0008360,GO:0009414,GO:0009415,GO:0009628,GO:0009787,GO:0009788,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010467,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0018344,GO:0019538,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048509,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051604,GO:0051641,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778
Evalue2.97e-10
EggNOG OGsCOG5536@1|root,KOG0530@2759|Eukaryota
EC2.5.1.58,2.5.1.59
DescriptionCAAX-protein geranylgeranyltransferase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1852Ggra1852Gracilaria gracilis GNS1m malegenetig00000050_pilon 945197..946108 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1852.t1.start1Ggra1852.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 945197..945199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1852.t1.CDS1Ggra1852.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 945197..946108 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1852.t1.exon1Ggra1852.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 945197..946108 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1852.t1.stop1Ggra1852.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 946106..946108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1852.t1Ggra1852.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 945197..946108 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1852.t1 ID=Ggra1852.t1|Name=Ggra1852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MDENTQQPKRGELHPIISAFADVDYVPISPSEILRLEEPASVPHVYALMH
AVIKTSERSKRTHELASAAIEHNGGNPTAWLLRRQSAEALAAQDKSVWAK
ELAFCGSVIIENSKNYQAWEHRRFCAKLCGLQHEREFTDVVLAEDEKNYH
AWAHRAWLVKQGLKDGELHSTEWYISRDLRNNSAWNHRWMVLTHTGAIEE
RGTEEMRFALDVMRKASRNEAVWNYIRALCERGIGTQLALDAVRQVLATD
QRCFPARKMLVYGPLKQGDEEVKKHCKFLADYDWLRSGYWKSIGEDGEED
EEL*
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spliced messenger RNA

>Ggra1852.t1 ID=Ggra1852.t1|Name=Ggra1852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000050_pilon:945197..946108+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGAATACGCAGCAGCCAAAACGTGGGGAGCTCCATCCCATCAT
CTCGGCGTTCGCCGACGTGGATTACGTGCCCATCTCGCCTTCGGAAATCC
TACGACTTGAAGAACCCGCATCCGTTCCTCACGTGTATGCGCTGATGCAC
GCCGTGATAAAAACGTCCGAGAGAAGCAAACGCACGCATGAACTAGCGAG
CGCGGCGATAGAACACAACGGCGGCAATCCAACTGCATGGCTGCTACGGC
GCCAGTCGGCCGAGGCTCTTGCCGCGCAAGACAAGAGCGTGTGGGCAAAG
GAGCTGGCCTTTTGCGGCTCCGTGATCATCGAAAACTCGAAGAACTACCA
GGCATGGGAACATCGACGCTTCTGTGCCAAGCTATGTGGCCTGCAGCACG
AACGCGAGTTTACGGACGTGGTACTGGCCGAAGACGAGAAGAACTATCAC
GCATGGGCACACCGCGCATGGCTGGTGAAACAGGGACTCAAGGACGGGGA
GCTGCACTCCACGGAGTGGTACATCAGCAGAGACCTACGCAACAACTCGG
CGTGGAATCATCGGTGGATGGTGCTCACACACACCGGCGCTATTGAGGAG
CGGGGCACGGAGGAAATGCGGTTCGCTCTGGATGTGATGAGAAAGGCCAG
CAGGAACGAGGCGGTGTGGAACTACATTCGCGCGCTGTGTGAGCGAGGAA
TTGGAACACAGCTGGCGCTGGACGCCGTGCGGCAGGTGCTTGCCACCGAT
CAGAGGTGTTTTCCTGCGCGAAAGATGCTGGTGTACGGGCCGTTGAAACA
GGGCGATGAGGAGGTGAAGAAGCACTGCAAGTTTCTGGCGGACTATGACT
GGCTTCGAAGCGGGTACTGGAAGAGTATTGGCGAGGATGGTGAGGAGGAC
GAGGAGCTTTGA
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protein sequence of Ggra1852.t1

