Ggra1546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1546.t1
Unique NameGgra1546.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:424604..425218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008868883.1
Preferred nameRANGRF
PFAMsMog1
Max annot lvl2759|Eukaryota
KEGG koko:K17495
GOsGO:0001947,GO:0002009,GO:0002027,GO:0002028,GO:0003007,GO:0003008,GO:0003013,GO:0003015,GO:0003143,GO:0003254,GO:0003674,GO:0005085,GO:0005087,GO:0005088,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005791,GO:0005829,GO:0005886,GO:0005901,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006888,GO:0006913,GO:0006937,GO:0006942,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0008565,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0010467,GO:0010646,GO:0010959,GO:0010968,GO:0012505,GO:0014704,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016192,GO:0016247,GO:0016973,GO:0017016,GO:0017038,GO:0017080,GO:0019899,GO:0022898,GO:0023051,GO:0023052,GO:0030054,GO:0031110,GO:0031113,GO:0031267,GO:0031291,GO:0031503,GO:0031974,GO:0031981,GO:0032271,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032880,GO:0032886,GO:0032970,GO:0033036,GO:0033043,GO:0033365,GO:0034504,GO:0034613,GO:0034762,GO:0034765,GO:0035050,GO:0035239,GO:0035295,GO:0035556,GO:0042391,GO:0042592,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043269,GO:0044057,GO:0044087,GO:0044291,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048518,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051020,GO:0051028,GO:0051049,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051270,GO:0051493,GO:0051641,GO:0051649,GO:0051716,GO:0055117,GO:0060047,GO:0060341,GO:0060429,GO:0060562,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072359,GO:0072594,GO:0086004,GO:0090226,GO:0090257,GO:0098589,GO:0098590,GO:0098772,GO:0098805,GO:0098857,GO:0098900,GO:0098901,GO:0098902,GO:0098905,GO:0098909,GO:1900825,GO:1902305,GO:1902903,GO:1903076,GO:1903078,GO:1903115,GO:1903522,GO:1903779,GO:1903827,GO:1903829,GO:1904062,GO:1904375,GO:1904377,GO:1905475,GO:1905477,GO:2000008,GO:2000010,GO:2000649
Evalue1.43e-33
EggNOG OGsKOG3329@1|root,KOG3329@2759|Eukaryota
Descriptionregulation of microtubule nucleation by Ran protein signal transduction
COG categoryS
BRITEko00000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1546Ggra1546Gracilaria gracilis GNS1m malegenetig00000844_pilon 424604..425218 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1546.t1.start1Ggra1546.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 424604..424606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1546.t1.CDS1Ggra1546.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 424604..425218 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1546.t1.exon1Ggra1546.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 424604..425218 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1546.t1.stop1Ggra1546.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 425216..425218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1546.t1Ggra1546.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 424604..425218 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1546.t1 ID=Ggra1546.t1|Name=Ggra1546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MVGSKSSEGQRSLFGGAITTVIPAEFADVSKIRQIPDNQEVFSHAETDRS
VIVEILEMDPSIPSESHQTPASHHFNIIAHDSSAAQCSLTFTQQLHATNY
PGLRGGDDNIHISFAQGQHVVSKFRDKDLFANTVNVYVVCIRLPKFTTDI
LLSFNDPVALHPQSSSTRLGSTVANPQQTDLTVRSAILQQVLDSFVIHDW
SLFQ*
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spliced messenger RNA

>Ggra1546.t1 ID=Ggra1546.t1|Name=Ggra1546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000844_pilon:424604..425218+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGTAGCAAATCGTCAGAAGGCCAACGTTCTCTTTTCGGCGGCGC
CATCACCACCGTCATCCCCGCCGAGTTCGCCGATGTATCGAAGATAAGAC
AAATACCAGACAATCAAGAGGTGTTCTCACATGCCGAAACCGACCGTTCA
GTCATAGTCGAGATTTTGGAAATGGACCCTTCTATCCCATCTGAGTCGCA
TCAAACGCCAGCCAGCCATCATTTCAATATCATTGCGCATGATTCCTCCG
CCGCTCAATGCTCTTTAACTTTTACCCAACAATTGCATGCTACCAATTAT
CCTGGGTTGAGAGGCGGTGATGATAATATTCACATCTCATTTGCACAGGG
ACAGCATGTTGTGTCAAAGTTTCGAGATAAGGACTTGTTTGCCAATACCG
TCAACGTATATGTTGTTTGTATTCGTTTGCCCAAATTCACTACCGATATA
CTGCTATCGTTTAATGACCCGGTTGCCTTGCATCCACAATCGTCGAGTAC
TAGATTGGGTTCAACAGTCGCTAATCCACAACAAACAGACCTTACTGTTC
GATCCGCCATCCTTCAACAAGTGCTAGATTCCTTCGTCATTCATGATTGG
AGTTTGTTTCAATGA
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protein sequence of Ggra1546.t1

