Ggra1651.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1651.t1
Unique Name	Ggra1651.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	647

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:271075..273015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4558.Sb02g022810.1
PFAMs	Myb_DNA-bind_6
Max annot lvl	35493\|Streptophyta
Evalue	0.000135
EggNOG OGs	2CMEQ@1\|root,2QQ59@2759\|Eukaryota,37KGX@33090\|Viridiplantae,3G9D6@35493\|Streptophyta,3KS8G@4447\|Liliopsida,3IFAI@38820\|Poales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1651	Ggra1651	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 271075..273015 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1651.t1.start1	Ggra1651.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 271075..271077 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1651.t1.CDS1	Ggra1651.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 271075..273015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1651.t1.exon1	Ggra1651.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 271075..273015 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1651.t1.stop1	Ggra1651.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 273013..273015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1651.t1	Ggra1651.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 271075..273015 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:271075..273015+
coding sequence from alignment at tig00000050_pilon:271075..273015+

mRNA sequence

>Ggra1651.t1 ID=Ggra1651.t1|Name=Ggra1651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=647bp
MTAQPRPHRRGSKRRREQPDALVPSEFFARDELDSDDSAPKEPHFEVDDL
DSTDDEQTEAPQDALSSQQPLLGLTDAVFASDDDDDDPDFELASAQPLPS
PPSSPAADPDAENLPFTLAHFASEDEEDDPDFDIHFPLDNAHPSLQAQDT
LQSSEGSPSSPHHDMAYAQFLQALNFTTPTEPQAFPDPFSQLLDDDDEFD
YMREAANVRDDPLEFREDLPVSRREVAQLLSERDIALRSQKRQRTRRAAS
AAAASGIPPLFPPNLTPVPSTSRPVPSIAPVAPVTSVPPATPTAHIAPVA
PPTTVAPATPVTAPKAATASHMQQQALLPSAVASFSPVCLSQFQHQLKAF
VQILTHVHANSAKSVRMSSDEQQDAVAKVVYDKSEIMLKRVLENRNTSVA
YHAMLETHIMHIARFSDGLSFRQFEQCFAKQNRRKSVYGIEGLEDIEAFL
NDCQTIAIDQMPGRALERVEKISQPHLKQALMTRRRQFTLSGAREGWYTW
TAEDDRLLALTIAKYGREVAEYSKDLLPHRMEEDCQARVRHLCSRRCTDN
AVKRQMMLISAPLNQQEAILVQHGLRVFGGRVEDEEVWKRIQRELLPGRQ
WSLLQKLWMWREARKKTKARYRAKTSQKKKAMKNASKRDSNTVADG*

