Ggra1257.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1257.t1
Unique NameGgra1257.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length558
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000208_piloncontigtig00000208_pilon:39163..40836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9785.ENSLAFP00000018255
Preferred nameDUX4
PFAMsHomeobox
Max annot lvl33208|Metazoa
GOsGO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010948,GO:0012501,GO:0012505,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Evalue4.42e-09
EggNOG OGsKOG0849@1|root,KOG0849@2759|Eukaryota,3AKJQ@33154|Opisthokonta,3C0G1@33208|Metazoa,3D7UI@33213|Bilateria,48F2Z@7711|Chordata,49BWF@7742|Vertebrata,3JH5Z@40674|Mammalia,3589T@311790|Afrotheria
DescriptionHomeobox KN domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1257Ggra1257Gracilaria gracilis GNS1m malegenetig00000208_pilon 39163..40836 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1257.t1.start1Ggra1257.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000208_pilon 39163..39165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1257.t1.CDS1Ggra1257.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000208_pilon 39163..40836 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1257.t1.exon1Ggra1257.t1.exon1Gracilaria gracilis GNS1m maleexontig00000208_pilon 39163..40836 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1257.t1.stop1Ggra1257.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000208_pilon 40834..40836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1257.t1Ggra1257.t1Gracilaria gracilis GNS1m malepolypeptidetig00000208_pilon 39163..40836 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1257.t1 ID=Ggra1257.t1|Name=Ggra1257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp
MAHHQPQPPKLSNVAPPLLPPPSQPPPLLPPTTPDLSAPLATASTPTLGA
TALLVTASPTTPALSTSPAPPIVTFAPVPAAAPVTLSAPPLSQPTHSKWR
VTPAQKEVLLKAFDEEPYPELHKKNTLAHQLGVTTAQISKWFQHRREHLT
RLGQFKAQYNRTRRTPEELDVLQAAFDADRYPTAERLQQLANQLQGVTPK
QIKLWFKHRRKQDQKRRRSNTSPISLRSSPTLPSHAVQPGLRSMRPVDLS
ASSHDSTRPDWRTTLPTNLVPNVQQCQQLPHPTLIQTPSASNVPYSFDAH
HYYPYKQPQFLVSPSQSPFSRSELLALQAVQTVLISTPSPDAITKLAQLL
NKPQDAIRDWFRAQDNIRMSEPTAAAAAHDSQQNPFMQSPIMQVAEHTMR
QATAKPSMIDSHTSPTLHDLRKIDNDISMSEKSSKMVTDDMKAQTTRELD
THKEFSTLDDKQSMDTALKTNAPREAAAQNNVMPNVGTGIYPTYVYPNSV
VDGGIMVQPHSAPFQQAQASSTPTLAPLRFMPSTSNAAPYIAQNAVWYHA
APSLQPK*
back to top

