Ggra164.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra164.t1
Unique Name	Ggra164.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000940_pilon	contig	tig00000940_pilon:72809..74260 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra164	Ggra164	Gracilaria gracilis GNS1m male	gene	tig00000940_pilon 72809..74260 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra164.t1.start1	Ggra164.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000940_pilon 72809..72811 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra164.t1.CDS1	Ggra164.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000940_pilon 72809..74260 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra164.t1.exon1	Ggra164.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000940_pilon 72809..74260 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra164.t1.stop1	Ggra164.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000940_pilon 74258..74260 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra164.t1	Ggra164.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000940_pilon 72809..74260 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000940_pilon:72809..74260+
coding sequence from alignment at tig00000940_pilon:72809..74260+

mRNA sequence

>Ggra164.t1 ID=Ggra164.t1|Name=Ggra164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=484bp
MTSAPPLSDWRQSPPPASSPPPALRAPSPTTHNLSTPPPSSQPTLQSQPQ
SLPPSQPPPSQPPPSQPPPPPHQQHVPHPLPQAPRPPQPVSVPPISQTLM
PQPPMSQPPMSRAPLLPQPALSQPLPPPQPPAMSQPFSQPLPQPLPPLPP
PTNPTPSPAYAPAPVSVHHPPSQYAQHYSSALPSYAYPSLSPADARSQPP
LTAIHPPPQQTYPHTFNSASSALFEAIESQEANDNNALESIANVAAEQPR
VPTAPPPYSSSAPAFPYSRFAPNVPELFCYGSAAPPSSMMHHAPPHMPLP
PAGPSSVAATPLSKREKRRSTSSASTPPCKQFKVIHEDIVGDGFPCSSCG
LTFASKRQRDHHLRQEHERSFECNKCTSRFKTKSDANRHIRIVHDRIRPY
ACNRCPRTFSERNKLRRHSETVHQKLRPYACPVCSARFGELGNLRQHTGS
LHPDVNVDTAAIRSRAAASMQQQNQQPHSQIRS*

spliced messenger RNA

>Ggra164.t1 ID=Ggra164.t1|Name=Ggra164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000940_pilon:72809..74260+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCCGCTCCACCCCTATCCGACTGGCGTCAGTCTCCCCCGCCCGC
CTCCTCGCCCCCGCCCGCGCTCCGCGCGCCTTCCCCCACCACGCACAACC
TGtccacgccgccgccgtcgtcgcagcctactctccaatcccaaccgcaa
tccttgccgccgtcgcaaccgccgccgtcgcaaccgccgccgtcgcaacc
gccgccgccgccgcaccagcagcacgtcccgcacccactACCACAAGCCC
CTCGCCCGCCTCAACCCGTATCGGTCCCACCCATCTCACAGACGCTCATG
CCGCAGCCGCCCATGTCACAGCCGCCCATGTCGCGCGCACCGCTGTTGCC
GCAGCCGGCCTTATCGCAACCACTGCCGCCACCACAGCCGCCTGCCATGT
CGCAGCCCTTCTCTCAACCGCTgccgcagccgctgcctccactaccgcct
ccgactaaccccactccctctcctgcctacgcccccgcccccgtctccgT
GCATCACCCCCCGTCGCAGTATGCGCAGCACTACTCCTCCGCACTTCCAT
CATATGCATACCCGTCCCTTTCTCCAGCCGACGCGCGTTCGCAGCCGCCG
CTCACGGCTATACACCCGCCGCCACAACAAACATACCCTCATACTTTTAA
CTCTGCGTCCTCAGCGCTGTTTGAGGCCATCGAATCGCAGGAAGCTAATG
ACAACAATGCGCTGGAAAGCATAGCCAACGTCGCGGCTGAGCAGCCGCGA
GTACCAACTGCTCCCCCACCTTATTCTTCTTCTGCTCCAGCCTTTCCATA
CTCCCGCTTCGCACCAAACGTGCCGGAGCTGTTCTGCTACGGCTCCGCTG
CCCCACCGTCGTCCATGATGCATCATGCACCGCCACACATGCCACTACCA
CCCGCCGGCCCGTCCTCCGTGGCGGCGACGCCGCTGTCAAAGCGTGAGAA
GCGTCGCTCTACATCGTCCGCCTCTACGCCGCCATGCAAACAGTTCAAGG
TGATCCATGAGGACATTGTGGGCGACGGCTTCCCATGCAGCTCTTGTGGT
TTGACGTTTGCCAGCAAACGCCAGCGCGATCACCACCTTCGTCAAGAGCA
CGAACGCAGCTTTGAGTGCAACAAGTGCACGAGCCGCTTCAAGACCAAAT
CGGATGCCAATCGGCACATCCGCATCGTTCACGACCGCATCCGGCCGTAC
GCGTGCAACAGGTGTCCGCGCACATTCTCCGAAAGGAACAAGCTCCGAAG
GCATAGTGAGACGGTGCACCAAAAGCTGCGCCCCTATGCCTGCCCGGTGT
GTTCCGCTCGATTCGGAGAGCTGGGTAACTTGCGTCAACACACCGGGTCT
CTTCACCCGGATGTGAATGTGGATACGGCGGCGATCAGAAGCCGAGCTGC
TGCGTCGATGCAACAGCAAAATCAGCAGCCGCACTCGCAGATCCGCTCAT
GA

