Ggra1276.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1276.t1
Unique NameGgra1276.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:3027..4360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1276Ggra1276Gracilaria gracilis GNS1m malegenetig00000235_pilon 3027..4360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1276.t1Ggra1276.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 3027..4360 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1276.t1.stop1Ggra1276.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 3027..3029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1276.t1.CDS1Ggra1276.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 3027..3193 -
Ggra1276.t1.CDS2Ggra1276.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000235_pilon 3356..3409 -
Ggra1276.t1.CDS3Ggra1276.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000235_pilon 4108..4360 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1276.t1.exon1Ggra1276.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 3027..3193 -
Ggra1276.t1.exon2Ggra1276.t1.exon2Gracilaria gracilis GNS1m maleexontig00000235_pilon 3356..3409 -
Ggra1276.t1.exon3Ggra1276.t1.exon3Gracilaria gracilis GNS1m maleexontig00000235_pilon 4108..4360 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1276.t1.intron1Ggra1276.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000235_pilon 3194..3355 -
Ggra1276.t1.intron2Ggra1276.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000235_pilon 3410..4107 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1276.t1.start1Ggra1276.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 4358..4360 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1276.t1 ID=Ggra1276.t1|Name=Ggra1276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=158bp
MKIICLFILAVAAVLYSAVGMAIPKKNSMISSSHKSEMATVHGMEVDAAV
RDWDDDNDDGWGDDDGRKYYQPRYWNPYWAYYYPLLETPVFLREPVVPPS
LDGVSLWIAHAFTSSITSVLSFDLFYCVSCDVIHTILVLSRNTALLSKLI
YVPRPQD*
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spliced messenger RNA

>Ggra1276.t1 ID=Ggra1276.t1|Name=Ggra1276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000235_pilon:3027..4360- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATCATCTGCCTTTTTATCTTGGCTGTTGCTGCAGTGCTCTACTC
CGCTGTTGGCATGGCTATACCGAAGAAGAATAGCATGATAAGCTCCTCTC
ACAAGTCTGAGATGGCGACCGTGCATGGTATGGAGGTGGATGCAGCTGTC
CGCGACTGGGATGATGATAATGATGATGGCTGGGGTGATGATGACGGACG
CAAATACTACCAGCCCCGTTACTGGAATCCTTATTGGGCTTACTACTACC
CCCTGCTCGAGACTCCTGTCTTTCTTCGAGAGCCAGTCGTTCCCCCCTCT
CTTGACGGTGTGTCGTTATGGATCGCACATGCGTTCACTTCAAGCATTAC
TTCCGTGTTAAGCTTTGATCTTTTTTATTGCGTATCATGTGATGTGATAC
ATACTATTCTCGTCCTCAGTCGCAACACTGCGCTACTCTCAAAGCTCATT
TACGTTCCTCGTCCTCAAGATTAG
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protein sequence of Ggra1276.t1

