Ggra1275.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1275.t1
Unique NameGgra1275.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:2481..2993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1229172.JQFA01000004_gene864
PFAMsCAP,HemolysinCabind,LysM
Max annot lvl1117|Cyanobacteria
Evalue1.06e-24
EggNOG OGsCOG2340@1|root,COG2340@2|Bacteria,1G4UZ@1117|Cyanobacteria,1HAAV@1150|Oscillatoriales
DescriptionScp-like extracellular
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1275Ggra1275Gracilaria gracilis GNS1m malegenetig00000235_pilon 2481..2993 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1275.t1.start1Ggra1275.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 2481..2483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1275.t1.CDS1Ggra1275.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 2481..2993 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1275.t1.exon1Ggra1275.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 2481..2993 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1275.t1.stop1Ggra1275.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 2991..2993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1275.t1Ggra1275.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 2481..2993 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1275.t1 ID=Ggra1275.t1|Name=Ggra1275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=171bp
MQPKPQVLAARQAGCRTCAPNQLTHVRLPRQAGALQDMYRRRLLRLTNEQ
RARYGISPVRLDSKLNVAASKHNADLAFKQIRLSHIGFDGARLGVRVRRV
GYSFVWAAENLARGQKNPMHAVSSWMKSPGHRRNLLNAKATHMGVHVGRG
RNGQLYWAQVFGRPTPIVRS*
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spliced messenger RNA

>Ggra1275.t1 ID=Ggra1275.t1|Name=Ggra1275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00000235_pilon:2481..2993+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCAAGCCTCAGGTGTTAGCCGCGAGGCAGGCAGGCTGCAGAAC
ATGTGCACCGAATCAACTCACGCACGTCAGACTTCCGCGACAGGCAGGCG
CTCTGCAAGACATGTACCGTCGACGACTGCTACGTCTCACGAACGAACAA
CGCGCCAGATATGGCATATCGCCGGTTCGTCTTGACTCCAAGCTCAACGT
GGCCGCTTCCAAACATAACGCCGATCTGGCGTTTAAGCAGATTCGTTTGA
GTCATATTGGATTCGATGGTGCTAGACTGGGTGTTCGTGTGCGTCGCGTT
GGCTACAGCTTTGTTTGGGCGGCGGAGAACTTGGCGCGTGGCCAGAAGAA
CCCCATGCATGCGGTAAGCAGTTGGATGAAAAGCCCTGGACATCGTCGAA
ATCTGCTCAACGCTAAGGCTACGCACATGGGGGTGCATGTAGGACGCGGT
CGTAATGGTCAACTTTATTGGGCGCAGGTGTTTGGAAGACCCACACCCAT
AGTAAGAAGCTGA
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protein sequence of Ggra1275.t1

>Ggra1275.t1 ID=Ggra1275.t1|Name=Ggra1275.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=171bp
MQPKPQVLAARQAGCRTCAPNQLTHVRLPRQAGALQDMYRRRLLRLTNEQ
RARYGISPVRLDSKLNVAASKHNADLAFKQIRLSHIGFDGARLGVRVRRV
GYSFVWAAENLARGQKNPMHAVSSWMKSPGHRRNLLNAKATHMGVHVGRG
RNGQLYWAQVFGRPTPIVRS*
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mRNA from alignment at tig00000235_pilon:2481..2993+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1275.t1 ID=Ggra1275.t1|Name=Ggra1275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00000235_pilon:2481..2993+ (Gracilaria gracilis GNS1m male)
ATGCAGCCCAAGCCTCAGGTGTTAGCCGCGAGGCAGGCAGGCTGCAGAAC
ATGTGCACCGAATCAACTCACGCACGTCAGACTTCCGCGACAGGCAGGCG
CTCTGCAAGACATGTACCGTCGACGACTGCTACGTCTCACGAACGAACAA
CGCGCCAGATATGGCATATCGCCGGTTCGTCTTGACTCCAAGCTCAACGT
GGCCGCTTCCAAACATAACGCCGATCTGGCGTTTAAGCAGATTCGTTTGA
GTCATATTGGATTCGATGGTGCTAGACTGGGTGTTCGTGTGCGTCGCGTT
GGCTACAGCTTTGTTTGGGCGGCGGAGAACTTGGCGCGTGGCCAGAAGAA
CCCCATGCATGCGGTAAGCAGTTGGATGAAAAGCCCTGGACATCGTCGAA
ATCTGCTCAACGCTAAGGCTACGCACATGGGGGTGCATGTAGGACGCGGT
CGTAATGGTCAACTTTATTGGGCGCAGGTGTTTGGAAGACCCACACCCAT
AGTAAGAAGCTGA
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Coding sequence (CDS) from alignment at tig00000235_pilon:2481..2993+

>Ggra1275.t1 ID=Ggra1275.t1|Name=Ggra1275.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=513bp|location=Sequence derived from alignment at tig00000235_pilon:2481..2993+ (Gracilaria gracilis GNS1m male)
ATGCAGCCCAAGCCTCAGGTGTTAGCCGCGAGGCAGGCAGGCTGCAGAAC
ATGTGCACCGAATCAACTCACGCACGTCAGACTTCCGCGACAGGCAGGCG
CTCTGCAAGACATGTACCGTCGACGACTGCTACGTCTCACGAACGAACAA
CGCGCCAGATATGGCATATCGCCGGTTCGTCTTGACTCCAAGCTCAACGT
GGCCGCTTCCAAACATAACGCCGATCTGGCGTTTAAGCAGATTCGTTTGA
GTCATATTGGATTCGATGGTGCTAGACTGGGTGTTCGTGTGCGTCGCGTT
GGCTACAGCTTTGTTTGGGCGGCGGAGAACTTGGCGCGTGGCCAGAAGAA
CCCCATGCATGCGGTAAGCAGTTGGATGAAAAGCCCTGGACATCGTCGAA
ATCTGCTCAACGCTAAGGCTACGCACATGGGGGTGCATGTAGGACGCGGT
CGTAATGGTCAACTTTATTGGGCGCAGGTGTTTGGAAGACCCACACCCAT
AGTAAGAAGCTGA
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