Ggra1812.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1812.t1
Unique NameGgra1812.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:702917..704158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1812Ggra1812Gracilaria gracilis GNS1m malegenetig00000050_pilon 702917..704158 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1812.t1.stop1Ggra1812.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 702917..702919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1812.t1.CDS1Ggra1812.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 702917..704158 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1812.t1.exon1Ggra1812.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 702917..704158 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1812.t1.start1Ggra1812.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 704156..704158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1812.t1Ggra1812.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 702917..704158 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1812.t1 ID=Ggra1812.t1|Name=Ggra1812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MADFEIERRCSFEKRPGIVQLSATNLVWTPDSAADGREQRVPFTAISQFQ
VSKEGSAKKAMIRLTCSDRSNKITLDFGASFTDRDAVRDVLNRLQSAPAF
APPVVQQPPKKPLSEKQKLWRTSLLQRKEVRQMHQRLVLTRAVTEDTFWK
GMKFRYTPKGELKNPNEPLEHADELNDAGVPSDAFTATNSCDDLKWDTIP
SPAQRHQIFLAHPALKRTFLHKKVSFDDENMWALFSASSMAPRSARLKSK
SDSVRAGAADAFFAPFQAKEAERAIQDREESVHNLHATLAIDRFDDHRTE
HIHDPHPEKRVRVSDALRLMRMVNVHGGMIVGDGWKDSGERPLEDLVDEP
EKSFAPLAVRENAPKLETAAIDSNVAVAFSDAMRLWRADVARFSEPIATS
GDVLRKLIESMRP*
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spliced messenger RNA

>Ggra1812.t1 ID=Ggra1812.t1|Name=Ggra1812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000050_pilon:702917..704158- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGATTTTGAGATCGAGCGACGCTGCTCGTTCGAGAAGCGCCCTGG
CATTGTACAGCTCTCTGCCACCAACCTTGTTTGGACTCCAGACTCTGCCG
CAGATGGTCGCGAGCAGCGCGTGCCGTTTACGGCTATATCTCAGTTTCAG
GTCTCCAAGGAAGGATCTGCCAAGAAGGCTATGATTCGCCTCACCTGTTC
TGATAGATCCAACAAAATCACGCTTGACTTTGGTGCCAGCTTCACTGATA
GGGATGCCGTGCGCGACGTTTTAAACCGCTTACAATCTGCGCCCGCTTTT
GCGCCGCCTGTTGTGCAGCAGCCTCCCAAGAAACCGCTTTCTGAAAAGCA
AAAGCTATGGCGCACTTCCTTGCTGCAGAGGAAGGAAGTGCGTCAGATGC
ACCAACGCCTCGTTCTTACGCGCGCTGTCACCGAGGACACATTTTGGAAG
