Ggra1219.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1219.t1
Unique NameGgra1219.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length392
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:138982..140157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001749017.1
Preferred nameCOG6
PFAMsCOG6
Max annot lvl33154|Opisthokonta
KEGG koko:K20293
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
Evalue0.000491
EggNOG OGsKOG3758@1|root,KOG3758@2759|Eukaryota,38DBZ@33154|Opisthokonta
Descriptionintra-Golgi vesicle-mediated transport
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1219Ggra1219Gracilaria gracilis GNS1m malegenetig00000926_pilon 138982..140157 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1219.t1.stop1Ggra1219.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000926_pilon 138982..138984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1219.t1.CDS1Ggra1219.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000926_pilon 138982..140157 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1219.t1.exon1Ggra1219.t1.exon1Gracilaria gracilis GNS1m maleexontig00000926_pilon 138982..140157 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1219.t1.start1Ggra1219.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000926_pilon 140155..140157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1219.t1Ggra1219.t1Gracilaria gracilis GNS1m malepolypeptidetig00000926_pilon 138982..140157 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1219.t1 ID=Ggra1219.t1|Name=Ggra1219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=392bp
MASKRSKLASTATKRLLRRCLRRLSVRTRVLLLVAFGFLCGSLSQLLLLR
CVLPLFSRAPSSPTLLPTARVCDRDQYAHASRPSYAFFFVTGRSATQHLS
RALVSRRAPVAFVTHEQEHVTQRTKHVVFHDYRALAAEADEAAFNRSAAH
YVRQSKLPMYRQLLRAHAATRLVYTGHVPMAFGLGPALVHALPPGSLRVV
RVRRDRLATAVSLMALGPPAEDPWGATVVGANSTANLTLFAMPPPTVNSR
WFPTPTDAFVRLGVSPSAWRSMNRFQRWLWYVDDVECRWQAMVHALGDRF
SWMEDSVENLSAMDGGRAWARLAQFVGVDVDWEKVAARDNSIEHKQRLKV
DASESQLREWDMQYRQLVGECSIAPSLSYGWQHFALRSNSN*
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spliced messenger RNA

>Ggra1219.t1 ID=Ggra1219.t1|Name=Ggra1219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000926_pilon:138982..140157- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCAAGCGCTCCAAGCTGGCGAGCACCGCCACCAAGCGGCTGCT
GCGCCGCTGCCTGCGTCGGCTCAGCGTGCGCACGCGCGTGTTGTTGCTCG