protein sequence of Ggra164.t1

>Ggra164.t1 ID=Ggra164.t1|Name=Ggra164.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MTSAPPLSDWRQSPPPASSPPPALRAPSPTTHNLSTPPPSSQPTLQSQPQ
SLPPSQPPPSQPPPSQPPPPPHQQHVPHPLPQAPRPPQPVSVPPISQTLM
PQPPMSQPPMSRAPLLPQPALSQPLPPPQPPAMSQPFSQPLPQPLPPLPP
PTNPTPSPAYAPAPVSVHHPPSQYAQHYSSALPSYAYPSLSPADARSQPP
LTAIHPPPQQTYPHTFNSASSALFEAIESQEANDNNALESIANVAAEQPR
VPTAPPPYSSSAPAFPYSRFAPNVPELFCYGSAAPPSSMMHHAPPHMPLP
PAGPSSVAATPLSKREKRRSTSSASTPPCKQFKVIHEDIVGDGFPCSSCG
LTFASKRQRDHHLRQEHERSFECNKCTSRFKTKSDANRHIRIVHDRIRPY
ACNRCPRTFSERNKLRRHSETVHQKLRPYACPVCSARFGELGNLRQHTGS
LHPDVNVDTAAIRSRAAASMQQQNQQPHSQIRS*

mRNA from alignment at tig00000940_pilon:72809..74260+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra164.t1 ID=Ggra164.t1|Name=Ggra164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000940_pilon:72809..74260+ (Gracilaria gracilis GNS1m male)
ATGACCTCCGCTCCACCCCTATCCGACTGGCGTCAGTCTCCCCCGCCCGC
CTCCTCGCCCCCGCCCGCGCTCCGCGCGCCTTCCCCCACCACGCACAACC
TGtccacgccgccgccgtcgtcgcagcctactctccaatcccaaccgcaa
tccttgccgccgtcgcaaccgccgccgtcgcaaccgccgccgtcgcaacc
gccgccgccgccgcaccagcagcacgtcccgcacccactACCACAAGCCC
CTCGCCCGCCTCAACCCGTATCGGTCCCACCCATCTCACAGACGCTCATG
CCGCAGCCGCCCATGTCACAGCCGCCCATGTCGCGCGCACCGCTGTTGCC
GCAGCCGGCCTTATCGCAACCACTGCCGCCACCACAGCCGCCTGCCATGT
CGCAGCCCTTCTCTCAACCGCTgccgcagccgctgcctccactaccgcct
ccgactaaccccactccctctcctgcctacgcccccgcccccgtctccgT
GCATCACCCCCCGTCGCAGTATGCGCAGCACTACTCCTCCGCACTTCCAT
CATATGCATACCCGTCCCTTTCTCCAGCCGACGCGCGTTCGCAGCCGCCG
CTCACGGCTATACACCCGCCGCCACAACAAACATACCCTCATACTTTTAA
CTCTGCGTCCTCAGCGCTGTTTGAGGCCATCGAATCGCAGGAAGCTAATG
ACAACAATGCGCTGGAAAGCATAGCCAACGTCGCGGCTGAGCAGCCGCGA
GTACCAACTGCTCCCCCACCTTATTCTTCTTCTGCTCCAGCCTTTCCATA
CTCCCGCTTCGCACCAAACGTGCCGGAGCTGTTCTGCTACGGCTCCGCTG
CCCCACCGTCGTCCATGATGCATCATGCACCGCCACACATGCCACTACCA
CCCGCCGGCCCGTCCTCCGTGGCGGCGACGCCGCTGTCAAAGCGTGAGAA
GCGTCGCTCTACATCGTCCGCCTCTACGCCGCCATGCAAACAGTTCAAGG
TGATCCATGAGGACATTGTGGGCGACGGCTTCCCATGCAGCTCTTGTGGT
TTGACGTTTGCCAGCAAACGCCAGCGCGATCACCACCTTCGTCAAGAGCA
CGAACGCAGCTTTGAGTGCAACAAGTGCACGAGCCGCTTCAAGACCAAAT
CGGATGCCAATCGGCACATCCGCATCGTTCACGACCGCATCCGGCCGTAC
GCGTGCAACAGGTGTCCGCGCACATTCTCCGAAAGGAACAAGCTCCGAAG
GCATAGTGAGACGGTGCACCAAAAGCTGCGCCCCTATGCCTGCCCGGTGT
GTTCCGCTCGATTCGGAGAGCTGGGTAACTTGCGTCAACACACCGGGTCT
CTTCACCCGGATGTGAATGTGGATACGGCGGCGATCAGAAGCCGAGCTGC
TGCGTCGATGCAACAGCAAAATCAGCAGCCGCACTCGCAGATCCGCTCAT
GA

