Ggra1263.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1263.t1
Unique Name	Ggra1263.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	492

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000208_pilon	contig	tig00000208_pilon:68678..71356 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1263	Ggra1263	Gracilaria gracilis GNS1m male	gene	tig00000208_pilon 68678..71356 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1263.t1	Ggra1263.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000208_pilon 68678..71356 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1263.t1.start1	Ggra1263.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000208_pilon 68678..68680 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1263.t1.CDS1	Ggra1263.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000208_pilon 68678..69345 +
Ggra1263.t1.CDS2	Ggra1263.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000208_pilon 70549..71356 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1263.t1.exon1	Ggra1263.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000208_pilon 68678..69345 +
Ggra1263.t1.exon2	Ggra1263.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000208_pilon 70549..71356 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1263.t1.intron1	Ggra1263.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000208_pilon 69346..70548 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1263.t1.stop1	Ggra1263.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000208_pilon 71354..71356 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000208_pilon:68678..71356+
coding sequence from alignment at tig00000208_pilon:68678..71356+

mRNA sequence

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp
MAHRTPSKTRSLQIDTSPPSPSGESVSLKRLSSDQTDLYEDTVETPLSLP
GLNENSDEHGHQNAKDDVQNDSTLAQTAHNGSKSPSHSQISNNSADQNMS
FSFDSEGEETDSVYNPQNKEGNNEENDSSYSQSKISDQNQTVSEVELRQL
VMDNFMNYPEAGVTTSNSINARQVTVEDMWSSLFCEDYSLDSLHSAEKTD
NEAQREADEARASVDGLDDWEYASVSENGTESNLSAGGTGKSIASMKVMQ
ILSQVQEVTLLQSEDPGWFLARGFRYTSRTTQSFLRTLSENHEDNIEALA
FLIKEKQIDYRLVTFPQGEEELKQCLMSKLIIFSRSMNMQLSCHHTLDEQ
EHAISSLMSSTAESLQAKTKNEILSILSAVGCRQPQSLLKRQLIEKTLEL
KCSVQNGTVQLALPSMQSMSAAQRVEVKKEKLLEALYKTSLTSWVMKPLV
STPGMKEGNVNESQVLKALPLFFEKSSVVDGDCLRSRQLSY*

spliced messenger RNA

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00000208_pilon:68678..71356+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCACAGGACGCCATCAAAAACGCGAAGTCTGCAGATTGACACATC
CCCACCGTCCCCAAGTGGTGAAAGTGTTTCGCTCAAGCGGCTCTCGAGCG
ACCAAACCGATCTGTATGAAGACACCGTAGAAACACCACTTTCTCTACCG
GGTTTGAACGAGAATTCTGATGAGCACGGTCATCAGAACGCAAAAGATGA
TGTTCAAAATGACTCAACTCTTGCACAGACAGCTCACAATGGCAGCAAAT
CTCCCTCACATTCCCAAATCAGCAACAATAGTGCTGACCAAAACATGAGC
TTTTCGTTTGACTCAGAGGGGGAAGAAACAGATTCTGTTTACAATCCTCA
GAACAAAGAAGGCAACAATGAAGAAAATGATTCCTCATACAGTCAGTCTA
AAATCAGCGATCAGAACCAAACTGTCTCAGAAGTGGAGCTCCGTCAACTC
GTAATGGATAACTTTATGAACTATCCAGAAGCTGGCGTAACTACGTCGAA
TTCTATTAATGCAAGACAAGTGACGGTGGAAGATATGTGGTCGTCACTCT
TTTGTGAAGATTACAGCCTTGATTCGCTGCATTCTGCAGAGAAGACTGAC
AATGAAGCTCAACGGGAGGCCGATGAAGCTCGTGCATCCgtggatggact
tgacgactgggaatatgcTTCTGTGTCAGAAAACGGCACAGAAAGCAATC
TTTCAGCTGGTGGTACCGGGAAATCAATTGCTAGTATGAAAGTCATGCAG
ATTCTCTCGCAAGTACAAGAAGTTACATTGCTACAGTCTGAGGATCCGGG
ATGGTTCCTCGCACGAGGATTTCGGTACACATCGCGAACCACGCAATCTT
TTCTTCGCACTTTGTCGGAGAACCATGAAGATAATATTGAGGCTCTTGCT
TTCCTAATTAAGGAAAAACAAATCGATTATCGCCTTGTAACATTTCCTCA
GGGAGAAGAAGAATTGAAACAGTGCTTAATGTCGAAGCTAATTATCTTCA
GTCGTTCGATGAATATGCAATTAAGCTGCCACCATACGTTAGACGAACAA
GAACATGCAATTTCTTCTCTCATGTCTAGTACTGCGGAGAGTTTACAAGC
GAAGACCAAGAACGAAATTCTCTCTATTTTGAGTGCTGTTGGATGTAGAC
AGCCTCAATCGCTTCTGAAACGACAGCTGATCGAGAAGACATTGGAACTT
AAATGTTCTGTGCAAAATGGTACGGTGCAGTTGGCATTACCATCCATGCA
GAGCATGTCAGCCGCTCAAAGAGTCGAAGTCAAAAAGGAAAAGCTTTTGG
AGGCCTTGTACAAAACCTCACTTACTTCTTGGGTCATGAAGCCCCTCGTG
AGTACACCCGGAATGAAAGAAGGGAACGTGAATGAGTCTCAGGTTTTAAA
GGCGTTGCCTTTGTTTTTCGAGAAGAGCAGTGTGGTTGATGGGGACTGTC
TTAGATCCAGACAACTATCTTATTGA