TCGCCTTCGGCTTTCTGTGCGGCAGCTTGTCCCAATTGCTGCTTCTGCGC
TGCGTTCTTCCGCTCTTTTCGCGCGCGCCTTCGTCGCCGACGCTGCTTCC
CACCGCGCGCGTGTGCGACCGCGACCAATACGCGCACGCTTCGCGCCCGT
CATACGCCTTCTTCTTCGTCACGGGTCGCTCCGCCACGCAGCATCTCTCG
CGCGCGCTTGTGTCGCGCCGCGCGCCCGTGGCATTCGTCACACACGAGCA
GGAACACGTCACGCAGCGTACCAAGCACGTAGTGTTTCACGACTATCGTG
CGCTGGCCGCTGAGGCTGACGAGGCCGCGTTCAATCGCTCGGCCGCGCAC
TATGTCCGCCAGTCCAAGCTGCCCATGTATCGCCAGCTGCTGCGCGCGCA
CGCCGCTACACGCCTTGTGTACACCGGCCATGTGCCGATGGCGTTCGGGC
TGGGGCCGGCGTTGGTGCACGCGTTGCCGCCCGGCTCGCTGCGCGTCGTC
AGGGTGCGCCGAGATCGCTTGGCCACTGCCGTGTCGCTCATGGCGCTCGG
TCCGCCCGCCGAAGATCCGTGGGGTGCCACTGTTGTTGGTGCCAACTCTA
CCGCCAACCTCACCTTGTTTGCCATGCCGCCGCCCACCGTCAACTCGCGC
TGGTTCCCGACGCCTACCGATGCGTTTGTGAGATTGGGTGTCTCGCCCAG
CGCGTGGCGCTCCATGAACCGCTTTCAGCGCTGGCTGTGGTACGTTGACG
ACGTTGAATGCCGCTGGCAGGCCATGGTGCACGCGCTGGGCGACCGCTTC
TCGTGGATGGAGGACAGCGTGGAAAACTTGAGCGCCATGGATGGCGGCAG
GGCGTGGGCGCGTTTGGCGCAGTTTGTGGGCGTTGACGTTGACTGGGAAA
AGGTGGCTGCACGTGATAACAGCATTGAACACAAGCAGCGGCTCAAGGTG
GACGCGTCCGAGTCGCAGCTTCGCGAGTGGGATATGCAATACCGCCAGCT
GGTGGGCGAGTGCTCCATCGCGCCGTCGCTTTCGTACGGCTGGCAACACT
TTGCGCTGCGCTCCAACTCCAATTGA
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protein sequence of Ggra1219.t1

>Ggra1219.t1 ID=Ggra1219.t1|Name=Ggra1219.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=392bp
MASKRSKLASTATKRLLRRCLRRLSVRTRVLLLVAFGFLCGSLSQLLLLR
CVLPLFSRAPSSPTLLPTARVCDRDQYAHASRPSYAFFFVTGRSATQHLS
RALVSRRAPVAFVTHEQEHVTQRTKHVVFHDYRALAAEADEAAFNRSAAH
YVRQSKLPMYRQLLRAHAATRLVYTGHVPMAFGLGPALVHALPPGSLRVV
RVRRDRLATAVSLMALGPPAEDPWGATVVGANSTANLTLFAMPPPTVNSR
WFPTPTDAFVRLGVSPSAWRSMNRFQRWLWYVDDVECRWQAMVHALGDRF
SWMEDSVENLSAMDGGRAWARLAQFVGVDVDWEKVAARDNSIEHKQRLKV
DASESQLREWDMQYRQLVGECSIAPSLSYGWQHFALRSNSN*
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mRNA from alignment at tig00000926_pilon:138982..140157-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1219.t1 ID=Ggra1219.t1|Name=Ggra1219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000926_pilon:138982..140157- (Gracilaria gracilis GNS1m male)
ATGGCGTCCAAGCGCTCCAAGCTGGCGAGCACCGCCACCAAGCGGCTGCT
GCGCCGCTGCCTGCGTCGGCTCAGCGTGCGCACGCGCGTGTTGTTGCTCG
TCGCCTTCGGCTTTCTGTGCGGCAGCTTGTCCCAATTGCTGCTTCTGCGC
TGCGTTCTTCCGCTCTTTTCGCGCGCGCCTTCGTCGCCGACGCTGCTTCC
CACCGCGCGCGTGTGCGACCGCGACCAATACGCGCACGCTTCGCGCCCGT
CATACGCCTTCTTCTTCGTCACGGGTCGCTCCGCCACGCAGCATCTCTCG
CGCGCGCTTGTGTCGCGCCGCGCGCCCGTGGCATTCGTCACACACGAGCA