spliced messenger RNA

>Ggra1257.t1 ID=Ggra1257.t1|Name=Ggra1257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000208_pilon:39163..40836+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCATCACCAGCCGCAACCCCCTAAACTTTCCAACGTCGCGCCGCC
ACTGTTACCCCCGCCTTCCCAGCCGCCCCCTTTACTACCCCCTACCACTC
CCGATCTCTCTGCCCCTCTTGCCACCGCTTCAACTCCAACGCTTGGCGCC
ACCGCTCTTCTGGTCACCGCCAGTCCCACCACCCCTGCGCTCTCCACGTC
TCCGGCTCCCCCCATCGTCACATTCGCCCCTGTTCCTGCTGCTGCCCCTG
TCACTCTGTCAGCACCACCACTTTCGCAGCCCACTCATTCAAAATGGCGC
GTCACTCCAGCGCAGAAGGAAGTTCTTCTCAAGGCCTTCGATGAAGAACC
GTATCCAGAGCTCCACAAGAAGAACACTCTGGCCCATCAACTGGGCGTCA
CCACAGCTCAAATATCAAAGTGGTTTCAGCATCGTCGTGAACATCTGACT
CGTCTGGGTCAGTTCAAAGCACAGTACAACCGCACACGTCGTACCCCAGA
GGAACTTGACGTTCTACAAGCCGCCTTTGACGCAGATCGCTACCCGACAG
CAGAGCGTTTGCAACAATTAGCAAACCAGCTGCAAGGAGTCACTCCCAAA
CAGATCAAGCTGTGGTTCAAGCATCGTAGAAAGCAGGACCAGAAAAGAAG
GCGTTCGAACACCTCACCAATCTCACTGCGATCCTCCCCAACACTCCCTT
CACACGCAGTGCAGCCCGGTCTACGATCCATGCGTCCCGTCGATCTGTCA
GCCTCATCACATGATTCCACCAGACCCGACTGGCGTACAACTCTGCCAAC
AAATCTTGTTCCCAACGTACAGCAATGTCAACAGCTCCCCCATCCCACTC
TTATACAAACGCCATCGGCTAGCAATGTGCCATACTCGTTTGATGCTCAT
CACTACTATCCGTACAAACAGCCTCAATTCCTTGTATCACCTTCGCAATC
TCCATTTTCGAGGTCGGAGCTTTTGGCTTTGCAGGCTGTTCAAACCGTTC
TCATCTCTACCCCATCCCCAGATGCAATCACCAAATTGGCTCAGCTTCTC
AACAAGCCGCAAGATGCGATTCGCGACTGGTTCAGAGCTCAGGATAATAT
CCGTATGTCAGAACCCACCGCTGCCGCTGCTGCGCACGATTCGCAACAAA
ATCCATTTATGCAATCGCCAATTATGCAAGTGGCTGAGCATACTATGCGC
CAAGCAACTGCCAAGCCATCTATGATAGATAGTCATACTTCACCCACACT
GCACGATCTGCGTAAGATTGATAATGACATTAGTATGTCGGAAAAGAGTT
CCAAGATGGTCACTGATGATATGAAGGCGCAAACTACGCGAGAATTGGAT
ACCCATAAGGAGTTTAGTACTCTAGATGATAAGCAGAGCATGGACACTGC
CCTCAAGACGAATGCCCCAAGAGAAGCTGCAGCTCAGAATAATGTCATGC
CAAACGTTGGCACTGGAATTTACCCAACATATGTTTATCCGAACAGTGTA
GTAGATGGTGGGATTATGGTGCAACCTCATTCTGCGCCGTTTCAACAAGC
ACAGGCATCCTCGACCCCGACGTTGGCTCCTTTAAGATTCATGCCTTCAA
CTTCGAATGCTGCTCCATACATTGCGCAGAATGCAGTGTGGTACCATGCT
GCACCTAGTCTGCAACCGAAATAG
back to top

protein sequence of Ggra1257.t1

>Ggra1257.t1 ID=Ggra1257.t1|Name=Ggra1257.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=558bp
MAHHQPQPPKLSNVAPPLLPPPSQPPPLLPPTTPDLSAPLATASTPTLGA
TALLVTASPTTPALSTSPAPPIVTFAPVPAAAPVTLSAPPLSQPTHSKWR
VTPAQKEVLLKAFDEEPYPELHKKNTLAHQLGVTTAQISKWFQHRREHLT
RLGQFKAQYNRTRRTPEELDVLQAAFDADRYPTAERLQQLANQLQGVTPK
QIKLWFKHRRKQDQKRRRSNTSPISLRSSPTLPSHAVQPGLRSMRPVDLS
ASSHDSTRPDWRTTLPTNLVPNVQQCQQLPHPTLIQTPSASNVPYSFDAH
HYYPYKQPQFLVSPSQSPFSRSELLALQAVQTVLISTPSPDAITKLAQLL
NKPQDAIRDWFRAQDNIRMSEPTAAAAAHDSQQNPFMQSPIMQVAEHTMR
QATAKPSMIDSHTSPTLHDLRKIDNDISMSEKSSKMVTDDMKAQTTRELD
THKEFSTLDDKQSMDTALKTNAPREAAAQNNVMPNVGTGIYPTYVYPNSV
VDGGIMVQPHSAPFQQAQASSTPTLAPLRFMPSTSNAAPYIAQNAVWYHA
APSLQPK*
back to top