spliced messenger RNA

>Ggra1651.t1 ID=Ggra1651.t1|Name=Ggra1651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1941bp|location=Sequence derived from alignment at tig00000050_pilon:271075..273015+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCGCAGCCGCGCCCTCACCGTCGCGGCTCCAAACGCCGTCGCGA
GCAACCCGACGCCCTAGTTCCCTCCGAGTTTTTCGCCCGCGACGAACTTG
ACTCAGACGACTCCGCTCCCAAGGAGCCTCATTTTGAAGTAGATGACCTT
GATTCCACCGACGATGAACAAACCGAAGCGCCGCAAGATGCTCTTTCTTC
TCAACAACCGCTTCTGGGATTGACTGACGCTGTTTTCGCTTCTGATGACG
ATGATGATGACCCTGACTTTGAGCTTGCTTCTGCTCAACCATTGCCTTCA
CCACCTTCCTCCCCTGCTGCCGACCCTGATGCGGAGAATCTTCCGTTCAC
ACTAGCTCATTTCGCCTCAGAAGATGAAGAGGATGATCCAGACTTTGACA
TACATTTCCCACTTGACAACGCACACCCATCCCTTCAAGCGCAAGACACT
CTCCAATCAAGCGAAGGTTCTCCATCAAGTCCTCACCATGACATGGCCTA
TGCACAATTCCTACAAGCTCTTAACTTCACAACTCCAACTGAGCCACAAG
CTTTTCCGGATCCTTTTAGCCAGCTTCTCGACGACGACGATGAGTTTGAT
TACATGCGCGAAGCTGCAAATGTACGGGATGATCCCTTAGAGTTCCGCGA
AGACTTACCGGTCAGTCGAAGGGAGGTAGCTCAGCTTTTGTCAGAACGTG
ATATCGCTCTGCGCAGTCAGAAAAGACAACGGACAAGACGAGCGGCCTCG
GCAGCAGCGGCTTCAGGAATCCCCCCACTATTTCCCCCTAACCTCACCCC
GGTGCCGAGCACTTCTAGGCCAGTTCCATCCATTGCACCTGTGGCTCCCG
TCACCTCTGTTCCTCCTGCTACTCCTACAGCTCATATCGCCCCTGTTGCA
CCTCCCACTACTGTTGCCCCTGCCACCCCTGTGACGGCACCAAAGGCAGC
AACTGCAAGTCACATGCAGCAGCAAGCTTTGCTTCCAAGCGCGGTTGCAT
CGTTCTCGCCAGTTTGTTTATCGCAGTTTCAACATCAGCTAAAAGCGTTT
GTACAGATTTTGACTCATGTGCATGCGAATTCTGCGAAAAGTGTGCGCAT
GAGCTCTGACGAACAACAAGATGCTGTTGCTAAAGTTGTGTATGACAAGT
CCGAGATCATGTTGAAACGAGTCTTAGAGAATAGAAACACATCTGTAGCA
TATCATGCTATGCTGGAAACTCACATCATGCATATAGCCCGTTTTTCGGA
TGGGCTTTCGTTCCGTCAGTTTGAGCAATGCTTTGCAAAACAGAATCGTA
GAAAGTCTGTGTATGGAATAGAAGGCCTCGAAGACATTGAGGCGTTTCTA
AATGATTGTCAGACGATAGCAATTGATCAAATGCCTGGCCGAGCGTTGGA
GCGAGTGGAGAAGATTTCGCAACCTCATCTCAAGCAGGCTCTTATGACGA
GAAGACGTCAGTTTACTTTGTCTGGGGCCCGCGAAGGCTGGTATACGTGG
ACTGCTGAAGATGACAGACTTCTCGCTCTGACAATCGCCAAGTACGGCAG
GGAGGTGGCAGAATATTCGAAAGACCTACTGCCTCATAGGATGGAGGAAG
ACTGTCAGGCGCGAGTGCGGCATCTGTGTTCTCGGCGATGCACGGACAAT
GCTGTGAAGAGACAAATGATGCTTATTAGTGCTCCTCTTAACCAACAAGA
GGCCATACTTGTACAACACGGGCTGCGTGTGTTTGGGGGGCGTGTCGAAG
ATGAAGAGGTGTGGAAACGAATTCAAAGAGAACTACTTCCTGGAAGGCAG
TGGTCCTTGTTACAGAAACTATGGATGTGGAGGGAGGCAAGGAAGAAGAC
GAAGGCGAGGTATAGGGCGAAAACCAGTCAGAAGAAGAAGGCAATGAAGA
ACGCGTCAAAGAGAGATTCTAACACGGTGGCTGATGGATGA

protein sequence of Ggra1651.t1

>Ggra1651.t1 ID=Ggra1651.t1|Name=Ggra1651.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=647bp
MTAQPRPHRRGSKRRREQPDALVPSEFFARDELDSDDSAPKEPHFEVDDL
DSTDDEQTEAPQDALSSQQPLLGLTDAVFASDDDDDDPDFELASAQPLPS
PPSSPAADPDAENLPFTLAHFASEDEEDDPDFDIHFPLDNAHPSLQAQDT
LQSSEGSPSSPHHDMAYAQFLQALNFTTPTEPQAFPDPFSQLLDDDDEFD
YMREAANVRDDPLEFREDLPVSRREVAQLLSERDIALRSQKRQRTRRAAS
AAAASGIPPLFPPNLTPVPSTSRPVPSIAPVAPVTSVPPATPTAHIAPVA
PPTTVAPATPVTAPKAATASHMQQQALLPSAVASFSPVCLSQFQHQLKAF
VQILTHVHANSAKSVRMSSDEQQDAVAKVVYDKSEIMLKRVLENRNTSVA
YHAMLETHIMHIARFSDGLSFRQFEQCFAKQNRRKSVYGIEGLEDIEAFL
NDCQTIAIDQMPGRALERVEKISQPHLKQALMTRRRQFTLSGAREGWYTW
TAEDDRLLALTIAKYGREVAEYSKDLLPHRMEEDCQARVRHLCSRRCTDN
AVKRQMMLISAPLNQQEAILVQHGLRVFGGRVEDEEVWKRIQRELLPGRQ
WSLLQKLWMWREARKKTKARYRAKTSQKKKAMKNASKRDSNTVADG*