GGTATGAAATTTCGATACACGCCCAAGGGCGAGTTGAAGAATCCGAATGA
ACCTCTTGAACATGCTGATGAGCTCAATGATGCTGGCGTTCCTTCAGACG
CCTTCACTGCCACCAATTCTTGTGATGATCTTAAATGGGATACAATTCCA
TCACCAGCACAACGACATCAGATTTTCCTCGCTCATCCTGCTCTGAAGCG
AACTTTCTTACACAAGAAGGTTAGCTTTGACGATGAGAACATGTGGGCTT
TGTTCTCTGCATCCAGTATGGCTCCTCGTAGTGCCCGCCTCAAATCTAAG
AGCGATTCTGTCAGGGCCGGCGCCGCCGACGCGTTTTTCGCTCCTTTCCA
GGCCAAAGAAGCAGAAAGGGCTATACAAGATCGCGAGGAAAGCGTACACA
ATCTGCACGCCACTTTGGCCATAGATCGATTTGATGATCATCGAACGGAG
CACATCCATGACCCACATCCAGAGAAGAGAGTGCGTGTGTCAGACGCCTT
GCGCTTAATGCGCATGGTTAATGTCCATGGTGGCATGATTGTCGGCGACG
GTTGGAAGGACAGTGGAGAACGTCCACTTGAAGACTTGGTTGATGAACCT
GAGAAATCATTCGCTCCTCTCGCTGTTAGAGAGAATGCCCCAAAGCTTGA
GACTGCTGCTATCGATTCAAACGTAGCTGTGGCTTTTTCAGATGCCATGC
GACTGTGGCGAGCAGATGTGGCCCGCTTTTCTGAACCTATTGCCACAAGT
GGAGACGTGTTGCGGAAATTGATCGAATCCATGAGACCGTGA
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protein sequence of Ggra1812.t1

>Ggra1812.t1 ID=Ggra1812.t1|Name=Ggra1812.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MADFEIERRCSFEKRPGIVQLSATNLVWTPDSAADGREQRVPFTAISQFQ
VSKEGSAKKAMIRLTCSDRSNKITLDFGASFTDRDAVRDVLNRLQSAPAF
APPVVQQPPKKPLSEKQKLWRTSLLQRKEVRQMHQRLVLTRAVTEDTFWK
GMKFRYTPKGELKNPNEPLEHADELNDAGVPSDAFTATNSCDDLKWDTIP
SPAQRHQIFLAHPALKRTFLHKKVSFDDENMWALFSASSMAPRSARLKSK
SDSVRAGAADAFFAPFQAKEAERAIQDREESVHNLHATLAIDRFDDHRTE
HIHDPHPEKRVRVSDALRLMRMVNVHGGMIVGDGWKDSGERPLEDLVDEP
EKSFAPLAVRENAPKLETAAIDSNVAVAFSDAMRLWRADVARFSEPIATS
GDVLRKLIESMRP*
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mRNA from alignment at tig00000050_pilon:702917..704158-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1812.t1 ID=Ggra1812.t1|Name=Ggra1812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000050_pilon:702917..704158- (Gracilaria gracilis GNS1m male)
ATGGCAGATTTTGAGATCGAGCGACGCTGCTCGTTCGAGAAGCGCCCTGG
CATTGTACAGCTCTCTGCCACCAACCTTGTTTGGACTCCAGACTCTGCCG
CAGATGGTCGCGAGCAGCGCGTGCCGTTTACGGCTATATCTCAGTTTCAG
GTCTCCAAGGAAGGATCTGCCAAGAAGGCTATGATTCGCCTCACCTGTTC
TGATAGATCCAACAAAATCACGCTTGACTTTGGTGCCAGCTTCACTGATA
GGGATGCCGTGCGCGACGTTTTAAACCGCTTACAATCTGCGCCCGCTTTT
GCGCCGCCTGTTGTGCAGCAGCCTCCCAAGAAACCGCTTTCTGAAAAGCA
AAAGCTATGGCGCACTTCCTTGCTGCAGAGGAAGGAAGTGCGTCAGATGC
ACCAACGCCTCGTTCTTACGCGCGCTGTCACCGAGGACACATTTTGGAAG
GGTATGAAATTTCGATACACGCCCAAGGGCGAGTTGAAGAATCCGAATGA
ACCTCTTGAACATGCTGATGAGCTCAATGATGCTGGCGTTCCTTCAGACG