protein sequence of Ggra1263.t1

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=492bp
MAHRTPSKTRSLQIDTSPPSPSGESVSLKRLSSDQTDLYEDTVETPLSLP
GLNENSDEHGHQNAKDDVQNDSTLAQTAHNGSKSPSHSQISNNSADQNMS
FSFDSEGEETDSVYNPQNKEGNNEENDSSYSQSKISDQNQTVSEVELRQL
VMDNFMNYPEAGVTTSNSINARQVTVEDMWSSLFCEDYSLDSLHSAEKTD
NEAQREADEARASVDGLDDWEYASVSENGTESNLSAGGTGKSIASMKVMQ
ILSQVQEVTLLQSEDPGWFLARGFRYTSRTTQSFLRTLSENHEDNIEALA
FLIKEKQIDYRLVTFPQGEEELKQCLMSKLIIFSRSMNMQLSCHHTLDEQ
EHAISSLMSSTAESLQAKTKNEILSILSAVGCRQPQSLLKRQLIEKTLEL
KCSVQNGTVQLALPSMQSMSAAQRVEVKKEKLLEALYKTSLTSWVMKPLV
STPGMKEGNVNESQVLKALPLFFEKSSVVDGDCLRSRQLSY*

mRNA from alignment at tig00000208_pilon:68678..71356+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2679bp|location=Sequence derived from alignment at tig00000208_pilon:68678..71356+ (Gracilaria gracilis GNS1m male)
ATGGCGCACAGGACGCCATCAAAAACGCGAAGTCTGCAGATTGACACATC
CCCACCGTCCCCAAGTGGTGAAAGTGTTTCGCTCAAGCGGCTCTCGAGCG
ACCAAACCGATCTGTATGAAGACACCGTAGAAACACCACTTTCTCTACCG
GGTTTGAACGAGAATTCTGATGAGCACGGTCATCAGAACGCAAAAGATGA
TGTTCAAAATGACTCAACTCTTGCACAGACAGCTCACAATGGCAGCAAAT
CTCCCTCACATTCCCAAATCAGCAACAATAGTGCTGACCAAAACATGAGC
TTTTCGTTTGACTCAGAGGGGGAAGAAACAGATTCTGTTTACAATCCTCA
GAACAAAGAAGGCAACAATGAAGAAAATGATTCCTCATACAGTCAGTCTA
AAATCAGCGATCAGAACCAAACTGTCTCAGAAGTGGAGCTCCGTCAACTC
GTAATGGATAACTTTATGAACTATCCAGAAGCTGGCGTAACTACGTCGAA
TTCTATTAATGCAAGACAAGTGACGGTGGAAGATATGTGGTCGTCACTCT
TTTGTGAAGATTACAGCCTTGATTCGCTGCATTCTGCAGAGAAGACTGAC
AATGAAGCTCAACGGGAGGCCGATGAAGCTCGTGCATCCgtggatggact
tgacgactgggaatatgcgtcaccatttcaatcgctaacgattgacattg
atggcataaaccgagatctaggaaaacgttttttgtccgaagctaatcat
atattacaacaggtcaccaaagaagctcaagaaaaacatgtggtggaagg
ggtcctctctatgaacaacatgaccagactgaatgtcttggacgtgtttt
tgcctgagcatgtgcttctcaaagtggtttcaaatgttaatcgcgtactt
aaattcaaaaagcagaagcccaccactccctttgagttcaaaggtgttct