mRNA from alignment at tig00000050_pilon:271075..273015+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1651.t1 ID=Ggra1651.t1|Name=Ggra1651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1941bp|location=Sequence derived from alignment at tig00000050_pilon:271075..273015+ (Gracilaria gracilis GNS1m male)
ATGACAGCGCAGCCGCGCCCTCACCGTCGCGGCTCCAAACGCCGTCGCGA
GCAACCCGACGCCCTAGTTCCCTCCGAGTTTTTCGCCCGCGACGAACTTG
ACTCAGACGACTCCGCTCCCAAGGAGCCTCATTTTGAAGTAGATGACCTT
GATTCCACCGACGATGAACAAACCGAAGCGCCGCAAGATGCTCTTTCTTC
TCAACAACCGCTTCTGGGATTGACTGACGCTGTTTTCGCTTCTGATGACG
ATGATGATGACCCTGACTTTGAGCTTGCTTCTGCTCAACCATTGCCTTCA
CCACCTTCCTCCCCTGCTGCCGACCCTGATGCGGAGAATCTTCCGTTCAC
ACTAGCTCATTTCGCCTCAGAAGATGAAGAGGATGATCCAGACTTTGACA
TACATTTCCCACTTGACAACGCACACCCATCCCTTCAAGCGCAAGACACT
CTCCAATCAAGCGAAGGTTCTCCATCAAGTCCTCACCATGACATGGCCTA
TGCACAATTCCTACAAGCTCTTAACTTCACAACTCCAACTGAGCCACAAG
CTTTTCCGGATCCTTTTAGCCAGCTTCTCGACGACGACGATGAGTTTGAT
TACATGCGCGAAGCTGCAAATGTACGGGATGATCCCTTAGAGTTCCGCGA
AGACTTACCGGTCAGTCGAAGGGAGGTAGCTCAGCTTTTGTCAGAACGTG
ATATCGCTCTGCGCAGTCAGAAAAGACAACGGACAAGACGAGCGGCCTCG
GCAGCAGCGGCTTCAGGAATCCCCCCACTATTTCCCCCTAACCTCACCCC
GGTGCCGAGCACTTCTAGGCCAGTTCCATCCATTGCACCTGTGGCTCCCG
TCACCTCTGTTCCTCCTGCTACTCCTACAGCTCATATCGCCCCTGTTGCA
CCTCCCACTACTGTTGCCCCTGCCACCCCTGTGACGGCACCAAAGGCAGC
AACTGCAAGTCACATGCAGCAGCAAGCTTTGCTTCCAAGCGCGGTTGCAT
CGTTCTCGCCAGTTTGTTTATCGCAGTTTCAACATCAGCTAAAAGCGTTT
GTACAGATTTTGACTCATGTGCATGCGAATTCTGCGAAAAGTGTGCGCAT
GAGCTCTGACGAACAACAAGATGCTGTTGCTAAAGTTGTGTATGACAAGT
CCGAGATCATGTTGAAACGAGTCTTAGAGAATAGAAACACATCTGTAGCA
TATCATGCTATGCTGGAAACTCACATCATGCATATAGCCCGTTTTTCGGA
TGGGCTTTCGTTCCGTCAGTTTGAGCAATGCTTTGCAAAACAGAATCGTA
GAAAGTCTGTGTATGGAATAGAAGGCCTCGAAGACATTGAGGCGTTTCTA
AATGATTGTCAGACGATAGCAATTGATCAAATGCCTGGCCGAGCGTTGGA
GCGAGTGGAGAAGATTTCGCAACCTCATCTCAAGCAGGCTCTTATGACGA
GAAGACGTCAGTTTACTTTGTCTGGGGCCCGCGAAGGCTGGTATACGTGG
ACTGCTGAAGATGACAGACTTCTCGCTCTGACAATCGCCAAGTACGGCAG
GGAGGTGGCAGAATATTCGAAAGACCTACTGCCTCATAGGATGGAGGAAG
ACTGTCAGGCGCGAGTGCGGCATCTGTGTTCTCGGCGATGCACGGACAAT
GCTGTGAAGAGACAAATGATGCTTATTAGTGCTCCTCTTAACCAACAAGA
GGCCATACTTGTACAACACGGGCTGCGTGTGTTTGGGGGGCGTGTCGAAG
ATGAAGAGGTGTGGAAACGAATTCAAAGAGAACTACTTCCTGGAAGGCAG
TGGTCCTTGTTACAGAAACTATGGATGTGGAGGGAGGCAAGGAAGAAGAC
GAAGGCGAGGTATAGGGCGAAAACCAGTCAGAAGAAGAAGGCAATGAAGA
ACGCGTCAAAGAGAGATTCTAACACGGTGGCTGATGGATGA