>Ggra1852.t1 ID=Ggra1852.t1|Name=Ggra1852.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MDENTQQPKRGELHPIISAFADVDYVPISPSEILRLEEPASVPHVYALMH
AVIKTSERSKRTHELASAAIEHNGGNPTAWLLRRQSAEALAAQDKSVWAK
ELAFCGSVIIENSKNYQAWEHRRFCAKLCGLQHEREFTDVVLAEDEKNYH
AWAHRAWLVKQGLKDGELHSTEWYISRDLRNNSAWNHRWMVLTHTGAIEE
RGTEEMRFALDVMRKASRNEAVWNYIRALCERGIGTQLALDAVRQVLATD
QRCFPARKMLVYGPLKQGDEEVKKHCKFLADYDWLRSGYWKSIGEDGEED
EEL*
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mRNA from alignment at tig00000050_pilon:945197..946108+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1852.t1 ID=Ggra1852.t1|Name=Ggra1852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000050_pilon:945197..946108+ (Gracilaria gracilis GNS1m male)
ATGGATGAGAATACGCAGCAGCCAAAACGTGGGGAGCTCCATCCCATCAT
CTCGGCGTTCGCCGACGTGGATTACGTGCCCATCTCGCCTTCGGAAATCC
TACGACTTGAAGAACCCGCATCCGTTCCTCACGTGTATGCGCTGATGCAC
GCCGTGATAAAAACGTCCGAGAGAAGCAAACGCACGCATGAACTAGCGAG
CGCGGCGATAGAACACAACGGCGGCAATCCAACTGCATGGCTGCTACGGC
GCCAGTCGGCCGAGGCTCTTGCCGCGCAAGACAAGAGCGTGTGGGCAAAG
GAGCTGGCCTTTTGCGGCTCCGTGATCATCGAAAACTCGAAGAACTACCA
GGCATGGGAACATCGACGCTTCTGTGCCAAGCTATGTGGCCTGCAGCACG
AACGCGAGTTTACGGACGTGGTACTGGCCGAAGACGAGAAGAACTATCAC
GCATGGGCACACCGCGCATGGCTGGTGAAACAGGGACTCAAGGACGGGGA
GCTGCACTCCACGGAGTGGTACATCAGCAGAGACCTACGCAACAACTCGG
CGTGGAATCATCGGTGGATGGTGCTCACACACACCGGCGCTATTGAGGAG
CGGGGCACGGAGGAAATGCGGTTCGCTCTGGATGTGATGAGAAAGGCCAG
CAGGAACGAGGCGGTGTGGAACTACATTCGCGCGCTGTGTGAGCGAGGAA
TTGGAACACAGCTGGCGCTGGACGCCGTGCGGCAGGTGCTTGCCACCGAT
CAGAGGTGTTTTCCTGCGCGAAAGATGCTGGTGTACGGGCCGTTGAAACA
GGGCGATGAGGAGGTGAAGAAGCACTGCAAGTTTCTGGCGGACTATGACT
GGCTTCGAAGCGGGTACTGGAAGAGTATTGGCGAGGATGGTGAGGAGGAC
GAGGAGCTTTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:945197..946108+

>Ggra1852.t1 ID=Ggra1852.t1|Name=Ggra1852.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000050_pilon:945197..946108+ (Gracilaria gracilis GNS1m male)
ATGGATGAGAATACGCAGCAGCCAAAACGTGGGGAGCTCCATCCCATCAT
CTCGGCGTTCGCCGACGTGGATTACGTGCCCATCTCGCCTTCGGAAATCC
TACGACTTGAAGAACCCGCATCCGTTCCTCACGTGTATGCGCTGATGCAC
GCCGTGATAAAAACGTCCGAGAGAAGCAAACGCACGCATGAACTAGCGAG
CGCGGCGATAGAACACAACGGCGGCAATCCAACTGCATGGCTGCTACGGC
GCCAGTCGGCCGAGGCTCTTGCCGCGCAAGACAAGAGCGTGTGGGCAAAG
GAGCTGGCCTTTTGCGGCTCCGTGATCATCGAAAACTCGAAGAACTACCA
GGCATGGGAACATCGACGCTTCTGTGCCAAGCTATGTGGCCTGCAGCACG
AACGCGAGTTTACGGACGTGGTACTGGCCGAAGACGAGAAGAACTATCAC
GCATGGGCACACCGCGCATGGCTGGTGAAACAGGGACTCAAGGACGGGGA
GCTGCACTCCACGGAGTGGTACATCAGCAGAGACCTACGCAACAACTCGG
CGTGGAATCATCGGTGGATGGTGCTCACACACACCGGCGCTATTGAGGAG
CGGGGCACGGAGGAAATGCGGTTCGCTCTGGATGTGATGAGAAAGGCCAG
CAGGAACGAGGCGGTGTGGAACTACATTCGCGCGCTGTGTGAGCGAGGAA
TTGGAACACAGCTGGCGCTGGACGCCGTGCGGCAGGTGCTTGCCACCGAT
CAGAGGTGTTTTCCTGCGCGAAAGATGCTGGTGTACGGGCCGTTGAAACA
GGGCGATGAGGAGGTGAAGAAGCACTGCAAGTTTCTGGCGGACTATGACT
GGCTTCGAAGCGGGTACTGGAAGAGTATTGGCGAGGATGGTGAGGAGGAC
GAGGAGCTTTGA
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