Coding sequence (CDS) from alignment at tig00000940_pilon:72809..74260+

>Ggra164.t1 ID=Ggra164.t1|Name=Ggra164.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1452bp|location=Sequence derived from alignment at tig00000940_pilon:72809..74260+ (Gracilaria gracilis GNS1m male)
ATGACCTCCGCTCCACCCCTATCCGACTGGCGTCAGTCTCCCCCGCCCGC
CTCCTCGCCCCCGCCCGCGCTCCGCGCGCCTTCCCCCACCACGCACAACC
TGtccacgccgccgccgtcgtcgcagcctactctccaatcccaaccgcaa
tccttgccgccgtcgcaaccgccgccgtcgcaaccgccgccgtcgcaacc
gccgccgccgccgcaccagcagcacgtcccgcacccactACCACAAGCCC
CTCGCCCGCCTCAACCCGTATCGGTCCCACCCATCTCACAGACGCTCATG
CCGCAGCCGCCCATGTCACAGCCGCCCATGTCGCGCGCACCGCTGTTGCC
GCAGCCGGCCTTATCGCAACCACTGCCGCCACCACAGCCGCCTGCCATGT
CGCAGCCCTTCTCTCAACCGCTgccgcagccgctgcctccactaccgcct
ccgactaaccccactccctctcctgcctacgcccccgcccccgtctccgT
GCATCACCCCCCGTCGCAGTATGCGCAGCACTACTCCTCCGCACTTCCAT
CATATGCATACCCGTCCCTTTCTCCAGCCGACGCGCGTTCGCAGCCGCCG
CTCACGGCTATACACCCGCCGCCACAACAAACATACCCTCATACTTTTAA
CTCTGCGTCCTCAGCGCTGTTTGAGGCCATCGAATCGCAGGAAGCTAATG
ACAACAATGCGCTGGAAAGCATAGCCAACGTCGCGGCTGAGCAGCCGCGA
GTACCAACTGCTCCCCCACCTTATTCTTCTTCTGCTCCAGCCTTTCCATA
CTCCCGCTTCGCACCAAACGTGCCGGAGCTGTTCTGCTACGGCTCCGCTG
CCCCACCGTCGTCCATGATGCATCATGCACCGCCACACATGCCACTACCA
CCCGCCGGCCCGTCCTCCGTGGCGGCGACGCCGCTGTCAAAGCGTGAGAA
GCGTCGCTCTACATCGTCCGCCTCTACGCCGCCATGCAAACAGTTCAAGG
TGATCCATGAGGACATTGTGGGCGACGGCTTCCCATGCAGCTCTTGTGGT
TTGACGTTTGCCAGCAAACGCCAGCGCGATCACCACCTTCGTCAAGAGCA
CGAACGCAGCTTTGAGTGCAACAAGTGCACGAGCCGCTTCAAGACCAAAT
CGGATGCCAATCGGCACATCCGCATCGTTCACGACCGCATCCGGCCGTAC
GCGTGCAACAGGTGTCCGCGCACATTCTCCGAAAGGAACAAGCTCCGAAG
GCATAGTGAGACGGTGCACCAAAAGCTGCGCCCCTATGCCTGCCCGGTGT
GTTCCGCTCGATTCGGAGAGCTGGGTAACTTGCGTCAACACACCGGGTCT
CTTCACCCGGATGTGAATGTGGATACGGCGGCGATCAGAAGCCGAGCTGC
TGCGTCGATGCAACAGCAAAATCAGCAGCCGCACTCGCAGATCCGCTCAT
GA