Coding sequence (CDS) from alignment at tig00000050_pilon:271075..273015+

>Ggra1651.t1 ID=Ggra1651.t1|Name=Ggra1651.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1941bp|location=Sequence derived from alignment at tig00000050_pilon:271075..273015+ (Gracilaria gracilis GNS1m male)
ATGACAGCGCAGCCGCGCCCTCACCGTCGCGGCTCCAAACGCCGTCGCGA
GCAACCCGACGCCCTAGTTCCCTCCGAGTTTTTCGCCCGCGACGAACTTG
ACTCAGACGACTCCGCTCCCAAGGAGCCTCATTTTGAAGTAGATGACCTT
GATTCCACCGACGATGAACAAACCGAAGCGCCGCAAGATGCTCTTTCTTC
TCAACAACCGCTTCTGGGATTGACTGACGCTGTTTTCGCTTCTGATGACG
ATGATGATGACCCTGACTTTGAGCTTGCTTCTGCTCAACCATTGCCTTCA
CCACCTTCCTCCCCTGCTGCCGACCCTGATGCGGAGAATCTTCCGTTCAC
ACTAGCTCATTTCGCCTCAGAAGATGAAGAGGATGATCCAGACTTTGACA
TACATTTCCCACTTGACAACGCACACCCATCCCTTCAAGCGCAAGACACT
CTCCAATCAAGCGAAGGTTCTCCATCAAGTCCTCACCATGACATGGCCTA
TGCACAATTCCTACAAGCTCTTAACTTCACAACTCCAACTGAGCCACAAG
CTTTTCCGGATCCTTTTAGCCAGCTTCTCGACGACGACGATGAGTTTGAT
TACATGCGCGAAGCTGCAAATGTACGGGATGATCCCTTAGAGTTCCGCGA
AGACTTACCGGTCAGTCGAAGGGAGGTAGCTCAGCTTTTGTCAGAACGTG
ATATCGCTCTGCGCAGTCAGAAAAGACAACGGACAAGACGAGCGGCCTCG
GCAGCAGCGGCTTCAGGAATCCCCCCACTATTTCCCCCTAACCTCACCCC
GGTGCCGAGCACTTCTAGGCCAGTTCCATCCATTGCACCTGTGGCTCCCG
TCACCTCTGTTCCTCCTGCTACTCCTACAGCTCATATCGCCCCTGTTGCA
CCTCCCACTACTGTTGCCCCTGCCACCCCTGTGACGGCACCAAAGGCAGC
AACTGCAAGTCACATGCAGCAGCAAGCTTTGCTTCCAAGCGCGGTTGCAT
CGTTCTCGCCAGTTTGTTTATCGCAGTTTCAACATCAGCTAAAAGCGTTT
GTACAGATTTTGACTCATGTGCATGCGAATTCTGCGAAAAGTGTGCGCAT
GAGCTCTGACGAACAACAAGATGCTGTTGCTAAAGTTGTGTATGACAAGT
CCGAGATCATGTTGAAACGAGTCTTAGAGAATAGAAACACATCTGTAGCA
TATCATGCTATGCTGGAAACTCACATCATGCATATAGCCCGTTTTTCGGA
TGGGCTTTCGTTCCGTCAGTTTGAGCAATGCTTTGCAAAACAGAATCGTA
GAAAGTCTGTGTATGGAATAGAAGGCCTCGAAGACATTGAGGCGTTTCTA
AATGATTGTCAGACGATAGCAATTGATCAAATGCCTGGCCGAGCGTTGGA
GCGAGTGGAGAAGATTTCGCAACCTCATCTCAAGCAGGCTCTTATGACGA
GAAGACGTCAGTTTACTTTGTCTGGGGCCCGCGAAGGCTGGTATACGTGG
ACTGCTGAAGATGACAGACTTCTCGCTCTGACAATCGCCAAGTACGGCAG
GGAGGTGGCAGAATATTCGAAAGACCTACTGCCTCATAGGATGGAGGAAG
ACTGTCAGGCGCGAGTGCGGCATCTGTGTTCTCGGCGATGCACGGACAAT
GCTGTGAAGAGACAAATGATGCTTATTAGTGCTCCTCTTAACCAACAAGA
GGCCATACTTGTACAACACGGGCTGCGTGTGTTTGGGGGGCGTGTCGAAG
ATGAAGAGGTGTGGAAACGAATTCAAAGAGAACTACTTCCTGGAAGGCAG
TGGTCCTTGTTACAGAAACTATGGATGTGGAGGGAGGCAAGGAAGAAGAC
GAAGGCGAGGTATAGGGCGAAAACCAGTCAGAAGAAGAAGGCAATGAAGA
ACGCGTCAAAGAGAGATTCTAACACGGTGGCTGATGGATGA