Ggra1208.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1208.t1
Unique Name	Ggra1208.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:320432..321961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1208	Ggra1208	Gracilaria gracilis GNS1m male	gene	tig00000168_pilon 320432..321961 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1208.t1.start1	Ggra1208.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000168_pilon 320432..320434 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1208.t1.CDS1	Ggra1208.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000168_pilon 320432..321961 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1208.t1.exon1	Ggra1208.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000168_pilon 320432..321961 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1208.t1.stop1	Ggra1208.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000168_pilon 321959..321961 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1208.t1	Ggra1208.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000168_pilon 320432..321961 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:320432..321961+
coding sequence from alignment at tig00000168_pilon:320432..321961+

mRNA sequence

>Ggra1208.t1 ID=Ggra1208.t1|Name=Ggra1208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MPFRHSVGQNTGAVFVSSSSESRNQVSFACRGAKNGQILFQSDDSDFISH
NARSYRNNRMDRDQSREDEKNDPFLNVGLGQRRRFGSDVNDSDEDDCASP
LPKFRQRRKRGLSWDGHTSDEDECFSPLPLPKPRQMRKRRSSWDGHDSEE
DDYVSPLPNAQQRRKGGSTLDLFDSDEDNYISPLPNARLGPKGRSGRRVH
DSDENDYIRRLPKVRRGRKRMPSCDDFSENGEALCQRRRLEGGNDERDVV
NTDGKDPISTSNAQQDRADRHFEIVNLISDEEVEVKPFGTKLISSECPKS
KTLAAVEAAWKIWVLQLEKRRPGIFTGDEAKMKICSRARQGNSVYEGIGV
TERNCLGARAALKAFRSTQNLKERSSRAEKELLTTISQFLRWCVANDSCS
KMDVWKEETLFRCVGLSEVVEKFLMYFQKRCEEQTVRKKANNLMVVCEAA
SASGWQNGILDVSMVLQVLCDKKSRATACRIQYEKVGWSFKRPFQRSRSK
LGRSKREVA*

spliced messenger RNA

>Ggra1208.t1 ID=Ggra1208.t1|Name=Ggra1208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000168_pilon:320432..321961+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTCAGACATAGCGTTGGGCAGAATACGGGCGCGGTTTTCGTTTC
AAGCTCATCTGAATCAAGAAACCAGGTATCGTTTGCCTGCCGGGGTGCCA
AGAATGGACAGATCTTATTTCAATCGGATGATAGCGATTTCATCTCTCAT
AATGCTCGGTCCTATCGGAATAACAGGATGGACCGGGATCAATCTCGTGA
AGATGAAAAGAACGACCCTTTTCTCAACGTTGGACTTGGGCAGAGGAGGA
GGTTCGGCTCGGATGTTAATGATTCGGACGAGGATGATTGCGCTAGTCCC
CTTCCCAAGTTCCGACAAAGGCGGAAGAGGGGACTGAGCTGGGATGGCCA
TACTTCGGATGAGGACGAATGCTTCAGCCCCCTTCCTCTTCCCAAACCCC
GACAAATGCGGAAACGGAGATCGAGCTGGGATGGCCATGATTCGGAGGAG
GATGATTACGTCAGCCCCCTTCCCAATGCCCAACAAAGGCGGAAGGGGGG
GTCGACCTTGGATCTTTTTGACTCAGATGAGGACAATTACATCAGCCCCC
TTCCCAACGCCCGACTGGGGCCGAAGGGAAGGTCGGGCAGGCGTGTTCAT
GACTCGGATGAGAACGATTACATCCGCCGCCTTCCCAAAGTTCGACGAGG
ACGGAAGAGGATGCCGAGCTGTGATGACTTCAGCGAAAATGGTGAAGCAT
TGTGCCAAAGGAGACGGTTAGAGGGAGGTAATGACGAACGCGACGTAGTC
AACACGGATGGCAAGGATCCGATTTCTACATCAAATGCTCAGCAAGATCG
TGCTGATCGTCACTTCGAAATTGTTAATCTCATCTCAGATGAAGAGGTTG
AAGTGAAACCATTCGGGACGAAGTTAATATCATCGGAATGCCCGAAATCT
AAGACATTGGCTGCCGTGGAAGCGGCTTGGAAAATTTGGGTCCTTCAACT
CGAGAAGAGGAGGCCAGGCATATTCACCGGAGATGAAGCGAAAATGAAGA
TATGCTCGAGAGCTCGGCAGGGGAATTCCGTTTACGAAGGAATTGGGGTT
ACTGAACGGAACTGCTTGGGTGCTCGAGCTGCCTTGAAGGCTTTTAGGAG
TACTCAGAACCTAAAGGAACGCTCGAGCAGAGCAGAGAAGGAACTGCTCA
CGACTATTTCACAATTCTTGCGTTGGTGTGTCGCCAATGATTCTTGCTCT
AAAATGGATGTCTGGAAAGAGGAAACTCTATTTCGATGTGTCGGACTTAG
TGAAGTGGTCGAGAAGTTCTTGATGTACTTTCAGAAGCGATGTGAGGAGC
AGACGGTGCGTAAGAAAGCAAATAACCTCATGGTCGTTTGCGAGGCGGCA
AGTGCCAGTGGATGGCAGAACGGGATTCTGGATGTATCGATGGTGCTTCA
GGTCTTATGCGATAAGAAGAGCCGAGCTACGGCATGTAGAATCCAATACG
AGAAGGTTGGGTGGTCTTTCAAGCGGCCCTTCCAGCGCAGTAGGAGCAAG
CTCGGAAGATCGAAGCGAGAGGTGGCATGA

