Ggra1223.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1223.t1
Unique NameGgra1223.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:158198..159058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1223Ggra1223Gracilaria gracilis GNS1m malegenetig00000926_pilon 158198..159058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1223.t1Ggra1223.t1Gracilaria gracilis GNS1m malepolypeptidetig00000926_pilon 158198..159058 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1223.t1.start1Ggra1223.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000926_pilon 158198..158200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1223.t1.CDS1Ggra1223.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000926_pilon 158198..158414 +
Ggra1223.t1.CDS2Ggra1223.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000926_pilon 158487..159058 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1223.t1.exon1Ggra1223.t1.exon1Gracilaria gracilis GNS1m maleexontig00000926_pilon 158198..158414 +
Ggra1223.t1.exon2Ggra1223.t1.exon2Gracilaria gracilis GNS1m maleexontig00000926_pilon 158487..159058 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1223.t1.intron1Ggra1223.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000926_pilon 158415..158486 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1223.t1.stop1Ggra1223.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000926_pilon 159056..159058 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1223.t1 ID=Ggra1223.t1|Name=Ggra1223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=263bp
MKYFVLIQALFATSLARFLFGGLPGTSTDSAHTAPVVRQMGPGMGAGPGM
GAGQGLGMGGMGMGGMGMGMGGGMPPAPAPAPAPAPAPAPAPAPAPAPAP
APAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP
APAPAPAPFPFPFPFPGGILTSTSTSTATGTGTGGGGGSGGDGTGVGAVA
LAGVGGGGSSSPGFFAGGIGTGGSGIAAADDGGSAINLGSFFNGGFGGPG
GFGGLGTGTATA*
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spliced messenger RNA

>Ggra1223.t1 ID=Ggra1223.t1|Name=Ggra1223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000926_pilon:158198..159058+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTACTTCGTTCTCATTCAAGCTCTCTTTGCGACTAGTCTCGCCCG
CTTTCTCTTCGGAGGCCTGCCCGGTACCTCCACAGATAGCGCCCATACCG
CTCCGGTTGTAAGACAGatgggaccgggcatgggcgcgggacccggaatg
ggagctgggcaaggtttaggtatgggcggtatgggtatgggcggcatggg
catgggaatgggaggagGTATGCCGCCTGCACCGGCGCCCGCGCCTGCAC
CGGCTCCCGCGCCTGCACCAGCTCCCGCGCCTGCACCGGCGCCCGCGCCT
GCACCGGCTCCCGCGCCTGCACCGGCGCCCGCGCCTGCACCGGCTCCCGC
GCCTGCACCGGCTCCCGCGCCTGCACCGGCTCCCGCGCCTGCACCGGCTC
CCGCGCCTGCACCGGCTCCCGCGCCTGCACCGGCTCCCGCGCCTGCACCG
GCTCCCGCGCCGGCTCCGGCCCCGTTCCCGTTCCCGTTCCCATTCCCTGG
AGGCATATTGACATCGACGTCGACATCAACTGCTACCGGTACAGGCACAG
GCGGCGGTGGAGGAAGTGGGGGTGATGGAACTGGGGTCGGAGCCGTTGCA
CTTGCCGGAGTTGGTGGAGGTGGATCTAGCAGCCCTGGTTTCTTTGCTGG
TGGTATTGGCACTGGTGGTAGTGGAATTGCAGCTGCTGACGATGGTGGAA
GTGCGATTAACCTTGGAAGCTTTTTCAACGGCGGATTTGGTGGGCCTGGT
GGATTTGGCGGGCTTGGCACTGGAACAGCGACGGCCTAA
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protein sequence of Ggra1223.t1