GGAACACGTCACGCAGCGTACCAAGCACGTAGTGTTTCACGACTATCGTG
CGCTGGCCGCTGAGGCTGACGAGGCCGCGTTCAATCGCTCGGCCGCGCAC
TATGTCCGCCAGTCCAAGCTGCCCATGTATCGCCAGCTGCTGCGCGCGCA
CGCCGCTACACGCCTTGTGTACACCGGCCATGTGCCGATGGCGTTCGGGC
TGGGGCCGGCGTTGGTGCACGCGTTGCCGCCCGGCTCGCTGCGCGTCGTC
AGGGTGCGCCGAGATCGCTTGGCCACTGCCGTGTCGCTCATGGCGCTCGG
TCCGCCCGCCGAAGATCCGTGGGGTGCCACTGTTGTTGGTGCCAACTCTA
CCGCCAACCTCACCTTGTTTGCCATGCCGCCGCCCACCGTCAACTCGCGC
TGGTTCCCGACGCCTACCGATGCGTTTGTGAGATTGGGTGTCTCGCCCAG
CGCGTGGCGCTCCATGAACCGCTTTCAGCGCTGGCTGTGGTACGTTGACG
ACGTTGAATGCCGCTGGCAGGCCATGGTGCACGCGCTGGGCGACCGCTTC
TCGTGGATGGAGGACAGCGTGGAAAACTTGAGCGCCATGGATGGCGGCAG
GGCGTGGGCGCGTTTGGCGCAGTTTGTGGGCGTTGACGTTGACTGGGAAA
AGGTGGCTGCACGTGATAACAGCATTGAACACAAGCAGCGGCTCAAGGTG
GACGCGTCCGAGTCGCAGCTTCGCGAGTGGGATATGCAATACCGCCAGCT
GGTGGGCGAGTGCTCCATCGCGCCGTCGCTTTCGTACGGCTGGCAACACT
TTGCGCTGCGCTCCAACTCCAATTGA
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Coding sequence (CDS) from alignment at tig00000926_pilon:138982..140157-

>Ggra1219.t1 ID=Ggra1219.t1|Name=Ggra1219.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000926_pilon:138982..140157- (Gracilaria gracilis GNS1m male)
ATGGCGTCCAAGCGCTCCAAGCTGGCGAGCACCGCCACCAAGCGGCTGCT
GCGCCGCTGCCTGCGTCGGCTCAGCGTGCGCACGCGCGTGTTGTTGCTCG
TCGCCTTCGGCTTTCTGTGCGGCAGCTTGTCCCAATTGCTGCTTCTGCGC
TGCGTTCTTCCGCTCTTTTCGCGCGCGCCTTCGTCGCCGACGCTGCTTCC
CACCGCGCGCGTGTGCGACCGCGACCAATACGCGCACGCTTCGCGCCCGT
CATACGCCTTCTTCTTCGTCACGGGTCGCTCCGCCACGCAGCATCTCTCG
CGCGCGCTTGTGTCGCGCCGCGCGCCCGTGGCATTCGTCACACACGAGCA
GGAACACGTCACGCAGCGTACCAAGCACGTAGTGTTTCACGACTATCGTG
CGCTGGCCGCTGAGGCTGACGAGGCCGCGTTCAATCGCTCGGCCGCGCAC
TATGTCCGCCAGTCCAAGCTGCCCATGTATCGCCAGCTGCTGCGCGCGCA
CGCCGCTACACGCCTTGTGTACACCGGCCATGTGCCGATGGCGTTCGGGC
TGGGGCCGGCGTTGGTGCACGCGTTGCCGCCCGGCTCGCTGCGCGTCGTC
AGGGTGCGCCGAGATCGCTTGGCCACTGCCGTGTCGCTCATGGCGCTCGG
TCCGCCCGCCGAAGATCCGTGGGGTGCCACTGTTGTTGGTGCCAACTCTA
CCGCCAACCTCACCTTGTTTGCCATGCCGCCGCCCACCGTCAACTCGCGC
TGGTTCCCGACGCCTACCGATGCGTTTGTGAGATTGGGTGTCTCGCCCAG
CGCGTGGCGCTCCATGAACCGCTTTCAGCGCTGGCTGTGGTACGTTGACG
ACGTTGAATGCCGCTGGCAGGCCATGGTGCACGCGCTGGGCGACCGCTTC
TCGTGGATGGAGGACAGCGTGGAAAACTTGAGCGCCATGGATGGCGGCAG
GGCGTGGGCGCGTTTGGCGCAGTTTGTGGGCGTTGACGTTGACTGGGAAA
AGGTGGCTGCACGTGATAACAGCATTGAACACAAGCAGCGGCTCAAGGTG
GACGCGTCCGAGTCGCAGCTTCGCGAGTGGGATATGCAATACCGCCAGCT
GGTGGGCGAGTGCTCCATCGCGCCGTCGCTTTCGTACGGCTGGCAACACT
TTGCGCTGCGCTCCAACTCCAATTGA
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