protein sequence of Ggra1208.t1

>Ggra1208.t1 ID=Ggra1208.t1|Name=Ggra1208.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MPFRHSVGQNTGAVFVSSSSESRNQVSFACRGAKNGQILFQSDDSDFISH
NARSYRNNRMDRDQSREDEKNDPFLNVGLGQRRRFGSDVNDSDEDDCASP
LPKFRQRRKRGLSWDGHTSDEDECFSPLPLPKPRQMRKRRSSWDGHDSEE
DDYVSPLPNAQQRRKGGSTLDLFDSDEDNYISPLPNARLGPKGRSGRRVH
DSDENDYIRRLPKVRRGRKRMPSCDDFSENGEALCQRRRLEGGNDERDVV
NTDGKDPISTSNAQQDRADRHFEIVNLISDEEVEVKPFGTKLISSECPKS
KTLAAVEAAWKIWVLQLEKRRPGIFTGDEAKMKICSRARQGNSVYEGIGV
TERNCLGARAALKAFRSTQNLKERSSRAEKELLTTISQFLRWCVANDSCS
KMDVWKEETLFRCVGLSEVVEKFLMYFQKRCEEQTVRKKANNLMVVCEAA
SASGWQNGILDVSMVLQVLCDKKSRATACRIQYEKVGWSFKRPFQRSRSK
LGRSKREVA*

mRNA from alignment at tig00000168_pilon:320432..321961+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1208.t1 ID=Ggra1208.t1|Name=Ggra1208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000168_pilon:320432..321961+ (Gracilaria gracilis GNS1m male)
ATGCCTTTCAGACATAGCGTTGGGCAGAATACGGGCGCGGTTTTCGTTTC
AAGCTCATCTGAATCAAGAAACCAGGTATCGTTTGCCTGCCGGGGTGCCA
AGAATGGACAGATCTTATTTCAATCGGATGATAGCGATTTCATCTCTCAT
AATGCTCGGTCCTATCGGAATAACAGGATGGACCGGGATCAATCTCGTGA
AGATGAAAAGAACGACCCTTTTCTCAACGTTGGACTTGGGCAGAGGAGGA
GGTTCGGCTCGGATGTTAATGATTCGGACGAGGATGATTGCGCTAGTCCC
CTTCCCAAGTTCCGACAAAGGCGGAAGAGGGGACTGAGCTGGGATGGCCA
TACTTCGGATGAGGACGAATGCTTCAGCCCCCTTCCTCTTCCCAAACCCC
GACAAATGCGGAAACGGAGATCGAGCTGGGATGGCCATGATTCGGAGGAG
GATGATTACGTCAGCCCCCTTCCCAATGCCCAACAAAGGCGGAAGGGGGG
GTCGACCTTGGATCTTTTTGACTCAGATGAGGACAATTACATCAGCCCCC
TTCCCAACGCCCGACTGGGGCCGAAGGGAAGGTCGGGCAGGCGTGTTCAT
GACTCGGATGAGAACGATTACATCCGCCGCCTTCCCAAAGTTCGACGAGG
ACGGAAGAGGATGCCGAGCTGTGATGACTTCAGCGAAAATGGTGAAGCAT
TGTGCCAAAGGAGACGGTTAGAGGGAGGTAATGACGAACGCGACGTAGTC
AACACGGATGGCAAGGATCCGATTTCTACATCAAATGCTCAGCAAGATCG
TGCTGATCGTCACTTCGAAATTGTTAATCTCATCTCAGATGAAGAGGTTG
AAGTGAAACCATTCGGGACGAAGTTAATATCATCGGAATGCCCGAAATCT
AAGACATTGGCTGCCGTGGAAGCGGCTTGGAAAATTTGGGTCCTTCAACT
CGAGAAGAGGAGGCCAGGCATATTCACCGGAGATGAAGCGAAAATGAAGA
TATGCTCGAGAGCTCGGCAGGGGAATTCCGTTTACGAAGGAATTGGGGTT
ACTGAACGGAACTGCTTGGGTGCTCGAGCTGCCTTGAAGGCTTTTAGGAG
TACTCAGAACCTAAAGGAACGCTCGAGCAGAGCAGAGAAGGAACTGCTCA
CGACTATTTCACAATTCTTGCGTTGGTGTGTCGCCAATGATTCTTGCTCT
AAAATGGATGTCTGGAAAGAGGAAACTCTATTTCGATGTGTCGGACTTAG
TGAAGTGGTCGAGAAGTTCTTGATGTACTTTCAGAAGCGATGTGAGGAGC
AGACGGTGCGTAAGAAAGCAAATAACCTCATGGTCGTTTGCGAGGCGGCA
AGTGCCAGTGGATGGCAGAACGGGATTCTGGATGTATCGATGGTGCTTCA
GGTCTTATGCGATAAGAAGAGCCGAGCTACGGCATGTAGAATCCAATACG
AGAAGGTTGGGTGGTCTTTCAAGCGGCCCTTCCAGCGCAGTAGGAGCAAG
CTCGGAAGATCGAAGCGAGAGGTGGCATGA

