Ggra1639.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1639.t1
Unique NameGgra1639.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:230420..231379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005849297.1
PFAMsRWP-RK
Max annot lvl3041|Chlorophyta
Evalue3.87e-06
EggNOG OGs28K91@1|root,2QSPQ@2759|Eukaryota,37RG9@33090|Viridiplantae,34N1G@3041|Chlorophyta
DescriptionRWP-RK domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1639Ggra1639Gracilaria gracilis GNS1m malegenetig00000050_pilon 230420..231379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1639.t1Ggra1639.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 230420..231379 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1639.t1.stop1Ggra1639.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 230420..230422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1639.t1.CDS1Ggra1639.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 230420..230783 -
Ggra1639.t1.CDS2Ggra1639.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 231084..231379 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1639.t1.exon1Ggra1639.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 230420..230783 -
Ggra1639.t1.exon2Ggra1639.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 231084..231379 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1639.t1.intron1Ggra1639.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 230784..231083 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1639.t1.start1Ggra1639.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 231377..231379 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1639.t1 ID=Ggra1639.t1|Name=Ggra1639.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=220bp
MPPSGLTFAQCEQYFHLPVALAALRLRVSRPTISKVLRRHGVRRWPFRKL
QAQARQLSTLRASPRLPPDSARCLSPAHSVRRERVAAQRLLSARSARRDA
PHTPPESPRCASPWRNDAFPTWASGGEGWRASRPPSAKAVFGGAWTRGVF
TDSEEGVHFQFLRPGQRVCTPKLSQNAAAGSDGFEQYGALEHAEDGLLPF
GDVFGATASFCDSDVWRWL*
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spliced messenger RNA

>Ggra1639.t1 ID=Ggra1639.t1|Name=Ggra1639.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000050_pilon:230420..231379- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGTCCGGCCTCACCTTCGCGCAGTGCGAGCAGTACTTCCATCT
GCCCGTCGCGCTGGCTGCCCTGCGTCTGCGCGTGTCGCGCCCCACCATCT
CCAAGGTGCTGCGTCGCCACGGCGTGCGTCGCTGGCCCTTCCGCAAGCTG
CAGGCGCAGGCGCGCCAGCTCTCGACGCTGCGCGCGTCGCCGCGCTTGCC
GCCCGACTCCGCGCGTTGCCTGTCGCCCGCGCACTCTGTGCGCCGCGAGC
GCGTCGCCGCGCAGCGGCTGCTGTCTGCGCGCTCTGCGCGCCGCGACGCG
CCGCACACGCCGCCAGAGTCGCCGCGCTGCGCCAGTCCGTGGCGCAACGA
CGCCTTCCCGACGTGGGCGTCGGGCGGCGAAGGCTGGCGCGCCTCCAGGC
CACCCAGCGCAAAGGCAGTGTTTGGCGGCGCGTGGACGCGCGGCGTCTTC
ACGGACAGTGAGGAAGGCGTTCACTTCCAGTTTCTGAGGCCGGGGCAGCG
CGTTTGCACGCCCAAGCTGTCGCAGAACGCCGCTGCGGGCAGCGATGGCT
TTGAGCAGTATGGCGCGCTGGAGCACGCCGAAGACGGCCTGCTTCCGTTT
GGCGACGTTTTTGGCGCTACTGCTTCTTTCTGCGACTCTGATGTGTGGCG
CTGGCTCTGA
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protein sequence of Ggra1639.t1

