Ggra1812.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1812.t1
Unique NameGgra1812.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Homology
BLAST of Ggra1812.t1 vs. uniprot
Match: A0A2V3IWI1 (PH_TFIIH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWI1_9FLOR)

HSP 1 Score: 631 bits (1627), Expect = 2.690e-225
Identity = 311/413 (75.30%), Postives = 360/413 (87.17%), Query Frame = 0
Query:    1 MADFEIERRCSFEKRPGIVQLSATNLVWTPDSAADGREQRVPFTAISQFQVSKEGSAKKAMIRLTCSDRSNKITLDFGASFTDRDAVRDVLNRLQSAPAFAPPVVQQPPKKPLSEKQKLWRTSLLQRKEVRQMHQRLVLTRAVTEDTFWKGMKFRYTPKGELKNPNEPLEHADELNDAGVPSDAFTATNSCDDLKWDTIPSPAQRHQIFLAHPALKRTFLHKKVSFDDENMWALFSASSMAPRSARLKSKSDSVRAGAADAFFAPFQAKEAERAIQDREESVHNLHATLAIDRFDDHRTEHIHDPHPEKRVRVSDALRLMRMVNVHGGMIVGDGWKDSGERPLEDLVDEPEKSFAPLAVRENAPKLETAAIDSNVAVAFSDAMRLWRADVARFSEPIATSGDVLRKLIESMRP 413
            M++FEIERRCSFEKRPGIV LSAT+LVWTP+SAADGRE RVPFTAISQFQVSKEGSAKKAMIRLTCSDR NKITLDF  SFTDRDAVRD+LNRLQSAPA APP +  PP +PL+ +Q+LWRT+LL+RK+VRQMHQRLVL+RAV+ED FWKGMKFRYTPK E +NP EPLEHAD L++ GVPSDAFT + SCDDLKWDT+P+PAQRH IFLA PA+KR FL +  +FDD ++WALFSASSMAPRSAR++SK D+VRAG ADAFFAP+QA+EAERA ++RE+SV NLH+ +AI+RFDDHRTEH+ DPHP KR RVSDALRLMRMVN HG MIVG+GWKD+ ERPLEDLVD+P + F  LAV+E+A K E  AID  +A+AFSDAM  W ADVARFSEPI TSG +L KL++SMRP
Sbjct:    1 MSEFEIERRCSFEKRPGIVHLSATHLVWTPNSAADGRELRVPFTAISQFQVSKEGSAKKAMIRLTCSDRPNKITLDFATSFTDRDAVRDLLNRLQSAPAPAPPPIHAPPAQPLTARQRLWRTALLKRKDVRQMHQRLVLSRAVSEDVFWKGMKFRYTPKAEPRNPTEPLEHADLLHETGVPSDAFTPSPSCDDLKWDTVPTPAQRHHIFLAFPAVKRAFLQRNATFDDHHLWALFSASSMAPRSARVRSKRDTVRAGEADAFFAPYQAREAERAQKEREQSVRNLHSDIAINRFDDHRTEHVQDPHPPKRARVSDALRLMRMVNTHGSMIVGEGWKDTLERPLEDLVDQPPRPFTKLAVQESATKREAHAIDHGIALAFSDAMTHWSADVARFSEPIHTSGQILHKLVKSMRP 413          
BLAST of Ggra1812.t1 vs. uniprot
Match: A0A7S1TGP5 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGP5_9RHOD)