tatactacacgttttagcggcatcatatagttccacagtgagtacaataa
ctgcaaagcgaaacaaagagtttttctttcaaatgggaatttcgtgtgct
agatactccgaagtgtggtgttcgctgtcgtgtacagtaggaagaaggca
aagatttgagagcctaggagagggatggtcgaacttccctcaaagagcca
acccattgatcacagaattggaagatgaactcgcggccgtgaacagactg
cttttgtacgtaccgggtgtgacaatttttagtcttgacgacgaccatca
gaggcttcgatcgagagcagttgcgcaattaacgatgatgtctcatgtta
acaatccacataaagctcttggaccagttaataatgcgatgtgttctgcg
ctaaatccagtgtttttagcttctcactattcacgtccgtgcgaaaggat
catagatgtcttggagcgattggtccgcctgatacaaggtgtgccaactg
cagggcctgtacgccctatgacagacgctatatttgcctctgacagaggc
tataactcaaaagagtcagtagactacatcacagatcgagttggagcaac
tggaatcggaacgtataagcgtagtctgaattatccatttgtttttggag
aaggttcgattcggaagaagcataaggggatggtggtgagtgagagaaga
tgcagggcagtatatggtgcacgaaggaaagcaaagtccttaactggacg
aactgtagaagccgttgtgtatcgcgagagctgtagtggccgtatcgctg
ctatgtatcataataacgataacttgttttccgctacacactttaaactc
atagccaagacgggatacaagcaggtaaggacacagcgtgagagagagct
ttttcatttggtctttgatAGTTCTGTGTCAGAAAACGGCACAGAAAGCA
ATCTTTCAGCTGGTGGTACCGGGAAATCAATTGCTAGTATGAAAGTCATG
CAGATTCTCTCGCAAGTACAAGAAGTTACATTGCTACAGTCTGAGGATCC
GGGATGGTTCCTCGCACGAGGATTTCGGTACACATCGCGAACCACGCAAT
CTTTTCTTCGCACTTTGTCGGAGAACCATGAAGATAATATTGAGGCTCTT
GCTTTCCTAATTAAGGAAAAACAAATCGATTATCGCCTTGTAACATTTCC
TCAGGGAGAAGAAGAATTGAAACAGTGCTTAATGTCGAAGCTAATTATCT
TCAGTCGTTCGATGAATATGCAATTAAGCTGCCACCATACGTTAGACGAA
CAAGAACATGCAATTTCTTCTCTCATGTCTAGTACTGCGGAGAGTTTACA
AGCGAAGACCAAGAACGAAATTCTCTCTATTTTGAGTGCTGTTGGATGTA
GACAGCCTCAATCGCTTCTGAAACGACAGCTGATCGAGAAGACATTGGAA
CTTAAATGTTCTGTGCAAAATGGTACGGTGCAGTTGGCATTACCATCCAT
GCAGAGCATGTCAGCCGCTCAAAGAGTCGAAGTCAAAAAGGAAAAGCTTT
TGGAGGCCTTGTACAAAACCTCACTTACTTCTTGGGTCATGAAGCCCCTC
GTGAGTACACCCGGAATGAAAGAAGGGAACGTGAATGAGTCTCAGGTTTT
AAAGGCGTTGCCTTTGTTTTTCGAGAAGAGCAGTGTGGTTGATGGGGACT
GTCTTAGATCCAGACAACTATCTTATTGA

