Ggra1262.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1262.t1
Unique NameGgra1262.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000208_piloncontigtig00000208_pilon:63016..64201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1262Ggra1262Gracilaria gracilis GNS1m malegenetig00000208_pilon 63016..64201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1262.t1Ggra1262.t1Gracilaria gracilis GNS1m malepolypeptidetig00000208_pilon 63016..64201 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1262.t1.stop1Ggra1262.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000208_pilon 63016..63018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1262.t1.CDS1Ggra1262.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000208_pilon 63016..63569 -
Ggra1262.t1.CDS2Ggra1262.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000208_pilon 63662..63933 -
Ggra1262.t1.CDS3Ggra1262.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000208_pilon 64044..64201 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1262.t1.exon1Ggra1262.t1.exon1Gracilaria gracilis GNS1m maleexontig00000208_pilon 63016..63569 -
Ggra1262.t1.exon2Ggra1262.t1.exon2Gracilaria gracilis GNS1m maleexontig00000208_pilon 63662..63933 -
Ggra1262.t1.exon3Ggra1262.t1.exon3Gracilaria gracilis GNS1m maleexontig00000208_pilon 64044..64201 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1262.t1.intron1Ggra1262.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000208_pilon 63570..63661 -
Ggra1262.t1.intron2Ggra1262.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000208_pilon 63934..64043 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1262.t1.start1Ggra1262.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000208_pilon 64199..64201 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1262.t1 ID=Ggra1262.t1|Name=Ggra1262.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=328bp
MPSVLLKGHHLPKSHLTALDFAQQLLLDEYAVSEATSRRFNDMEANETYL
RDRAALESSGAPLNVGFTDDELDHFGTPTHHSTFGAKAKPIKERFSLRNS
YHRNNQNGKSRPRAIRKVSHFLSYSIMAPQIIGDVNRVTDNWMTMAGEAM
RRAFLYGCTELLFGQRDIPRRLKSILCYVLSSGKERHRIETDHTKSFERQ
GFDNGRSITSVYKRRPYDALSIMSGHAAYLACIYVSCAAGFVAARYVSRV
HTAMERYQNRSDLDIHTRLVDFPLPRRDSDAILLAHTLLQESFLSLSQSF
CPLKPVLALEETPTKLAERAGEHFREC*
back to top

spliced messenger RNA

>Ggra1262.t1 ID=Ggra1262.t1|Name=Ggra1262.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000208_pilon:63016..64201- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCTGTCTTGTTGAAGGGTCATCATCTGCCCAAATCGCACCTGAC
CGCGCTGGACTTTGCACAACAGCTTCTGTTGGACGAGTACGCTGTGTCAG
AAGCGACCAGTAGGCGTTTTAACGATATGGAGGCCAACGAGACATATTTG
CGTGATCGGGCTGCCTTGGAATCGAGCGGCGCCCCGTTGAACGTCGGCTT
TACGGATGATGAGCTAGATCACTTTGGCACCCCGACTCATCATTCCACGT
TTGGGGCAAAGGCAAAGCCCATCAAGGAGCGATTTAGCCTTCGTAACAGC
TACCATCGCAACAATCAAAATGGAAAGAGTCGTCCACGCGCCATTCGCAA
GGTGTCACATTTTCTGTCCTACTCTATCATGGCTCCCCAGATCATAGGCG
ACGTGAACCGCGTGACCGACAACTGGATGACAATGGCGGGAGAGGCCATG
AGACGCGCCTTCCTGTACGGGTGTACGGAGCTTCTGTTCGGTCAAAGAGA
TATTCCGAGACGGCTCAAGTCCATTCTGTGCTACGTTCTGTCATCTGGCA
AGGAGCGCCACAGAATAGAAACCGATCATACTAAGAGCTTTGAAAGACAG
GGATTTGACAATGGTCGTTCAATTACTTCTGTATACAAGCGAAGACCATA
TGACGCCCTGAGCATCATGTCTGGGCATGCTGCGTATCTCGCGTGCATAT
ATGTTTCATGCGCTGCGGGATTTGTTGCCGCTAGATACGTTAGTCGCGTG
CATACCGCAATGGAGAGGTATCAAAATCGATCCGACCTTGACATACATAC
TCGCCTTGTTGACTTTCCGCTCCCAAGAAGAGATTCTGATGCAATTTTGC
TCGCCCATACGCTGCTACAGGAATCGTTTTTATCTCTGAGCCAGAGCTTT
TGCCCTCTGAAGCCAGTTTTGGCTCTAGAAGAGACACCCACCAAGCTAGC
AGAAAGAGCCGGAGAGCATTTTCGGGAGTGCTAA
back to top

protein sequence of Ggra1262.t1

>Ggra1262.t1 ID=Ggra1262.t1|Name=Ggra1262.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=328bp
MPSVLLKGHHLPKSHLTALDFAQQLLLDEYAVSEATSRRFNDMEANETYL
RDRAALESSGAPLNVGFTDDELDHFGTPTHHSTFGAKAKPIKERFSLRNS
YHRNNQNGKSRPRAIRKVSHFLSYSIMAPQIIGDVNRVTDNWMTMAGEAM
RRAFLYGCTELLFGQRDIPRRLKSILCYVLSSGKERHRIETDHTKSFERQ
GFDNGRSITSVYKRRPYDALSIMSGHAAYLACIYVSCAAGFVAARYVSRV
HTAMERYQNRSDLDIHTRLVDFPLPRRDSDAILLAHTLLQESFLSLSQSF
CPLKPVLALEETPTKLAERAGEHFREC*
back to top