>Ggra1639.t1 ID=Ggra1639.t1|Name=Ggra1639.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MPPSGLTFAQCEQYFHLPVALAALRLRVSRPTISKVLRRHGVRRWPFRKL
QAQARQLSTLRASPRLPPDSARCLSPAHSVRRERVAAQRLLSARSARRDA
PHTPPESPRCASPWRNDAFPTWASGGEGWRASRPPSAKAVFGGAWTRGVF
TDSEEGVHFQFLRPGQRVCTPKLSQNAAAGSDGFEQYGALEHAEDGLLPF
GDVFGATASFCDSDVWRWL*
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mRNA from alignment at tig00000050_pilon:230420..231379-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1639.t1 ID=Ggra1639.t1|Name=Ggra1639.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000050_pilon:230420..231379- (Gracilaria gracilis GNS1m male)
ATGCCGCCGTCCGGCCTCACCTTCGCGCAGTGCGAGCAGTACTTCCATCT
GCCCGTCGCGCTGGCTGCCCTGCGTCTGCGCGTGTCGCGCCCCACCATCT
CCAAGGTGCTGCGTCGCCACGGCGTGCGTCGCTGGCCCTTCCGCAAGCTG
CAGGCGCAGGCGCGCCAGCTCTCGACGCTGCGCGCGTCGCCGCGCTTGCC
GCCCGACTCCGCGCGTTGCCTGTCGCCCGCGCACTCTGTGCGCCGCGAGC
GCGTCGCCGCGCAGCGGCTGCTGTCTGCGCGCTCTGCGCGCCGCGAGTGC
GCGTCGCCGCCGCCGTCGCCGGTCGTTTGCACGCCGACGCCGCCGTCGCC
GGTCGCTTGCACGCCGCCGCTGCCGCCTTCGCCTGTCGTTTGCACGCCGC
CGCCGCCGCCTTCGCCTGTCGTTTGCACGCCGCCGCCGCCGCCTTCGCCT
GTCGTTTGCACGCCGCCTCCGCCGTCGTCGCCCGTCATTCACACGCCGCC
GTCATCGCCGTCCACGCAGCACACGCCGCTGCCCGCCGCTATGAGGTCGA
CGCCGTCGTCGTGCGCCACGTCTCCGCGCGCCACGCCGCCGGAAAGCGCG
CCGCACACGCCGCCAGAGTCGCCGCGCTGCGCCAGTCCGTGGCGCAACGA
CGCCTTCCCGACGTGGGCGTCGGGCGGCGAAGGCTGGCGCGCCTCCAGGC
CACCCAGCGCAAAGGCAGTGTTTGGCGGCGCGTGGACGCGCGGCGTCTTC
ACGGACAGTGAGGAAGGCGTTCACTTCCAGTTTCTGAGGCCGGGGCAGCG
CGTTTGCACGCCCAAGCTGTCGCAGAACGCCGCTGCGGGCAGCGATGGCT
TTGAGCAGTATGGCGCGCTGGAGCACGCCGAAGACGGCCTGCTTCCGTTT
GGCGACGTTTTTGGCGCTACTGCTTCTTTCTGCGACTCTGATGTGTGGCG
CTGGCTCTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:230420..231379-

>Ggra1639.t1 ID=Ggra1639.t1|Name=Ggra1639.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000050_pilon:230420..231379- (Gracilaria gracilis GNS1m male)
ATGCCGCCGTCCGGCCTCACCTTCGCGCAGTGCGAGCAGTACTTCCATCT
GCCCGTCGCGCTGGCTGCCCTGCGTCTGCGCGTGTCGCGCCCCACCATCT
CCAAGGTGCTGCGTCGCCACGGCGTGCGTCGCTGGCCCTTCCGCAAGCTG
CAGGCGCAGGCGCGCCAGCTCTCGACGCTGCGCGCGTCGCCGCGCTTGCC
GCCCGACTCCGCGCGTTGCCTGTCGCCCGCGCACTCTGTGCGCCGCGAGC
GCGTCGCCGCGCAGCGGCTGCTGTCTGCGCGCTCTGCGCGCCGCGACGCG
CCGCACACGCCGCCAGAGTCGCCGCGCTGCGCCAGTCCGTGGCGCAACGA
CGCCTTCCCGACGTGGGCGTCGGGCGGCGAAGGCTGGCGCGCCTCCAGGC
CACCCAGCGCAAAGGCAGTGTTTGGCGGCGCGTGGACGCGCGGCGTCTTC
ACGGACAGTGAGGAAGGCGTTCACTTCCAGTTTCTGAGGCCGGGGCAGCG
CGTTTGCACGCCCAAGCTGTCGCAGAACGCCGCTGCGGGCAGCGATGGCT
TTGAGCAGTATGGCGCGCTGGAGCACGCCGAAGACGGCCTGCTTCCGTTT
GGCGACGTTTTTGGCGCTACTGCTTCTTTCTGCGACTCTGATGTGTGGCG
CTGGCTCTGA
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