Ggra1258.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1258.t1
Unique NameGgra1258.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000208_piloncontigtig00000208_pilon:42239..43204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1258Ggra1258Gracilaria gracilis GNS1m malegenetig00000208_pilon 42239..43204 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1258.t1.stop1Ggra1258.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000208_pilon 42239..42241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1258.t1.CDS1Ggra1258.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000208_pilon 42239..43204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1258.t1.exon1Ggra1258.t1.exon1Gracilaria gracilis GNS1m maleexontig00000208_pilon 42239..43204 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1258.t1.start1Ggra1258.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000208_pilon 43202..43204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1258.t1Ggra1258.t1Gracilaria gracilis GNS1m malepolypeptidetig00000208_pilon 42239..43204 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1258.t1 ID=Ggra1258.t1|Name=Ggra1258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=322bp
MSVIVSQSSVCPRRPARPRPHRRVSIATYATTPTPETQNLKQQLEAILDA
IPTFLDTATGRVERAVASIPDQVKYLFSDEGPLGVLNFWRENKDNISSTG
QQLLESGERLVKGDTDGFREKASGINLSWLRPLRRSSPSEGADDDVIVGS
QVRKTLFFLIDSLTPWDFDRHDFGLTFVTIWNDVEALKQADVNVATLKMT
STIKPIEQEWKLSARGKLFDLGENTAVFGKAGLYLAGDSPAYIGAEADRV
WPIPRLPGTKLFANVNYRSSRKPQKDPIKMTCGIEQDFAIAKGVDLTLRL
AFNIIENMGISIYPVPNGSYF*
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spliced messenger RNA

>Ggra1258.t1 ID=Ggra1258.t1|Name=Ggra1258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000208_pilon:42239..43204- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTAATAGTGAGCCAATCGTCTGTATGTCCGCGTCGGCCTGCTCG
GCCCCGCCCTCACCGTCGAGTTTCTATCGCGACGTATGCCACTACGCCAA
CACCCGAGACACAGAATCTCAAGCAGCAACTGGAAGCCATTCTTGATGCT
ATACCGACGTTCCTGGACACCGCAACTGGACGAGTTGAGAGAGCGGTGGC
CTCTATTCCGGATCAAGTTAAGTACCTGTTTTCCGACGAAGGTCCGCTTG
GAGTGTTGAACTTCTGGAGGGAAAACAAGGACAATATCTCAAGCACCGGG
CAACAGCTTCTCGAATCCGGTGAGCGTCTTGTAAAGGGCGACACTGACGG
TTTTCGTGAGAAAGCGTCAGGAATCAACTTGTCATGGTTGAGGCCTCTCC
GCAGATCAAGTCCCTCGGAAGGTGCCGATGATGATGTTATTGTTGGTAGT
CAAGTGCGAAAAACGCTTTTTTTCCTCATCGATTCGCTTACGCCTTGGGA
CTTTGACCGCCATGACTTTGGTCTAACGTTTGTAACTATATGGAATGATG
TGGAGGCTCTGAAACAGGCCGACGTTAACGTCGCCACGCTGAAAATGACG
TCCACCATAAAGCCCATTGAGCAGGAATGGAAGTTGAGTGCTCGGGGGAA
GCTATTTGATCTTGGGGAGAACACGGCCGTGTTTGGTAAAGCAGGCTTGT
ATCTGGCGGGTGACAGTCCAGCGTATATTGGTGCGGAGGCGGATCGTGTA
TGGCCTATCCCAAGACTTCCTGGGACGAAGTTATTCGCAAATGTGAACTA
CCGCAGCTCCAGAAAACCGCAGAAAGATCCCATAAAGATGACATGTGGTA
TTGAGCAAGATTTCGCGATTGCGAAGGGAGTCGACCTCACACTAAGGCTC
GCGTTTAACATCATCGAAAACATGGGTATCAGCATCTATCCCGTTCCAAA
CGGAAGTTACTTCTGA
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protein sequence of Ggra1258.t1

