Ggra1262.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra1262.t1
Unique Name	Ggra1262.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	328

Homology

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BLAST of Ggra1262.t1 vs. uniprot
Match: A0A2V3IZ98 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ98_9FLOR)

HSP 1 Score: 384 bits (987), Expect = 4.460e-125
Identity = 215/364 (59.07%), Postives = 248/364 (68.13%), Query Frame = 0

Query:    1 MPSVLLKGHHLPKSHLTALDFAQQLLLDEYAVSEATSRRFNDMEANETYLRDR-------------------------AALE------------SSGAPLNVGFTDDELDHFGTPTHHSTFGAKAKPIKERFSLRNSYHRNNQ---NGKSRPRAIRKVSHFLSYSIMAPQIIGDVNRVTDNWMT--------------------------------MAGEAMRRAFLYGCTELLFGQRDIPRRLKSILCYVLSSGKERHRIETDHTKSFERQGFDNGRSITSVYKRRPYDALSIMSGHAAYLACIYVSCAAGFVAARYVSRVHTAMERYQNRSDLDIHTRLVDFPLPRRDSDAILLAHTLLQES 292
            MPS+LL+G HL  S L ALDFAQQ+L D+YAVSE  SR   D++ +E  + DR                         AA++            SSGAP+NVGFTDDE+DHFGT T HSTFG+K +P ++RFSL N+YHR+ +   NGK+RP+AIRKVSHFLS SI+AP+II DVNRVT+NWM+                                MAGE+MRRAFLYGCTELLFG+RDIPRRLK I+CYVLSSGKER RI+ DHTKSFERQG  NGRSITSVY +RPYDALSIMS HAAYLAC Y SCAA  VAA  VSRV +AM+RYQ   D  IHTRLVDFPLPRRD  AILLAH+LLQES
Sbjct:  234 MPSMLLEGSHLSPSQLIALDFAQQMLSDDYAVSETVSRSIIDVQPSENTMLDRYVAATCAYGAFLSCLTSTLDLELTHAAIQYASNNLQGLPWKSSGAPVNVGFTDDEIDHFGTATTHSTFGSKYRPKRDRFSLHNNYHRHTRSPSNGKTRPKAIRKVSHFLSCSILAPKIIADVNRVTENWMSNAHLPPPGQLFDANDFIAHIFGFEPFYFSTLAMAGESMRRAFLYGCTELLFGERDIPRRLKFIICYVLSSGKERRRIDRDHTKSFERQGVHNGRSITSVYSQRPYDALSIMSAHAAYLACKYGSCAAELVAASDVSRVRSAMDRYQVHPDASIHTRLVDFPLPRRDCAAILLAHSLLQES 597

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BLAST of Ggra1262.t1 vs. uniprot
Match: R7QVB8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QVB8_CHOCR)

HSP 1 Score: 245 bits (625), Expect = 3.150e-72
Identity = 151/361 (41.83%), Postives = 205/361 (56.79%), Query Frame = 0

Query:    1 MPSVLLKGHHLPKSHLTALDFAQQLLLDEYAVSEATSRRFNDMEANE------------TYLRDRAAL-------------------------ESSGAPLNVGFTDDELDHFGTPTHHSTFGAKAKPIKERFSLRNSYHRNNQN-GKSRPRAIRKVSHFLSYSIMAPQIIGDVNRVTDNWMTMAG--------------------------------EAMRRAFLYGCTELLFGQRDIPRRLKSILCYVLSSGKERHRI-ETDHTKSFERQGFDNGRSITSVYKRRPYDALSIMSGHAAYLACIYVSCAAGFVAARYVSRVHTAMERYQNRSDLDIHTRLVDFPLPRRDSDAILLAHTLLQ 290
            +P+++L+G HL    + ALDFAQ+L      VSE+T RR  + +A              +Y    A L                         +SSGAP+NVGF DDE+  FG  T  S F +K +P +ER SL   Y R++++  +SR R IR+VS F + SIM P+ + DVNR+T++WM  AG                                E++RRAFL+G  ELLF ++++PRRLK +LCYVLSSGKER RI +++H+KSF++QG  NG SITSVY +R YD+LSIMS HAA+LAC Y +  A  VAA   SRV +AMERY      +  +R + FPL RRD  AIL+ H+L+Q
Sbjct:  147 LPAIVLEGRHLTDKEIAALDFAQELSGANAVVSESTRRRVINGDAESDGRLERLVSSASSYAAFLACLTSTVDMALPHGSITYATKNLDCLPWKSSGAPVNVGFLDDEMGDFGLSTAPSGFSSKYRPKRERLSLNRHYDRHHRDRSRSRHRGIRRVSQFFAASIMGPKTVTDVNRITESWMKTAGVPPSGRLFDINDEICSLFGFHPFYFSTAAMERESVRRAFLFGAKELLFSEKEVPRRLKFLLCYVLSSGKERQRIVDSEHSKSFQKQGVHNGHSITSVYSQRQYDSLSIMSAHAAFLACKYGASPAELVAASDASRVRSAMERYDLDPAKNWSSRTIGFPLVRRDCAAILIVHSLMQ 507

The following BLAST results are available for this feature:

BLAST of Ggra1262.t1 vs. uniprot

BLAST of Ggra1262.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IZ98	4.460e-125	59.07	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QVB8	3.150e-72	41.83	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..226
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 248..327
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 227..247
None	No IPR available	TMHMM	TMhelix		coord: 222..244

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000208_pilon	contig	tig00000208_pilon:63016..64201 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1262.t1	Ggra1262.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000208_pilon 63016..64201 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra1262.t1 ID=Ggra1262.t1|Name=Ggra1262.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=328bp
MPSVLLKGHHLPKSHLTALDFAQQLLLDEYAVSEATSRRFNDMEANETYL
RDRAALESSGAPLNVGFTDDELDHFGTPTHHSTFGAKAKPIKERFSLRNS
YHRNNQNGKSRPRAIRKVSHFLSYSIMAPQIIGDVNRVTDNWMTMAGEAM
RRAFLYGCTELLFGQRDIPRRLKSILCYVLSSGKERHRIETDHTKSFERQ
GFDNGRSITSVYKRRPYDALSIMSGHAAYLACIYVSCAAGFVAARYVSRV
HTAMERYQNRSDLDIHTRLVDFPLPRRDSDAILLAHTLLQESFLSLSQSF
CPLKPVLALEETPTKLAERAGEHFREC*