CCTTCACTGCCACCAATTCTTGTGATGATCTTAAATGGGATACAATTCCA
TCACCAGCACAACGACATCAGATTTTCCTCGCTCATCCTGCTCTGAAGCG
AACTTTCTTACACAAGAAGGTTAGCTTTGACGATGAGAACATGTGGGCTT
TGTTCTCTGCATCCAGTATGGCTCCTCGTAGTGCCCGCCTCAAATCTAAG
AGCGATTCTGTCAGGGCCGGCGCCGCCGACGCGTTTTTCGCTCCTTTCCA
GGCCAAAGAAGCAGAAAGGGCTATACAAGATCGCGAGGAAAGCGTACACA
ATCTGCACGCCACTTTGGCCATAGATCGATTTGATGATCATCGAACGGAG
CACATCCATGACCCACATCCAGAGAAGAGAGTGCGTGTGTCAGACGCCTT
GCGCTTAATGCGCATGGTTAATGTCCATGGTGGCATGATTGTCGGCGACG
GTTGGAAGGACAGTGGAGAACGTCCACTTGAAGACTTGGTTGATGAACCT
GAGAAATCATTCGCTCCTCTCGCTGTTAGAGAGAATGCCCCAAAGCTTGA
GACTGCTGCTATCGATTCAAACGTAGCTGTGGCTTTTTCAGATGCCATGC
GACTGTGGCGAGCAGATGTGGCCCGCTTTTCTGAACCTATTGCCACAAGT
GGAGACGTGTTGCGGAAATTGATCGAATCCATGAGACCGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:702917..704158-

>Ggra1812.t1 ID=Ggra1812.t1|Name=Ggra1812.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000050_pilon:702917..704158- (Gracilaria gracilis GNS1m male)
ATGGCAGATTTTGAGATCGAGCGACGCTGCTCGTTCGAGAAGCGCCCTGG
CATTGTACAGCTCTCTGCCACCAACCTTGTTTGGACTCCAGACTCTGCCG
CAGATGGTCGCGAGCAGCGCGTGCCGTTTACGGCTATATCTCAGTTTCAG
GTCTCCAAGGAAGGATCTGCCAAGAAGGCTATGATTCGCCTCACCTGTTC
TGATAGATCCAACAAAATCACGCTTGACTTTGGTGCCAGCTTCACTGATA
GGGATGCCGTGCGCGACGTTTTAAACCGCTTACAATCTGCGCCCGCTTTT
GCGCCGCCTGTTGTGCAGCAGCCTCCCAAGAAACCGCTTTCTGAAAAGCA
AAAGCTATGGCGCACTTCCTTGCTGCAGAGGAAGGAAGTGCGTCAGATGC
ACCAACGCCTCGTTCTTACGCGCGCTGTCACCGAGGACACATTTTGGAAG
GGTATGAAATTTCGATACACGCCCAAGGGCGAGTTGAAGAATCCGAATGA
ACCTCTTGAACATGCTGATGAGCTCAATGATGCTGGCGTTCCTTCAGACG
CCTTCACTGCCACCAATTCTTGTGATGATCTTAAATGGGATACAATTCCA
TCACCAGCACAACGACATCAGATTTTCCTCGCTCATCCTGCTCTGAAGCG
AACTTTCTTACACAAGAAGGTTAGCTTTGACGATGAGAACATGTGGGCTT
TGTTCTCTGCATCCAGTATGGCTCCTCGTAGTGCCCGCCTCAAATCTAAG
AGCGATTCTGTCAGGGCCGGCGCCGCCGACGCGTTTTTCGCTCCTTTCCA
GGCCAAAGAAGCAGAAAGGGCTATACAAGATCGCGAGGAAAGCGTACACA
ATCTGCACGCCACTTTGGCCATAGATCGATTTGATGATCATCGAACGGAG
CACATCCATGACCCACATCCAGAGAAGAGAGTGCGTGTGTCAGACGCCTT
GCGCTTAATGCGCATGGTTAATGTCCATGGTGGCATGATTGTCGGCGACG
GTTGGAAGGACAGTGGAGAACGTCCACTTGAAGACTTGGTTGATGAACCT
GAGAAATCATTCGCTCCTCTCGCTGTTAGAGAGAATGCCCCAAAGCTTGA
GACTGCTGCTATCGATTCAAACGTAGCTGTGGCTTTTTCAGATGCCATGC
GACTGTGGCGAGCAGATGTGGCCCGCTTTTCTGAACCTATTGCCACAAGT
GGAGACGTGTTGCGGAAATTGATCGAATCCATGAGACCGTGA
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