>Ggra1258.t1 ID=Ggra1258.t1|Name=Ggra1258.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=322bp
MSVIVSQSSVCPRRPARPRPHRRVSIATYATTPTPETQNLKQQLEAILDA
IPTFLDTATGRVERAVASIPDQVKYLFSDEGPLGVLNFWRENKDNISSTG
QQLLESGERLVKGDTDGFREKASGINLSWLRPLRRSSPSEGADDDVIVGS
QVRKTLFFLIDSLTPWDFDRHDFGLTFVTIWNDVEALKQADVNVATLKMT
STIKPIEQEWKLSARGKLFDLGENTAVFGKAGLYLAGDSPAYIGAEADRV
WPIPRLPGTKLFANVNYRSSRKPQKDPIKMTCGIEQDFAIAKGVDLTLRL
AFNIIENMGISIYPVPNGSYF*
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mRNA from alignment at tig00000208_pilon:42239..43204-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1258.t1 ID=Ggra1258.t1|Name=Ggra1258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000208_pilon:42239..43204- (Gracilaria gracilis GNS1m male)
ATGTCTGTAATAGTGAGCCAATCGTCTGTATGTCCGCGTCGGCCTGCTCG
GCCCCGCCCTCACCGTCGAGTTTCTATCGCGACGTATGCCACTACGCCAA
CACCCGAGACACAGAATCTCAAGCAGCAACTGGAAGCCATTCTTGATGCT
ATACCGACGTTCCTGGACACCGCAACTGGACGAGTTGAGAGAGCGGTGGC
CTCTATTCCGGATCAAGTTAAGTACCTGTTTTCCGACGAAGGTCCGCTTG
GAGTGTTGAACTTCTGGAGGGAAAACAAGGACAATATCTCAAGCACCGGG
CAACAGCTTCTCGAATCCGGTGAGCGTCTTGTAAAGGGCGACACTGACGG
TTTTCGTGAGAAAGCGTCAGGAATCAACTTGTCATGGTTGAGGCCTCTCC
GCAGATCAAGTCCCTCGGAAGGTGCCGATGATGATGTTATTGTTGGTAGT
CAAGTGCGAAAAACGCTTTTTTTCCTCATCGATTCGCTTACGCCTTGGGA
CTTTGACCGCCATGACTTTGGTCTAACGTTTGTAACTATATGGAATGATG
TGGAGGCTCTGAAACAGGCCGACGTTAACGTCGCCACGCTGAAAATGACG
TCCACCATAAAGCCCATTGAGCAGGAATGGAAGTTGAGTGCTCGGGGGAA
GCTATTTGATCTTGGGGAGAACACGGCCGTGTTTGGTAAAGCAGGCTTGT
ATCTGGCGGGTGACAGTCCAGCGTATATTGGTGCGGAGGCGGATCGTGTA
TGGCCTATCCCAAGACTTCCTGGGACGAAGTTATTCGCAAATGTGAACTA
CCGCAGCTCCAGAAAACCGCAGAAAGATCCCATAAAGATGACATGTGGTA
TTGAGCAAGATTTCGCGATTGCGAAGGGAGTCGACCTCACACTAAGGCTC
GCGTTTAACATCATCGAAAACATGGGTATCAGCATCTATCCCGTTCCAAA
CGGAAGTTACTTCTGA
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Coding sequence (CDS) from alignment at tig00000208_pilon:42239..43204-

>Ggra1258.t1 ID=Ggra1258.t1|Name=Ggra1258.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=966bp|location=Sequence derived from alignment at tig00000208_pilon:42239..43204- (Gracilaria gracilis GNS1m male)
ATGTCTGTAATAGTGAGCCAATCGTCTGTATGTCCGCGTCGGCCTGCTCG
GCCCCGCCCTCACCGTCGAGTTTCTATCGCGACGTATGCCACTACGCCAA
CACCCGAGACACAGAATCTCAAGCAGCAACTGGAAGCCATTCTTGATGCT
ATACCGACGTTCCTGGACACCGCAACTGGACGAGTTGAGAGAGCGGTGGC
CTCTATTCCGGATCAAGTTAAGTACCTGTTTTCCGACGAAGGTCCGCTTG
GAGTGTTGAACTTCTGGAGGGAAAACAAGGACAATATCTCAAGCACCGGG
CAACAGCTTCTCGAATCCGGTGAGCGTCTTGTAAAGGGCGACACTGACGG
TTTTCGTGAGAAAGCGTCAGGAATCAACTTGTCATGGTTGAGGCCTCTCC
GCAGATCAAGTCCCTCGGAAGGTGCCGATGATGATGTTATTGTTGGTAGT
CAAGTGCGAAAAACGCTTTTTTTCCTCATCGATTCGCTTACGCCTTGGGA
CTTTGACCGCCATGACTTTGGTCTAACGTTTGTAACTATATGGAATGATG
TGGAGGCTCTGAAACAGGCCGACGTTAACGTCGCCACGCTGAAAATGACG
TCCACCATAAAGCCCATTGAGCAGGAATGGAAGTTGAGTGCTCGGGGGAA
GCTATTTGATCTTGGGGAGAACACGGCCGTGTTTGGTAAAGCAGGCTTGT
ATCTGGCGGGTGACAGTCCAGCGTATATTGGTGCGGAGGCGGATCGTGTA
TGGCCTATCCCAAGACTTCCTGGGACGAAGTTATTCGCAAATGTGAACTA
CCGCAGCTCCAGAAAACCGCAGAAAGATCCCATAAAGATGACATGTGGTA
TTGAGCAAGATTTCGCGATTGCGAAGGGAGTCGACCTCACACTAAGGCTC
GCGTTTAACATCATCGAAAACATGGGTATCAGCATCTATCCCGTTCCAAA
CGGAAGTTACTTCTGA
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