HSP 1 Score: 80.9 bits (198), Expect = 6.980e-13
Identity = 103/406 (25.37%), Postives = 181/406 (44.58%), Query Frame = 0
Query:   12 FEKRPGIVQLSATNLVWTPDSAADGREQ-RVPFTAISQFQVSKEGSAKKAMIRLTCSDRSNKITLDFGAS-----FTDRDAVRDVLNRLQ----SAPAFAPP------VVQQPPKKP-----------LSEKQKLWRTSLLQRK-EVRQMHQRLVLTRAVTEDTFWKGMKFRYTPKGELKNPNEPLEHADELNDAGVP---SDAFTATNSCDDLKWDTIPSPAQRHQIFLAHPALKRTFLHKKVS-FDDENMWALFSASSMAPRSARLKSKSDSVRAGAADAFFAPFQAKEAERAIQDREESVHNLHATLAIDRFDDHRTEHIHDPHPE------KRVRVSDALRLMRMVNVHGGMIVGDGWKDSG----------------ERPLEDLVDEPEKSFAPLAVRENA 363
            F+K  G + +    + W   +    RE  +V ++ I+  + SKEG  K A I+L        +  DF  +     F  R+ +++ LNR +    S P   P       V+ +   +P           +S+++ L R  +L +  E+R++H+ LV  R +++D F+K +KFR   + + +N    L+ A +L + G+P   SD   A     + K   I +PA  HQIFLAHPA+ R +     S  +    +  F  SS+  R  RL        A  AD  F+ ++ ++A+   ++  E V  +  ++ + + D H   H+   H E      +  + +  L L R +N HG +++  G K SG                   LEDL+  P+    PL +++++
Sbjct:   13 FDKTNGEIVVGKDAMTWKAIAPQASREGVQVEYSEIATQKASKEGG-KMAAIKLDLQS-GGSLMFDFRTANGLPDFETRNRLKNFLNRAKDQRLSDPTPDPALNRTQEVLDRASSRPRVEERSIRVNEISQRELLQRAEILMKNAEIRKLHEFLVGKRLISDDEFFKAVKFRLKRESQDENA---LDDAIQL-ERGLPTSMSDPLKAAEESVERK-KFILTPAAIHQIFLAHPAVHRAYRDLVPSKMNQAVFFQKFLESSLYNRD-RL-----GAAASQADELFSKYEVEDADAYRREIGERVGMIEVSINLTKQDPHEQIHLKGRHAEDSDVAIQSRKNAPFLPLARYINRHGTLVIDAGGKSSGGGESHAVHTPWREETHREVLEDLLPAPQLPTIPLEIQQSS 405          
The following BLAST results are available for this feature:
BLAST of Ggra1812.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IWI12.690e-22575.30PH_TFIIH domain-containing protein n=1 Tax=Gracila... [more]
A0A7S1TGP56.980e-1325.37Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 268..288
NoneNo IPR availablePANTHERPTHR12856:SF0GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1coord: 9..348
NoneNo IPR availableCDDcd13229PH_TFIIHcoord: 10..97
e-value: 2.83565E-10
score: 54.9701
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 7..93
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 11..91
e-value: 5.1E-11
score: 42.8
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 5..97
e-value: 4.5E-7
score: 31.7
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 9..348

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:702917..704158 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1812.t1Ggra1812.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 702917..704158 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1812.t1 ID=Ggra1812.t1|Name=Ggra1812.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MADFEIERRCSFEKRPGIVQLSATNLVWTPDSAADGREQRVPFTAISQFQ
VSKEGSAKKAMIRLTCSDRSNKITLDFGASFTDRDAVRDVLNRLQSAPAF
APPVVQQPPKKPLSEKQKLWRTSLLQRKEVRQMHQRLVLTRAVTEDTFWK
GMKFRYTPKGELKNPNEPLEHADELNDAGVPSDAFTATNSCDDLKWDTIP
SPAQRHQIFLAHPALKRTFLHKKVSFDDENMWALFSASSMAPRSARLKSK
SDSVRAGAADAFFAPFQAKEAERAIQDREESVHNLHATLAIDRFDDHRTE
HIHDPHPEKRVRVSDALRLMRMVNVHGGMIVGDGWKDSGERPLEDLVDEP
EKSFAPLAVRENAPKLETAAIDSNVAVAFSDAMRLWRADVARFSEPIATS
GDVLRKLIESMRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013876TFIIH_BTF_p62_N
IPR011993PH-like_dom_sf
IPR027079Tfb1/GTF2H1