Coding sequence (CDS) from alignment at tig00000168_pilon:320432..321961+

>Ggra1208.t1 ID=Ggra1208.t1|Name=Ggra1208.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000168_pilon:320432..321961+ (Gracilaria gracilis GNS1m male)
ATGCCTTTCAGACATAGCGTTGGGCAGAATACGGGCGCGGTTTTCGTTTC
AAGCTCATCTGAATCAAGAAACCAGGTATCGTTTGCCTGCCGGGGTGCCA
AGAATGGACAGATCTTATTTCAATCGGATGATAGCGATTTCATCTCTCAT
AATGCTCGGTCCTATCGGAATAACAGGATGGACCGGGATCAATCTCGTGA
AGATGAAAAGAACGACCCTTTTCTCAACGTTGGACTTGGGCAGAGGAGGA
GGTTCGGCTCGGATGTTAATGATTCGGACGAGGATGATTGCGCTAGTCCC
CTTCCCAAGTTCCGACAAAGGCGGAAGAGGGGACTGAGCTGGGATGGCCA
TACTTCGGATGAGGACGAATGCTTCAGCCCCCTTCCTCTTCCCAAACCCC
GACAAATGCGGAAACGGAGATCGAGCTGGGATGGCCATGATTCGGAGGAG
GATGATTACGTCAGCCCCCTTCCCAATGCCCAACAAAGGCGGAAGGGGGG
GTCGACCTTGGATCTTTTTGACTCAGATGAGGACAATTACATCAGCCCCC
TTCCCAACGCCCGACTGGGGCCGAAGGGAAGGTCGGGCAGGCGTGTTCAT
GACTCGGATGAGAACGATTACATCCGCCGCCTTCCCAAAGTTCGACGAGG
ACGGAAGAGGATGCCGAGCTGTGATGACTTCAGCGAAAATGGTGAAGCAT
TGTGCCAAAGGAGACGGTTAGAGGGAGGTAATGACGAACGCGACGTAGTC
AACACGGATGGCAAGGATCCGATTTCTACATCAAATGCTCAGCAAGATCG
TGCTGATCGTCACTTCGAAATTGTTAATCTCATCTCAGATGAAGAGGTTG
AAGTGAAACCATTCGGGACGAAGTTAATATCATCGGAATGCCCGAAATCT
AAGACATTGGCTGCCGTGGAAGCGGCTTGGAAAATTTGGGTCCTTCAACT
CGAGAAGAGGAGGCCAGGCATATTCACCGGAGATGAAGCGAAAATGAAGA
TATGCTCGAGAGCTCGGCAGGGGAATTCCGTTTACGAAGGAATTGGGGTT
ACTGAACGGAACTGCTTGGGTGCTCGAGCTGCCTTGAAGGCTTTTAGGAG
TACTCAGAACCTAAAGGAACGCTCGAGCAGAGCAGAGAAGGAACTGCTCA
CGACTATTTCACAATTCTTGCGTTGGTGTGTCGCCAATGATTCTTGCTCT
AAAATGGATGTCTGGAAAGAGGAAACTCTATTTCGATGTGTCGGACTTAG
TGAAGTGGTCGAGAAGTTCTTGATGTACTTTCAGAAGCGATGTGAGGAGC
AGACGGTGCGTAAGAAAGCAAATAACCTCATGGTCGTTTGCGAGGCGGCA
AGTGCCAGTGGATGGCAGAACGGGATTCTGGATGTATCGATGGTGCTTCA
GGTCTTATGCGATAAGAAGAGCCGAGCTACGGCATGTAGAATCCAATACG
AGAAGGTTGGGTGGTCTTTCAAGCGGCCCTTCCAGCGCAGTAGGAGCAAG
CTCGGAAGATCGAAGCGAGAGGTGGCATGA