Ggra1203.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1203.t1
Unique NameGgra1203.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:159998..160902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LNX3
PFAMsTFCD_C
Max annot lvl2759|Eukaryota
KEGG koko:K21767
Evalue7.94e-25
EggNOG OGsCOG2116@1|root,KOG1943@2759|Eukaryota
Descriptionpost-chaperonin tubulin folding pathway
COG categoryP
BRITEko00000,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1203Ggra1203Gracilaria gracilis GNS1m malegenetig00000168_pilon 159998..160902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1203.t1Ggra1203.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 159998..160902 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1203.t1.start1Ggra1203.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 159998..160000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1203.t1.CDS1Ggra1203.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 159998..160358 +
Ggra1203.t1.CDS2Ggra1203.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000168_pilon 160790..160902 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1203.t1.exon1Ggra1203.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 159998..160358 +
Ggra1203.t1.exon2Ggra1203.t1.exon2Gracilaria gracilis GNS1m maleexontig00000168_pilon 160790..160902 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1203.t1.intron1Ggra1203.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000168_pilon 160359..160789 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1203.t1.stop1Ggra1203.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 160900..160902 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1203.t1 ID=Ggra1203.t1|Name=Ggra1203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=158bp
MQLFDERSEARADAALHGACLALAELVGRGLILPENALFAKEFDAVRIAA
SFDMRRGSNSVGAYVRDASFYKVWSIARAYESEQVAPFADVISDSMILLA
LLDSEVNFRRAAAAALEECVGNTVMVMGEVAYRRRPGKGGNTGPRATEAA
ESSLIAD*
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spliced messenger RNA

>Ggra1203.t1 ID=Ggra1203.t1|Name=Ggra1203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000168_pilon:159998..160902+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTTTTCGATGAGCGTTCTGAAGCGCGTGCTGACGCTGCTTTGCA
CGGAGCCTGTTTAGCGCTTGCAGAACTCGTAGGACGAGGTCTTATTCTAC
CAGAGAATGCGCTCTTTGCAAAAGAATTTGACGCCGTACGCATTGCAGCC
AGCTTCGATATGCGTCGTGGTTCAAACTCTGTTGGTGCTTATGTCCGCGA
TGCTAGCTTTTATAAAGTCTGGTCCATTGCTAGAGCATATGAATCGGAAC
AAGTCGCCCCGTTTGCTGACGTGATTAGTGACAGTATGATTCTACTGGCC
TTGCTCGACAGTGAGGTCAATTTCAGAAGGGCTGCCGCAGCTGCTTTGGA
GGAGTGCGTAGGCAATACGGTCATGGTGATGGGAGAAGTGGCATACAGAA
GACGTCCTGGAAAGGGCGGGAATACCGGACCAAGAGCTACAGAAGCTGCA
GAATCAAGTTTAATAGCTGATTGA
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protein sequence of Ggra1203.t1

>Ggra1203.t1 ID=Ggra1203.t1|Name=Ggra1203.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=158bp
MQLFDERSEARADAALHGACLALAELVGRGLILPENALFAKEFDAVRIAA
SFDMRRGSNSVGAYVRDASFYKVWSIARAYESEQVAPFADVISDSMILLA
LLDSEVNFRRAAAAALEECVGNTVMVMGEVAYRRRPGKGGNTGPRATEAA
ESSLIAD*
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mRNA from alignment at tig00000168_pilon:159998..160902+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1203.t1 ID=Ggra1203.t1|Name=Ggra1203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=905bp|location=Sequence derived from alignment at tig00000168_pilon:159998..160902+ (Gracilaria gracilis GNS1m male)
ATGCAGCTTTTCGATGAGCGTTCTGAAGCGCGTGCTGACGCTGCTTTGCA
CGGAGCCTGTTTAGCGCTTGCAGAACTCGTAGGACGAGGTCTTATTCTAC
CAGAGAATGCGCTCTTTGCAAAAGAATTTGACGCCGTACGCATTGCAGCC
AGCTTCGATATGCGTCGTGGTTCAAACTCTGTTGGTGCTTATGTCCGCGA
TGCTAGCTTTTATAAAGTCTGGTCCATTGCTAGAGCATATGAATCGGAAC
AAGTCGCCCCGTTTGCTGACGTGATTAGTGACAGTATGATTCTACTGGCC
TTGCTCGACAGTGAGGTCAATTTCAGAAGGGCTGCCGCAGCTGCTTTGGA
GGAGTGCGTAGGTACACTATCACAACAGCTGTTTCAAGATGGCATTCAGA
TCATCACACTGGCAGATTACTTTTCGTTAGAAGATAGGAAAGTCTCGTAC
ATGGATATTGCGCAAAAAGTAGCTTCGATTGCTAACGAGAAGCATTTTAG
CTGCATTCTGCGGGAATTGTCAAATTTCCACGACAGCTGGACAGtagcgt
ggcggctggacagcaatccgaggtgccatggcgcttcatcggtgcaccga
tgaaacgccatgacaccccggaccgctgtccacaccccaacggttgtacG
AACCGCACTGCCTAACTGAGAATGTCGAGATTGTCGCTCACTATCTCTCT
GCTCATATAGTCGTACAAGCAACAAGAATGGGAAGAAACATAGAAAGAGA
GGCGGTGCAAGACAGAGGCGGTGGTGTATCGTTTGCCGGCAGGCAATACG
GTCATGGTGATGGGAGAAGTGGCATACAGAAGACGTCCTGGAAAGGGCGG
GAATACCGGACCAAGAGCTACAGAAGCTGCAGAATCAAGTTTAATAGCTG
ATTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:159998..160902+

>Ggra1203.t1 ID=Ggra1203.t1|Name=Ggra1203.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=474bp|location=Sequence derived from alignment at tig00000168_pilon:159998..160902+ (Gracilaria gracilis GNS1m male)
ATGCAGCTTTTCGATGAGCGTTCTGAAGCGCGTGCTGACGCTGCTTTGCA
CGGAGCCTGTTTAGCGCTTGCAGAACTCGTAGGACGAGGTCTTATTCTAC
CAGAGAATGCGCTCTTTGCAAAAGAATTTGACGCCGTACGCATTGCAGCC
AGCTTCGATATGCGTCGTGGTTCAAACTCTGTTGGTGCTTATGTCCGCGA
TGCTAGCTTTTATAAAGTCTGGTCCATTGCTAGAGCATATGAATCGGAAC
AAGTCGCCCCGTTTGCTGACGTGATTAGTGACAGTATGATTCTACTGGCC
TTGCTCGACAGTGAGGTCAATTTCAGAAGGGCTGCCGCAGCTGCTTTGGA
GGAGTGCGTAGGCAATACGGTCATGGTGATGGGAGAAGTGGCATACAGAA
GACGTCCTGGAAAGGGCGGGAATACCGGACCAAGAGCTACAGAAGCTGCA
GAATCAAGTTTAATAGCTGATTGA
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