>Ggra1276.t1 ID=Ggra1276.t1|Name=Ggra1276.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=158bp
MKIICLFILAVAAVLYSAVGMAIPKKNSMISSSHKSEMATVHGMEVDAAV
RDWDDDNDDGWGDDDGRKYYQPRYWNPYWAYYYPLLETPVFLREPVVPPS
LDGVSLWIAHAFTSSITSVLSFDLFYCVSCDVIHTILVLSRNTALLSKLI
YVPRPQD*
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mRNA from alignment at tig00000235_pilon:3027..4360-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1276.t1 ID=Ggra1276.t1|Name=Ggra1276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1334bp|location=Sequence derived from alignment at tig00000235_pilon:3027..4360- (Gracilaria gracilis GNS1m male)
ATGAAGATCATCTGCCTTTTTATCTTGGCTGTTGCTGCAGTGCTCTACTC
CGCTGTTGGCATGGCTATACCGAAGAAGAATAGCATGATAAGCTCCTCTC
ACAAGTCTGAGATGGCGACCGTGCATGGTATGGAGGTGGATGCAGCTGTC
CGCGACTGGGATGATGATAATGATGATGGCTGGGGTGATGATGACGGACG
CAAATACTACCAGCCCCGTTACTGGAATCCTTATTGGGCTTACTACTACC
CCCGTCAGTACCAGCACTACAGGCCGAGGAAGGCTGCGCCGAAAAGGAAG
AGGTTCGGATGCTCTGATGATGATTGCAGCGATGATGACCGTCGTTAACA
GCGGCAGAAGATTGGTATAGAAGTTGATGGGCCTCCTATCACTCTGTTCT
CCTTGCTGAACTAGTAGCTAGTAAGGAGTTTTAACTGCGAACAAATGTAG
TCGTGTACGGATTAGCATCCGGAAAACTGGCACTCGGCGGAATGATTTGA
TAGTTCATAACACCTTGTGCCTCTCCAGTAAATTTGATTGTTTATGCGTT
GACAATGTGCTTCAGAATCTCGTCGGCGGGTTCACGGGAGTTGGTGTTGC
ATCTCTGACGAAACTGCGCAAGTGCGCGCAGCAACATCTGCTTGTTGAAG
AGTGCTTTCCATAATTGCGAACGCGAAACAAGTTTGGCAAATTATTTGCC
TTTGCCCACGAAACGTGTGCAGATGTACACGTGTTCAACTCAGTTGACTC
AACTGAGTTGAACACGTGTACATCGAATTGAATCATGATGCATCATGCGA
TGATGTTCGCAACTGCTTTGCCGGAATCTTCTGCAGATGGAACTTCCATC
GCCGCGCTGCCGTTGATGTAAAATTACCGTTGGTACCAACGGTACATCCA
TCACGTGAGACTCGCTCACATGTGCCGCTGGCAATCCCCTCCGTTTGCCA
GTGCTCGAGACTCCTGTCTTTCTTCGAGAGCCAGTCGTTCCCCCCTCTCT
TGACGGTGAGTCATCGCTCACTTTGTTGTCGATAACTGATCTTGCATGCT
CTCGGACACTGTTTGCTGCTCCCTTGATCAAGTTAAATCAGTTAACTCTC
CAAGCTGCAGCTTTTTTTCCCGTGTGCAGCTGTTGCTGACAATGCTTTGT
CAACTTGCGCCGTTCAGGTGTGTCGTTATGGATCGCACATGCGTTCACTT
CAAGCATTACTTCCGTGTTAAGCTTTGATCTTTTTTATTGCGTATCATGT
GATGTGATACATACTATTCTCGTCCTCAGTCGCAACACTGCGCTACTCTC
AAAGCTCATTTACGTTCCTCGTCCTCAAGATTAG
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Coding sequence (CDS) from alignment at tig00000235_pilon:3027..4360-

>Ggra1276.t1 ID=Ggra1276.t1|Name=Ggra1276.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=474bp|location=Sequence derived from alignment at tig00000235_pilon:3027..4360- (Gracilaria gracilis GNS1m male)
ATGAAGATCATCTGCCTTTTTATCTTGGCTGTTGCTGCAGTGCTCTACTC
CGCTGTTGGCATGGCTATACCGAAGAAGAATAGCATGATAAGCTCCTCTC
ACAAGTCTGAGATGGCGACCGTGCATGGTATGGAGGTGGATGCAGCTGTC
CGCGACTGGGATGATGATAATGATGATGGCTGGGGTGATGATGACGGACG
CAAATACTACCAGCCCCGTTACTGGAATCCTTATTGGGCTTACTACTACC
CCCTGCTCGAGACTCCTGTCTTTCTTCGAGAGCCAGTCGTTCCCCCCTCT
CTTGACGGTGTGTCGTTATGGATCGCACATGCGTTCACTTCAAGCATTAC
TTCCGTGTTAAGCTTTGATCTTTTTTATTGCGTATCATGTGATGTGATAC
ATACTATTCTCGTCCTCAGTCGCAACACTGCGCTACTCTCAAAGCTCATT
TACGTTCCTCGTCCTCAAGATTAG
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