Ggra1852.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1852.t1
Unique NameGgra1852.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Homology
BLAST of Ggra1852.t1 vs. uniprot
Match: A0A2V3IGJ4 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGJ4_9FLOR)

HSP 1 Score: 296 bits (759), Expect = 8.950e-97
Identity = 191/302 (63.25%), Postives = 234/302 (77.48%), Query Frame = 0
Query:    2 DENTQQPKRGELHPIISAFADVDYVPISPSEILRLEEPASVPHVYALMHAVIKTSERSKRTHELASAAIEHNGGNPTAWLLRRQSAEALAAQDKSVWAKELAFCGSVIIENSKNYQAWEHRRFCAKLCGLQHEREFTDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWMVLTHTGAIEERGTEEMRFALDVMRKASRNEAVWNYIRALCERGIGTQLALDAVRQVLATDQRCFPARKMLVYGPLK---QGDEEVKKHCKFLADYDWLRSGYWKSIGEDGEED 300
            D+N+      + HPI S F+D  Y P  PS++LR +EP  +PHVY L+ AV+ +SERS RTH LA+ AIEHN  NPTAWL+RRQSAE LA  DKS+W KE+A+C S+I  ++KNYQAWE+RRFCA   G QHEREF D+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX W+VLT TGA+EERG EEM+FAL  M+ A RNEAVWN+I+AL ERGIG +LAL+A R+ +A D+ C PAR+ +V+  LK   +G+E+VKKHC FLA+ D +R  YW+S+  D +ED
Sbjct:    3 DQNSDAQYSKDQHPIFSEFSDFKYTPTDPSDVLRFDEPPFIPHVYGLLQAVLHSSERSSRTHRLATVAIEHNQSNPTAWLIRRQSAETLAKDDKSIWEKEMAYCASIITNSAKNYQAWEYRRFCATKFGHQHEREFADIVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWVVLTLTGALEERGEEEMQFALSQMKLADRNEAVWNFIQALYERGIGCELALEAAREAIAKDELCLPARRFVVWATLKPGKEGNEDVKKHCAFLAEKDAVRRKYWQSLVGDADED 304          
BLAST of Ggra1852.t1 vs. uniprot
Match: R7QBF6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBF6_CHOCR)

HSP 1 Score: 147 bits (371), Expect = 4.540e-38
Identity = 141/277 (50.90%), Postives = 174/277 (62.82%), Query Frame = 0
Query:   24 DYVPISPSEILRLEEPASVPHVYALMHAVIKTSERSKRTHELASAAIEHNGGNPTAWLLRRQSAEALAAQDKSVWAKELAFCGSVIIENSKNYQAWEHRRFCAKLCGLQHEREFTDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--WMVLTHTGAIE-ERGTEEMRFALDVMRKASRNEAVWNYIRALCERGIGTQLALDAVRQVLATDQRCFPARKMLVYGPLKQGDEEVKKHCKFLAD-YDWLRSGYWKSIGED 296
            +Y P+  S +L +       HV+ L++AV K+ ERSKR  +L S AI     +PTAW+LRR+    LA  + ++WA EL F   +I +N KNYQAWEHRRF A+   L         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  W+V   TG +E  R  +EM FAL+++ KA RNEAVWNYI A+ + G+    A     + L  D  C PAR+ LV         EV+KHC+ LA   D +R  YW+    D
Sbjct:   82 EYSPVEFSPVLTINLSDEFRHVFGLLYAVKKSKERSKRALDLTSRAIILQNSSPTAWMLRREVVATLAENNPALWAIELGFTAKIISKNEKNYQAWEHRRFAAESGNLLQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLV---TGLVEGARNDDEMTFALEIVEKAPRNEAVWNYIHAMGKSGLSIAAAKAKAVECLEVDAGCIPARRFLVLNASSSEASEVRKHCQILASGVDPIRKKYWEMKAAD 355          
BLAST of Ggra1852.t1 vs. uniprot
Match: A0A5D6XIC6 (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIC6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.570e-11
Identity = 124/285 (43.51%), Postives = 154/285 (54.04%), Query Frame = 0
Query:   20 FADVDYVPIS--PSEILRLEEPASVPHVYALMHAVIKTSERSKRTHELASAAIEHNGGNPTAWLLRRQSAEALAAQDKSVWAKELAFCGSVIIENSKNYQAWEHRR-FCAKLCGLQHEREFT-DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWMVLTHTGAIEERGTE-EMRFALDVMRKASRNEAVWNYIRALCERGIGTQLALDAVRQVLATDQR---CFPARKMLVYGPLKQGDEEVKKHCKFLADY-----DWLRSGYWK 291
            +ADV  +P    P  I+ +    S   V  L   V++  E S+RT +L    I+ N  N TAW  RR++ EAL A        ELA+   + I + KNYQ W HRR  CA L     E+ F+     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXW VL HT A+     E E+ +AL     A  NE+ WNYIR L  RG   + A     ++LA  +    C     +LV    K+   +     + L D      D +R  YW+
Sbjct:   10 WADVPRIPQDDGPDPIVTIAYSESFTDVMDLFRGVLRLGEYSERTLDLTLDVIDENPANYTAWAFRRRALEALGAN----LYDELAYTERMAIAHPKNYQIWHHRREVCALLQDGSAEKAFSAKALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWFVLKHTTALSADDRERELEYALAKAAAAVHNESPWNYIRGLV-RGHEARFAGFLKGELLALLEAHPDCVFVAALLVDLYAKEQTSDAIAAARQLTDKLMNETDRVRKAYWR 289          
BLAST of Ggra1852.t1 vs. uniprot
Match: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026578C0 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026578C0)