Coding sequence (CDS) from alignment at tig00000208_pilon:68678..71356+

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00000208_pilon:68678..71356+ (Gracilaria gracilis GNS1m male)
ATGGCGCACAGGACGCCATCAAAAACGCGAAGTCTGCAGATTGACACATC
CCCACCGTCCCCAAGTGGTGAAAGTGTTTCGCTCAAGCGGCTCTCGAGCG
ACCAAACCGATCTGTATGAAGACACCGTAGAAACACCACTTTCTCTACCG
GGTTTGAACGAGAATTCTGATGAGCACGGTCATCAGAACGCAAAAGATGA
TGTTCAAAATGACTCAACTCTTGCACAGACAGCTCACAATGGCAGCAAAT
CTCCCTCACATTCCCAAATCAGCAACAATAGTGCTGACCAAAACATGAGC
TTTTCGTTTGACTCAGAGGGGGAAGAAACAGATTCTGTTTACAATCCTCA
GAACAAAGAAGGCAACAATGAAGAAAATGATTCCTCATACAGTCAGTCTA
AAATCAGCGATCAGAACCAAACTGTCTCAGAAGTGGAGCTCCGTCAACTC
GTAATGGATAACTTTATGAACTATCCAGAAGCTGGCGTAACTACGTCGAA
TTCTATTAATGCAAGACAAGTGACGGTGGAAGATATGTGGTCGTCACTCT
TTTGTGAAGATTACAGCCTTGATTCGCTGCATTCTGCAGAGAAGACTGAC
AATGAAGCTCAACGGGAGGCCGATGAAGCTCGTGCATCCgtggatggact
tgacgactgggaatatgcTTCTGTGTCAGAAAACGGCACAGAAAGCAATC
TTTCAGCTGGTGGTACCGGGAAATCAATTGCTAGTATGAAAGTCATGCAG
ATTCTCTCGCAAGTACAAGAAGTTACATTGCTACAGTCTGAGGATCCGGG
ATGGTTCCTCGCACGAGGATTTCGGTACACATCGCGAACCACGCAATCTT
TTCTTCGCACTTTGTCGGAGAACCATGAAGATAATATTGAGGCTCTTGCT
TTCCTAATTAAGGAAAAACAAATCGATTATCGCCTTGTAACATTTCCTCA
GGGAGAAGAAGAATTGAAACAGTGCTTAATGTCGAAGCTAATTATCTTCA
GTCGTTCGATGAATATGCAATTAAGCTGCCACCATACGTTAGACGAACAA
GAACATGCAATTTCTTCTCTCATGTCTAGTACTGCGGAGAGTTTACAAGC
GAAGACCAAGAACGAAATTCTCTCTATTTTGAGTGCTGTTGGATGTAGAC
AGCCTCAATCGCTTCTGAAACGACAGCTGATCGAGAAGACATTGGAACTT
AAATGTTCTGTGCAAAATGGTACGGTGCAGTTGGCATTACCATCCATGCA
GAGCATGTCAGCCGCTCAAAGAGTCGAAGTCAAAAAGGAAAAGCTTTTGG
AGGCCTTGTACAAAACCTCACTTACTTCTTGGGTCATGAAGCCCCTCGTG
AGTACACCCGGAATGAAAGAAGGGAACGTGAATGAGTCTCAGGTTTTAAA
GGCGTTGCCTTTGTTTTTCGAGAAGAGCAGTGTGGTTGATGGGGACTGTC
TTAGATCCAGACAACTATCTTATTGA