>Ggra1546.t1 ID=Ggra1546.t1|Name=Ggra1546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MVGSKSSEGQRSLFGGAITTVIPAEFADVSKIRQIPDNQEVFSHAETDRS
VIVEILEMDPSIPSESHQTPASHHFNIIAHDSSAAQCSLTFTQQLHATNY
PGLRGGDDNIHISFAQGQHVVSKFRDKDLFANTVNVYVVCIRLPKFTTDI
LLSFNDPVALHPQSSSTRLGSTVANPQQTDLTVRSAILQQVLDSFVIHDW
SLFQ*
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mRNA from alignment at tig00000844_pilon:424604..425218+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1546.t1 ID=Ggra1546.t1|Name=Ggra1546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000844_pilon:424604..425218+ (Gracilaria gracilis GNS1m male)
ATGGTCGGTAGCAAATCGTCAGAAGGCCAACGTTCTCTTTTCGGCGGCGC
CATCACCACCGTCATCCCCGCCGAGTTCGCCGATGTATCGAAGATAAGAC
AAATACCAGACAATCAAGAGGTGTTCTCACATGCCGAAACCGACCGTTCA
GTCATAGTCGAGATTTTGGAAATGGACCCTTCTATCCCATCTGAGTCGCA
TCAAACGCCAGCCAGCCATCATTTCAATATCATTGCGCATGATTCCTCCG
CCGCTCAATGCTCTTTAACTTTTACCCAACAATTGCATGCTACCAATTAT
CCTGGGTTGAGAGGCGGTGATGATAATATTCACATCTCATTTGCACAGGG
ACAGCATGTTGTGTCAAAGTTTCGAGATAAGGACTTGTTTGCCAATACCG
TCAACGTATATGTTGTTTGTATTCGTTTGCCCAAATTCACTACCGATATA
CTGCTATCGTTTAATGACCCGGTTGCCTTGCATCCACAATCGTCGAGTAC
TAGATTGGGTTCAACAGTCGCTAATCCACAACAAACAGACCTTACTGTTC
GATCCGCCATCCTTCAACAAGTGCTAGATTCCTTCGTCATTCATGATTGG
AGTTTGTTTCAATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:424604..425218+

>Ggra1546.t1 ID=Ggra1546.t1|Name=Ggra1546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000844_pilon:424604..425218+ (Gracilaria gracilis GNS1m male)
ATGGTCGGTAGCAAATCGTCAGAAGGCCAACGTTCTCTTTTCGGCGGCGC
CATCACCACCGTCATCCCCGCCGAGTTCGCCGATGTATCGAAGATAAGAC
AAATACCAGACAATCAAGAGGTGTTCTCACATGCCGAAACCGACCGTTCA
GTCATAGTCGAGATTTTGGAAATGGACCCTTCTATCCCATCTGAGTCGCA
TCAAACGCCAGCCAGCCATCATTTCAATATCATTGCGCATGATTCCTCCG
CCGCTCAATGCTCTTTAACTTTTACCCAACAATTGCATGCTACCAATTAT
CCTGGGTTGAGAGGCGGTGATGATAATATTCACATCTCATTTGCACAGGG
ACAGCATGTTGTGTCAAAGTTTCGAGATAAGGACTTGTTTGCCAATACCG
TCAACGTATATGTTGTTTGTATTCGTTTGCCCAAATTCACTACCGATATA
CTGCTATCGTTTAATGACCCGGTTGCCTTGCATCCACAATCGTCGAGTAC
TAGATTGGGTTCAACAGTCGCTAATCCACAACAAACAGACCTTACTGTTC
GATCCGCCATCCTTCAACAAGTGCTAGATTCCTTCGTCATTCATGATTGG
AGTTTGTTTCAATGA
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