HSP 1 Score: 69.3 bits (168), Expect = 7.270e-10
Identity = 112/281 (39.86%), Postives = 159/281 (56.58%), Query Frame = 0
Query:   18 SAFADVDYVPISPSE--ILRLEEPASVPHVYALMHAVIKTSERSKRTHELASAAIEHNGGNPTAWLLRRQSAEALAAQDKSVWAKELAFCGSVIIENSKNYQAWEHRRFCAKLCGL---QHEREFTDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWMVLTHTGAIEERGTEEMRFALDVMRKASRNEAVWNYIRALCERGIGTQLA--LDAVRQVLATDQRCFPARKMLVYGPLKQGDEEVK-KHCKFLADYDWLRSGYW 290
            S +ADV  + I   +  ++ +    +    Y  + AV+K+ E S+R  EL +   + N    T WLLRR+    L A  K    +EL F  + I EN KNYQ W HR+   +  G    +        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++VL  TG   E    E+ F LD +R+ + NE+ WNY+R + +     Q A  ++ + +  ++ ++   +  +L+      G +++  K  + L ++D LR+ YW
Sbjct:   14 SDWADVKPLDIETDKDSVINIAYSETFRDCYGYLRAVLKSGELSERVFELTTTCADENPSCYTVWLLRRK----LIAHLKKDLREELDFMVTQIQENQKNYQVWYHRQKMVEWLGDPAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYFVVLNSTGFTSEVMDSEIEFTLDSVREVNYNESSWNYLRGIFKHANDKQKAHIINVLEKEFSSGRKSVFSLSILLDTYEATGQKDLALKAAEQLKEHDLLRANYW 290          
BLAST of Ggra1852.t1 vs. uniprot
Match: T1JXX9 (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1JXX9_TETUR)

HSP 1 Score: 65.1 bits (157), Expect = 2.800e-8
Identity = 111/290 (38.28%), Postives = 156/290 (53.79%), Query Frame = 0
Query:   24 DYVPISP----SEILRLEEPASVPHVYALMHAVIKTSERSKRTHELASAAIEHNGGNPTAWLLRRQSAEALAAQDKSVWAKELAFCGSVIIENSKNYQAWEHRRFCAKLCG-LQHEREFTD-VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWMVLTHTGAIEERGT--EEMRFALDVMRKASRNEAVWNYIRALCERGIGTQLALDAVRQVL-ATDQRCFPARKMLVYGPLKQGDEEVKKHC----------KFLADYDWLRSGYWKSIG 294
            D  P+ P    +++L +         +    A+ K +E S+R  +L    I  N  N T W+ RR+    L A  K++  +EL +   +I+++SKNYQ W+HRR+  +L    Q E++FTD +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   L  T  ++       E+ FA++ + K   NE+ WNY+R +   G+G     +  +     T   CF  R   +   L+  D+++K             K   + D +RS YW  IG
Sbjct:   64 DISPVIPDPYEAKVLGIPYTIKFREAHEYFRAIFKKNELSERALKLTEDCISWNPANSTVWVFRRK---CLLALGKNL-VEELNYLNDIIVDHSKNYQVWQHRRWIIELLADPQTEKDFTDRLFKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKRTKQLQNNEIIENEVAFAIENILKVPENESPWNYLRGVLA-GVGLNKFPEKTKVFENVTSVHCFSFRIDAMEELLR--DQDMKDQMVVQKILELVEKLSTEMDVIRSQYWLFIG 346          
The following BLAST results are available for this feature:
BLAST of Ggra1852.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IGJ48.950e-9763.25Protein farnesyltransferase/geranylgeranyltransfer... [more]
R7QBF64.540e-3850.90Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5D6XIC64.570e-1143.51Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026578C07.270e-1039.86protein farnesyltransferase/geranylgeranyltransfer... [more]
T1JXX92.800e-838.28Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.40.120Protein prenylyltransferasecoord: 17..302
e-value: 5.5E-57
score: 195.2
NoneNo IPR availablePANTHERPTHR11129PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNITcoord: 20..292
NoneNo IPR availablePANTHERPTHR11129:SF1PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE-1 SUBUNIT ALPHAcoord: 20..292
NoneNo IPR availableSUPERFAMILY48439Protein prenylyltransferasecoord: 44..293
IPR002088Protein prenyltransferase, alpha subunitPFAMPF01239PPTAcoord: 98..126
e-value: 5.9E-8
score: 32.1
coord: 131..161
e-value: 1.6E-7
score: 30.7
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 132..164
score: 10.381015
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 97..131
score: 14.948286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:945197..946108 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1852.t1Ggra1852.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 945197..946108 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1852.t1 ID=Ggra1852.t1|Name=Ggra1852.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MDENTQQPKRGELHPIISAFADVDYVPISPSEILRLEEPASVPHVYALMH
AVIKTSERSKRTHELASAAIEHNGGNPTAWLLRRQSAEALAAQDKSVWAK
ELAFCGSVIIENSKNYQAWEHRRFCAKLCGLQHEREFTDVVLAEDEKNYH
AWAHRAWLVKQGLKDGELHSTEWYISRDLRNNSAWNHRWMVLTHTGAIEE
RGTEEMRFALDVMRKASRNEAVWNYIRALCERGIGTQLALDAVRQVLATD
QRCFPARKMLVYGPLKQGDEEVKKHCKFLADYDWLRSGYWKSIGEDGEED
EEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002088Prenyl_trans_a