>Ggra1223.t1 ID=Ggra1223.t1|Name=Ggra1223.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=263bp
MKYFVLIQALFATSLARFLFGGLPGTSTDSAHTAPVVRQMGPGMGAGPGM
GAGQGLGMGGMGMGGMGMGMGGGMPPAPAPAPAPAPAPAPAPAPAPAPAP
APAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP
APAPAPAPFPFPFPFPGGILTSTSTSTATGTGTGGGGGSGGDGTGVGAVA
LAGVGGGGSSSPGFFAGGIGTGGSGIAAADDGGSAINLGSFFNGGFGGPG
GFGGLGTGTATA*
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mRNA from alignment at tig00000926_pilon:158198..159058+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1223.t1 ID=Ggra1223.t1|Name=Ggra1223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000926_pilon:158198..159058+ (Gracilaria gracilis GNS1m male)
ATGAAGTACTTCGTTCTCATTCAAGCTCTCTTTGCGACTAGTCTCGCCCG
CTTTCTCTTCGGAGGCCTGCCCGGTACCTCCACAGATAGCGCCCATACCG
CTCCGGTTGTAAGACAGatgggaccgggcatgggcgcgggacccggaatg
ggagctgggcaaggtttaggtatgggcggtatgggtatgggcggcatggg
catgggaatgggaggaggtatgggaatgggaggtggtatgggaatgggag
gtggtatgggaatgggaggtggtatgggaatgggaGGAGGTATGCCGCCT
GCACCGGCGCCCGCGCCTGCACCGGCTCCCGCGCCTGCACCAGCTCCCGC
GCCTGCACCGGCGCCCGCGCCTGCACCGGCTCCCGCGCCTGCACCGGCGC
CCGCGCCTGCACCGGCTCCCGCGCCTGCACCGGCTCCCGCGCCTGCACCG
GCTCCCGCGCCTGCACCGGCTCCCGCGCCTGCACCGGCTCCCGCGCCTGC
ACCGGCTCCCGCGCCTGCACCGGCTCCCGCGCCGGCTCCGGCCCCGTTCC
CGTTCCCGTTCCCATTCCCTGGAGGCATATTGACATCGACGTCGACATCA
ACTGCTACCGGTACAGGCACAGGCGGCGGTGGAGGAAGTGGGGGTGATGG
AACTGGGGTCGGAGCCGTTGCACTTGCCGGAGTTGGTGGAGGTGGATCTA
GCAGCCCTGGTTTCTTTGCTGGTGGTATTGGCACTGGTGGTAGTGGAATT
GCAGCTGCTGACGATGGTGGAAGTGCGATTAACCTTGGAAGCTTTTTCAA
CGGCGGATTTGGTGGGCCTGGTGGATTTGGCGGGCTTGGCACTGGAACAG
CGACGGCCTAA
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Coding sequence (CDS) from alignment at tig00000926_pilon:158198..159058+

>Ggra1223.t1 ID=Ggra1223.t1|Name=Ggra1223.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00000926_pilon:158198..159058+ (Gracilaria gracilis GNS1m male)
ATGAAGTACTTCGTTCTCATTCAAGCTCTCTTTGCGACTAGTCTCGCCCG
CTTTCTCTTCGGAGGCCTGCCCGGTACCTCCACAGATAGCGCCCATACCG
CTCCGGTTGTAAGACAGatgggaccgggcatgggcgcgggacccggaatg
ggagctgggcaaggtttaggtatgggcggtatgggtatgggcggcatggg
catgggaatgggaggagGTATGCCGCCTGCACCGGCGCCCGCGCCTGCAC
CGGCTCCCGCGCCTGCACCAGCTCCCGCGCCTGCACCGGCGCCCGCGCCT
GCACCGGCTCCCGCGCCTGCACCGGCGCCCGCGCCTGCACCGGCTCCCGC
GCCTGCACCGGCTCCCGCGCCTGCACCGGCTCCCGCGCCTGCACCGGCTC
CCGCGCCTGCACCGGCTCCCGCGCCTGCACCGGCTCCCGCGCCTGCACCG
GCTCCCGCGCCGGCTCCGGCCCCGTTCCCGTTCCCGTTCCCATTCCCTGG
AGGCATATTGACATCGACGTCGACATCAACTGCTACCGGTACAGGCACAG
GCGGCGGTGGAGGAAGTGGGGGTGATGGAACTGGGGTCGGAGCCGTTGCA
CTTGCCGGAGTTGGTGGAGGTGGATCTAGCAGCCCTGGTTTCTTTGCTGG
TGGTATTGGCACTGGTGGTAGTGGAATTGCAGCTGCTGACGATGGTGGAA
GTGCGATTAACCTTGGAAGCTTTTTCAACGGCGGATTTGGTGGGCCTGGT
GGATTTGGCGGGCTTGGCACTGGAACAGCGACGGCCTAA
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