mRNA from alignment at tig00000208_pilon:39163..40836+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1257.t1 ID=Ggra1257.t1|Name=Ggra1257.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000208_pilon:39163..40836+ (Gracilaria gracilis GNS1m male)
ATGGCTCATCACCAGCCGCAACCCCCTAAACTTTCCAACGTCGCGCCGCC
ACTGTTACCCCCGCCTTCCCAGCCGCCCCCTTTACTACCCCCTACCACTC
CCGATCTCTCTGCCCCTCTTGCCACCGCTTCAACTCCAACGCTTGGCGCC
ACCGCTCTTCTGGTCACCGCCAGTCCCACCACCCCTGCGCTCTCCACGTC
TCCGGCTCCCCCCATCGTCACATTCGCCCCTGTTCCTGCTGCTGCCCCTG
TCACTCTGTCAGCACCACCACTTTCGCAGCCCACTCATTCAAAATGGCGC
GTCACTCCAGCGCAGAAGGAAGTTCTTCTCAAGGCCTTCGATGAAGAACC
GTATCCAGAGCTCCACAAGAAGAACACTCTGGCCCATCAACTGGGCGTCA
CCACAGCTCAAATATCAAAGTGGTTTCAGCATCGTCGTGAACATCTGACT
CGTCTGGGTCAGTTCAAAGCACAGTACAACCGCACACGTCGTACCCCAGA
GGAACTTGACGTTCTACAAGCCGCCTTTGACGCAGATCGCTACCCGACAG
CAGAGCGTTTGCAACAATTAGCAAACCAGCTGCAAGGAGTCACTCCCAAA
CAGATCAAGCTGTGGTTCAAGCATCGTAGAAAGCAGGACCAGAAAAGAAG
GCGTTCGAACACCTCACCAATCTCACTGCGATCCTCCCCAACACTCCCTT
CACACGCAGTGCAGCCCGGTCTACGATCCATGCGTCCCGTCGATCTGTCA
GCCTCATCACATGATTCCACCAGACCCGACTGGCGTACAACTCTGCCAAC
AAATCTTGTTCCCAACGTACAGCAATGTCAACAGCTCCCCCATCCCACTC
TTATACAAACGCCATCGGCTAGCAATGTGCCATACTCGTTTGATGCTCAT
CACTACTATCCGTACAAACAGCCTCAATTCCTTGTATCACCTTCGCAATC
TCCATTTTCGAGGTCGGAGCTTTTGGCTTTGCAGGCTGTTCAAACCGTTC
TCATCTCTACCCCATCCCCAGATGCAATCACCAAATTGGCTCAGCTTCTC
AACAAGCCGCAAGATGCGATTCGCGACTGGTTCAGAGCTCAGGATAATAT
CCGTATGTCAGAACCCACCGCTGCCGCTGCTGCGCACGATTCGCAACAAA
ATCCATTTATGCAATCGCCAATTATGCAAGTGGCTGAGCATACTATGCGC
CAAGCAACTGCCAAGCCATCTATGATAGATAGTCATACTTCACCCACACT
GCACGATCTGCGTAAGATTGATAATGACATTAGTATGTCGGAAAAGAGTT
CCAAGATGGTCACTGATGATATGAAGGCGCAAACTACGCGAGAATTGGAT
ACCCATAAGGAGTTTAGTACTCTAGATGATAAGCAGAGCATGGACACTGC
CCTCAAGACGAATGCCCCAAGAGAAGCTGCAGCTCAGAATAATGTCATGC
CAAACGTTGGCACTGGAATTTACCCAACATATGTTTATCCGAACAGTGTA
GTAGATGGTGGGATTATGGTGCAACCTCATTCTGCGCCGTTTCAACAAGC
ACAGGCATCCTCGACCCCGACGTTGGCTCCTTTAAGATTCATGCCTTCAA
CTTCGAATGCTGCTCCATACATTGCGCAGAATGCAGTGTGGTACCATGCT
GCACCTAGTCTGCAACCGAAATAG
back to top

Coding sequence (CDS) from alignment at tig00000208_pilon:39163..40836+

>Ggra1257.t1 ID=Ggra1257.t1|Name=Ggra1257.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1674bp|location=Sequence derived from alignment at tig00000208_pilon:39163..40836+ (Gracilaria gracilis GNS1m male)
ATGGCTCATCACCAGCCGCAACCCCCTAAACTTTCCAACGTCGCGCCGCC
ACTGTTACCCCCGCCTTCCCAGCCGCCCCCTTTACTACCCCCTACCACTC
CCGATCTCTCTGCCCCTCTTGCCACCGCTTCAACTCCAACGCTTGGCGCC
ACCGCTCTTCTGGTCACCGCCAGTCCCACCACCCCTGCGCTCTCCACGTC
TCCGGCTCCCCCCATCGTCACATTCGCCCCTGTTCCTGCTGCTGCCCCTG
TCACTCTGTCAGCACCACCACTTTCGCAGCCCACTCATTCAAAATGGCGC
GTCACTCCAGCGCAGAAGGAAGTTCTTCTCAAGGCCTTCGATGAAGAACC
GTATCCAGAGCTCCACAAGAAGAACACTCTGGCCCATCAACTGGGCGTCA
CCACAGCTCAAATATCAAAGTGGTTTCAGCATCGTCGTGAACATCTGACT
CGTCTGGGTCAGTTCAAAGCACAGTACAACCGCACACGTCGTACCCCAGA
GGAACTTGACGTTCTACAAGCCGCCTTTGACGCAGATCGCTACCCGACAG
CAGAGCGTTTGCAACAATTAGCAAACCAGCTGCAAGGAGTCACTCCCAAA
CAGATCAAGCTGTGGTTCAAGCATCGTAGAAAGCAGGACCAGAAAAGAAG
GCGTTCGAACACCTCACCAATCTCACTGCGATCCTCCCCAACACTCCCTT
CACACGCAGTGCAGCCCGGTCTACGATCCATGCGTCCCGTCGATCTGTCA
GCCTCATCACATGATTCCACCAGACCCGACTGGCGTACAACTCTGCCAAC
AAATCTTGTTCCCAACGTACAGCAATGTCAACAGCTCCCCCATCCCACTC
TTATACAAACGCCATCGGCTAGCAATGTGCCATACTCGTTTGATGCTCAT
CACTACTATCCGTACAAACAGCCTCAATTCCTTGTATCACCTTCGCAATC
TCCATTTTCGAGGTCGGAGCTTTTGGCTTTGCAGGCTGTTCAAACCGTTC
TCATCTCTACCCCATCCCCAGATGCAATCACCAAATTGGCTCAGCTTCTC
AACAAGCCGCAAGATGCGATTCGCGACTGGTTCAGAGCTCAGGATAATAT
CCGTATGTCAGAACCCACCGCTGCCGCTGCTGCGCACGATTCGCAACAAA
ATCCATTTATGCAATCGCCAATTATGCAAGTGGCTGAGCATACTATGCGC
CAAGCAACTGCCAAGCCATCTATGATAGATAGTCATACTTCACCCACACT
GCACGATCTGCGTAAGATTGATAATGACATTAGTATGTCGGAAAAGAGTT
CCAAGATGGTCACTGATGATATGAAGGCGCAAACTACGCGAGAATTGGAT
ACCCATAAGGAGTTTAGTACTCTAGATGATAAGCAGAGCATGGACACTGC
CCTCAAGACGAATGCCCCAAGAGAAGCTGCAGCTCAGAATAATGTCATGC
CAAACGTTGGCACTGGAATTTACCCAACATATGTTTATCCGAACAGTGTA
GTAGATGGTGGGATTATGGTGCAACCTCATTCTGCGCCGTTTCAACAAGC
ACAGGCATCCTCGACCCCGACGTTGGCTCCTTTAAGATTCATGCCTTCAA
CTTCGAATGCTGCTCCATACATTGCGCAGAATGCAGTGTGGTACCATGCT
GCACCTAGTCTGCAACCGAAATAG
back to top