mRNA from alignment at tig00000208_pilon:63016..64201-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1262.t1 ID=Ggra1262.t1|Name=Ggra1262.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1186bp|location=Sequence derived from alignment at tig00000208_pilon:63016..64201- (Gracilaria gracilis GNS1m male)
ATGCCTTCTGTCTTGTTGAAGGGTCATCATCTGCCCAAATCGCACCTGAC
CGCGCTGGACTTTGCACAACAGCTTCTGTTGGACGAGTACGCTGTGTCAG
AAGCGACCAGTAGGCGTTTTAACGATATGGAGGCCAACGAGACATATTTG
CGTGATCGGTACGTGTCTGCCACATGTGCATGCGGTGCCTTTCTCTCCAG
TCTGACCAACACGCTGTACCTCGGGCTGACCCAGGCTGCCATTCAGTACG
ACTCCACCGACCTATAAGGGCTGCCTTGGAATCGAGCGGCGCCCCGTTGA
ACGTCGGCTTTACGGATGATGAGCTAGATCACTTTGGCACCCCGACTCAT
CATTCCACGTTTGGGGCAAAGGCAAAGCCCATCAAGGAGCGATTTAGCCT
TCGTAACAGCTACCATCGCAACAATCAAAATGGAAAGAGTCGTCCACGCG
CCATTCGCAAGGTGTCACATTTTCTGTCCTACTCTATCATGGCTCCCCAG
ATCATAGGCGACGTGAACCGCGTGACCGACAACTGGATGAGTAATGCTCA
TTTACCAGCGGCAGTCAACCTGTTTGAGGCCAACGACTTCATTATTCATA
CCTTGGGGAGCCCTTTTATTTCTCGACGCGAGCAATGGCGGGAGAGGCCA
TGAGACGCGCCTTCCTGTACGGGTGTACGGAGCTTCTGTTCGGTCAAAGA
GATATTCCGAGACGGCTCAAGTCCATTCTGTGCTACGTTCTGTCATCTGG
CAAGGAGCGCCACAGAATAGAAACCGATCATACTAAGAGCTTTGAAAGAC
AGGGATTTGACAATGGTCGTTCAATTACTTCTGTATACAAGCGAAGACCA
TATGACGCCCTGAGCATCATGTCTGGGCATGCTGCGTATCTCGCGTGCAT
ATATGTTTCATGCGCTGCGGGATTTGTTGCCGCTAGATACGTTAGTCGCG
TGCATACCGCAATGGAGAGGTATCAAAATCGATCCGACCTTGACATACAT
ACTCGCCTTGTTGACTTTCCGCTCCCAAGAAGAGATTCTGATGCAATTTT
GCTCGCCCATACGCTGCTACAGGAATCGTTTTTATCTCTGAGCCAGAGCT
TTTGCCCTCTGAAGCCAGTTTTGGCTCTAGAAGAGACACCCACCAAGCTA
GCAGAAAGAGCCGGAGAGCATTTTCGGGAGTGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000208_pilon:63016..64201-

>Ggra1262.t1 ID=Ggra1262.t1|Name=Ggra1262.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00000208_pilon:63016..64201- (Gracilaria gracilis GNS1m male)
ATGCCTTCTGTCTTGTTGAAGGGTCATCATCTGCCCAAATCGCACCTGAC
CGCGCTGGACTTTGCACAACAGCTTCTGTTGGACGAGTACGCTGTGTCAG
AAGCGACCAGTAGGCGTTTTAACGATATGGAGGCCAACGAGACATATTTG
CGTGATCGGGCTGCCTTGGAATCGAGCGGCGCCCCGTTGAACGTCGGCTT
TACGGATGATGAGCTAGATCACTTTGGCACCCCGACTCATCATTCCACGT
TTGGGGCAAAGGCAAAGCCCATCAAGGAGCGATTTAGCCTTCGTAACAGC
TACCATCGCAACAATCAAAATGGAAAGAGTCGTCCACGCGCCATTCGCAA
GGTGTCACATTTTCTGTCCTACTCTATCATGGCTCCCCAGATCATAGGCG
ACGTGAACCGCGTGACCGACAACTGGATGACAATGGCGGGAGAGGCCATG
AGACGCGCCTTCCTGTACGGGTGTACGGAGCTTCTGTTCGGTCAAAGAGA
TATTCCGAGACGGCTCAAGTCCATTCTGTGCTACGTTCTGTCATCTGGCA
AGGAGCGCCACAGAATAGAAACCGATCATACTAAGAGCTTTGAAAGACAG
GGATTTGACAATGGTCGTTCAATTACTTCTGTATACAAGCGAAGACCATA
TGACGCCCTGAGCATCATGTCTGGGCATGCTGCGTATCTCGCGTGCATAT
ATGTTTCATGCGCTGCGGGATTTGTTGCCGCTAGATACGTTAGTCGCGTG
CATACCGCAATGGAGAGGTATCAAAATCGATCCGACCTTGACATACATAC
TCGCCTTGTTGACTTTCCGCTCCCAAGAAGAGATTCTGATGCAATTTTGC
TCGCCCATACGCTGCTACAGGAATCGTTTTTATCTCTGAGCCAGAGCTTT
TGCCCTCTGAAGCCAGTTTTGGCTCTAGAAGAGACACCCACCAAGCTAGC
AGAAAGAGCCGGAGAGCATTTTCGGGAGTGCTAA
back to top