Ggra164.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra164.t1
Unique NameGgra164.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length484
Homology
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BLAST of Ggra164.t1 vs. uniprot
Match: A0A2V3IEQ2 (PR domain zinc finger protein 16 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEQ2_9FLOR)

HSP 1 Score: 118 bits (295), Expect = 1.910e-25
Identity = 191/335 (57.01%), Postives = 217/335 (64.78%), Query Frame = 0 
Query:  177 HYSSALPSYAYPSLSPADA---RSQP-PLTAIXXXPQQTYPHTFNSASSALFEAIESQE----ANDNNALESIANVAAEQPRVPTAPPPYSSSAPA----------------FPYSRFAPNVPELFCYGSAAP----PSXXXXXXXXHMPLPPAGPSSVAATPLSKREKRRSTSSASTPPCKQFKVIHEDIVGDGFPCSSCGLTFASKRQRDHHLRQEHERSFEXXXXXXXXXXXXXXXXXXXXVXDRIRPYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDVNVDTAAIRSRAAASMQQQNQQPHSQIRS 483
            HYS  LPSYAYP +SP  A   R+ P PL + XXX    Y H F  A +ALF+AI + E    A DNN L ++A +AA+QPRVPT   PY SS+P                 FPY RFAP + ++F  G A      P XXXXXXXX           ++ TP        +T++ S  P            G GF CS+C  TF +KRQRD+H+R EHERSF XXXXXXXXXXXXXXXXXXXX XDRIRPY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDV VDTAAIR+RAAA+        HSQI+S
Sbjct:   95 HYSHPLPSYAYPPVSPPSAAIPRTHPAPLPSXXXXXPPHYRHAF--APNALFDAISATEHAAAAADNNPLTTVAALAADQPRVPTLSKPYPSSSPTAXXXXXXXXXXXXXXXFPYQRFAPGMHDIFWQGHAPSQFVHPPXXXXXXXXXXXXXXXXXXXISQTP----HXPSATANGSNKPAGS---------GTGFNCSACSATFPNKRQRDNHVRSEHERSFAXXXXXXXXXXXXXXXXXXXXXXDRIRPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDVQVDTAAIRNRAAATTL------HSQIQS 408
The following BLAST results are available for this feature:
BLAST of Ggra164.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IEQ21.910e-2557.01PR domain zinc finger protein 16 n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 400..423
e-value: 0.027
score: 23.6
coord: 371..394
e-value: 0.026
score: 23.7
coord: 344..367
e-value: 0.18
score: 20.9
coord: 429..452
e-value: 0.1
score: 21.7
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 371..394
e-value: 0.0015
score: 18.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 346..367
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 402..423
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 373..394
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 431..452
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 429..452
score: 8.891327
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 344..372
score: 9.203074
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 371..399
score: 12.008791
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 400..428
score: 13.338909
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 310..397
e-value: 5.0E-10
score: 41.1
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 398..478
e-value: 5.5E-14
score: 53.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 291..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 291..305
NoneNo IPR availablePANTHERPTHR23226ZINC FINGER AND SCAN DOMAIN-CONTAININGcoord: 343..449
NoneNo IPR availablePANTHERPTHR23226:SF167IP01388P-RELATEDcoord: 343..449
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 344..392
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 380..438

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000940_piloncontigtig00000940_pilon:72809..74260 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra164.t1Ggra164.t1Gracilaria gracilis GNS1m malemRNAtig00000940_pilon 72809..74260 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra164.t1 ID=Ggra164.t1|Name=Ggra164.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MTSAPPLSDWRQSPPPASSPPPALRAPSPTTHNLSTPPPSSQPTLQSQPQ
SLPPSQPPPSQPPPSQPPPPPHQQHVPHPLPQAPRPPQPVSVPPISQTLM
PQPPMSQPPMSRAPLLPQPALSQPLPPPQPPAMSQPFSQPLPQPLPPLPP
PTNPTPSPAYAPAPVSVHHPPSQYAQHYSSALPSYAYPSLSPADARSQPP
LTAIHPPPQQTYPHTFNSASSALFEAIESQEANDNNALESIANVAAEQPR
VPTAPPPYSSSAPAFPYSRFAPNVPELFCYGSAAPPSSMMHHAPPHMPLP
PAGPSSVAATPLSKREKRRSTSSASTPPCKQFKVIHEDIVGDGFPCSSCG
LTFASKRQRDHHLRQEHERSFECNKCTSRFKTKSDANRHIRIVHDRIRPY
ACNRCPRTFSERNKLRRHSETVHQKLRPYACPVCSARFGELGNLRQHTGS
LHPDVNVDTAAIRSRAAASMQQQNQQPHSQIRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf