Ggra1200.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1200.t1
Unique Name	Ggra1200.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	575

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:99471..101195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1200	Ggra1200	Gracilaria gracilis GNS1m male	gene	tig00000168_pilon 99471..101195 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1200.t1.start1	Ggra1200.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000168_pilon 99471..99473 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1200.t1.CDS1	Ggra1200.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000168_pilon 99471..101195 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1200.t1.exon1	Ggra1200.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000168_pilon 99471..101195 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1200.t1.stop1	Ggra1200.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000168_pilon 101193..101195 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1200.t1	Ggra1200.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000168_pilon 99471..101195 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:99471..101195+
coding sequence from alignment at tig00000168_pilon:99471..101195+

mRNA sequence

>Ggra1200.t1 ID=Ggra1200.t1|Name=Ggra1200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=575bp
MKHKKWSPGSKLKTSDDEYRGRTGTKRRLSSWEEEDVIELLTPKKRRVLD
NPDPRRNRSARVLDSSESECVEVFEFGKRRGGLLVNKGIRGRGGASLDRQ
SSMRKLRCAERGGQSASRRASSEFAVKDMSLSKRRGRTKMCERRSSSIVE
LHSDDDSGQVLDVGRNQRTPRSRKLGCGKSEGSRARQLGTGMGRLQCTGT
AGGITSSAASSSDFVTDGYTKTFNGAGDLDAERRSSSIIDLDSDGDSVEM
FDVGRNHGTPGGRKLGRGRGEGSRARQLGTGTGKLQRTGTAGGITSSAAS
SFDSVTDDYTKTYNGAEDLDAERRSSSVMELHSDGDSVEMFEVGRNHRTS
RGKKSGCDRGGAPRARQLGIERERLQGSGRVEVTASATDAKMEWRIRLKE
LGKAKPDVFDGPEALLQIRTRARRGKPVYSGIGVTVRNCLGLGKVLATFN
LFYKSSFARPEKTKKDLITTVSQFLRWCVSSSSCGKFDVWKPKALFGNIT
KMAVVEPFIEYFEARCEKRTVREKATYLIIIGDSACSYDCGRWTKEINDV
STMLQYYGGRKRNVGNMPPPARCR*

spliced messenger RNA

>Ggra1200.t1 ID=Ggra1200.t1|Name=Ggra1200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000168_pilon:99471..101195+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCACAAGAAGTGGAGCCCCGGTTCCAAGCTCAAGACGAGCGACGA
CGAATATCGAGGACGAACGGGGACGAAAAGGCGTTTGAGCTCTTGGGAAG
AGGAAGACGTAATCGAATTGTTAACCCCCAAGAAGAGGAGAGTACTTGAC
AACCCCGACCCGAGGCGAAACAGATCAGCACGAGTACTCGATTCCTCGGA
GAGTGAATGCGTTGAGGTTTTCGAGTTTGGAAAGCGTCGTGGAGGCCTTC
TCGTCAACAAGGGGATTCGTGGTAGAGGAGGGGCTTCTCTTGATCGCCAG
TCGAGCATGAGAAAACTACGTTGTGCTGAAAGAGGGGGACAAAGTGCGTC
TAGAAGAGCATCATCAGAGTTTGCTGTCAAAGACATGTCACTTAGCAAGA
GGCGCGGAAGGACGAAGATGTGTGAACGCAGGTCGTCGAGCATCGTCGAG
CTACATTCGGATGATGATAGCGGACAGGTATTAGATGTTGGAAGGAATCA
GCGAACCCCCCGTAGTAGAAAGTTGGGTTGTGGAAAAAGCGAAGGTTCCC
GTGCTCGCCAATTGGGAACTGGGATGGGAAGACTACAATGTACCGGGACA
GCGGGAGGAATCACGTCCAGCGCAGCGTCGTCATCTGACTTTGTGACGGA
CGGCTACACCAAGACCTTCAACGGAGCTGGAGATCTTGATGCTGAACGCA
GGTCGTCGAGCATCATCGACCTAGACTCGGATGGCGATAGCGTAGAGATG
TTTGATGTTGGAAGGAATCATGGAACCCCTGGTGGTAGAAAGTTGGGTCG
TGGAAGAGGCGAAGGTTCCCGTGCTCGCCAGCTTGGGACAGGGACGGGAA
AACTGCAACGTACGGGGACAGCGGGAGGAATCACGTCCAGCGCAGCGTCG
TCTTTTGACTCTGTGACGGACGATTACACGAAGACCTATAACGGAGCTGA
AGATCTTGATGCTGAACGCAGGTCGTCGAGCGTCATGGAGCTACACTCGG
ATGGTGATAGCGTAGAGATGTTTGAAGTTGGAAGGAATCATCGAACCTCT
CGTGGCAAAAAGTCGGGTTGCGATAGAGGTGGAGCTCCCCGTGCTCGCCA
GTTGGGGATCGAGAGAGAACGACTGCAAGGTTCTGGAAGAGTTGAGGTAA
CCGCATCGGCGACAGACGCAAAGATGGAATGGAGGATCAGATTGAAAGAA
CTGGGGAAAGCGAAACCCGATGTTTTCGATGGTCCGGAGGCCCTGCTTCA
GATCCGTACAAGAGCTCGACGAGGAAAGCCTGTGTACAGCGGAATTGGGG
TAACAGTACGAAACTGTCTTGGTTTAGGAAAGGTGCTCGCCACCTTTAAT
CTGTTTTATAAATCGAGCTTCGCGAGGCCTGAGAAGACGAAGAAGGACCT
GATCACCACAGTTTCACAGTTTCTGCGTTGGTGCGTTTCGAGTTCATCTT
GTGGGAAATTTGACGTCTGGAAGCCAAAAGCATTGTTCGGGAACATCACG
AAGATGGCAGTTGTGGAACCATTTATTGAGTATTTCGAAGCACGTTGCGA
AAAGCGAACGGTTAGGGAGAAAGCAACATATCTCATTATAATTGGTGATT
CGGCATGTTCTTACGACTGTGGAAGGTGGACGAAGGAGATCAATGATGTT
TCTACGATGCTTCAGTACTATGGGGGAAGAAAGAGAAATGTCGGAAACAT
GCCTCCTCCGGCAAGGTGCCGTTGA

protein sequence of Ggra1200.t1

>Ggra1200.t1 ID=Ggra1200.t1|Name=Ggra1200.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=575bp
MKHKKWSPGSKLKTSDDEYRGRTGTKRRLSSWEEEDVIELLTPKKRRVLD
NPDPRRNRSARVLDSSESECVEVFEFGKRRGGLLVNKGIRGRGGASLDRQ
SSMRKLRCAERGGQSASRRASSEFAVKDMSLSKRRGRTKMCERRSSSIVE
LHSDDDSGQVLDVGRNQRTPRSRKLGCGKSEGSRARQLGTGMGRLQCTGT
AGGITSSAASSSDFVTDGYTKTFNGAGDLDAERRSSSIIDLDSDGDSVEM
FDVGRNHGTPGGRKLGRGRGEGSRARQLGTGTGKLQRTGTAGGITSSAAS
SFDSVTDDYTKTYNGAEDLDAERRSSSVMELHSDGDSVEMFEVGRNHRTS
RGKKSGCDRGGAPRARQLGIERERLQGSGRVEVTASATDAKMEWRIRLKE
LGKAKPDVFDGPEALLQIRTRARRGKPVYSGIGVTVRNCLGLGKVLATFN
LFYKSSFARPEKTKKDLITTVSQFLRWCVSSSSCGKFDVWKPKALFGNIT
KMAVVEPFIEYFEARCEKRTVREKATYLIIIGDSACSYDCGRWTKEINDV
STMLQYYGGRKRNVGNMPPPARCR*

mRNA from alignment at tig00000168_pilon:99471..101195+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1200.t1 ID=Ggra1200.t1|Name=Ggra1200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000168_pilon:99471..101195+ (Gracilaria gracilis GNS1m male)
ATGAAGCACAAGAAGTGGAGCCCCGGTTCCAAGCTCAAGACGAGCGACGA
CGAATATCGAGGACGAACGGGGACGAAAAGGCGTTTGAGCTCTTGGGAAG
AGGAAGACGTAATCGAATTGTTAACCCCCAAGAAGAGGAGAGTACTTGAC
AACCCCGACCCGAGGCGAAACAGATCAGCACGAGTACTCGATTCCTCGGA
GAGTGAATGCGTTGAGGTTTTCGAGTTTGGAAAGCGTCGTGGAGGCCTTC
TCGTCAACAAGGGGATTCGTGGTAGAGGAGGGGCTTCTCTTGATCGCCAG
TCGAGCATGAGAAAACTACGTTGTGCTGAAAGAGGGGGACAAAGTGCGTC
TAGAAGAGCATCATCAGAGTTTGCTGTCAAAGACATGTCACTTAGCAAGA
GGCGCGGAAGGACGAAGATGTGTGAACGCAGGTCGTCGAGCATCGTCGAG
CTACATTCGGATGATGATAGCGGACAGGTATTAGATGTTGGAAGGAATCA
GCGAACCCCCCGTAGTAGAAAGTTGGGTTGTGGAAAAAGCGAAGGTTCCC
GTGCTCGCCAATTGGGAACTGGGATGGGAAGACTACAATGTACCGGGACA
GCGGGAGGAATCACGTCCAGCGCAGCGTCGTCATCTGACTTTGTGACGGA
CGGCTACACCAAGACCTTCAACGGAGCTGGAGATCTTGATGCTGAACGCA
GGTCGTCGAGCATCATCGACCTAGACTCGGATGGCGATAGCGTAGAGATG
TTTGATGTTGGAAGGAATCATGGAACCCCTGGTGGTAGAAAGTTGGGTCG
TGGAAGAGGCGAAGGTTCCCGTGCTCGCCAGCTTGGGACAGGGACGGGAA
AACTGCAACGTACGGGGACAGCGGGAGGAATCACGTCCAGCGCAGCGTCG
TCTTTTGACTCTGTGACGGACGATTACACGAAGACCTATAACGGAGCTGA
AGATCTTGATGCTGAACGCAGGTCGTCGAGCGTCATGGAGCTACACTCGG
ATGGTGATAGCGTAGAGATGTTTGAAGTTGGAAGGAATCATCGAACCTCT
CGTGGCAAAAAGTCGGGTTGCGATAGAGGTGGAGCTCCCCGTGCTCGCCA
GTTGGGGATCGAGAGAGAACGACTGCAAGGTTCTGGAAGAGTTGAGGTAA
CCGCATCGGCGACAGACGCAAAGATGGAATGGAGGATCAGATTGAAAGAA
CTGGGGAAAGCGAAACCCGATGTTTTCGATGGTCCGGAGGCCCTGCTTCA
GATCCGTACAAGAGCTCGACGAGGAAAGCCTGTGTACAGCGGAATTGGGG
TAACAGTACGAAACTGTCTTGGTTTAGGAAAGGTGCTCGCCACCTTTAAT
CTGTTTTATAAATCGAGCTTCGCGAGGCCTGAGAAGACGAAGAAGGACCT
GATCACCACAGTTTCACAGTTTCTGCGTTGGTGCGTTTCGAGTTCATCTT
GTGGGAAATTTGACGTCTGGAAGCCAAAAGCATTGTTCGGGAACATCACG
AAGATGGCAGTTGTGGAACCATTTATTGAGTATTTCGAAGCACGTTGCGA
AAAGCGAACGGTTAGGGAGAAAGCAACATATCTCATTATAATTGGTGATT
CGGCATGTTCTTACGACTGTGGAAGGTGGACGAAGGAGATCAATGATGTT
TCTACGATGCTTCAGTACTATGGGGGAAGAAAGAGAAATGTCGGAAACAT
GCCTCCTCCGGCAAGGTGCCGTTGA

Coding sequence (CDS) from alignment at tig00000168_pilon:99471..101195+

>Ggra1200.t1 ID=Ggra1200.t1|Name=Ggra1200.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1725bp|location=Sequence derived from alignment at tig00000168_pilon:99471..101195+ (Gracilaria gracilis GNS1m male)
ATGAAGCACAAGAAGTGGAGCCCCGGTTCCAAGCTCAAGACGAGCGACGA
CGAATATCGAGGACGAACGGGGACGAAAAGGCGTTTGAGCTCTTGGGAAG
AGGAAGACGTAATCGAATTGTTAACCCCCAAGAAGAGGAGAGTACTTGAC
AACCCCGACCCGAGGCGAAACAGATCAGCACGAGTACTCGATTCCTCGGA
GAGTGAATGCGTTGAGGTTTTCGAGTTTGGAAAGCGTCGTGGAGGCCTTC
TCGTCAACAAGGGGATTCGTGGTAGAGGAGGGGCTTCTCTTGATCGCCAG
TCGAGCATGAGAAAACTACGTTGTGCTGAAAGAGGGGGACAAAGTGCGTC
TAGAAGAGCATCATCAGAGTTTGCTGTCAAAGACATGTCACTTAGCAAGA
GGCGCGGAAGGACGAAGATGTGTGAACGCAGGTCGTCGAGCATCGTCGAG
CTACATTCGGATGATGATAGCGGACAGGTATTAGATGTTGGAAGGAATCA
GCGAACCCCCCGTAGTAGAAAGTTGGGTTGTGGAAAAAGCGAAGGTTCCC
GTGCTCGCCAATTGGGAACTGGGATGGGAAGACTACAATGTACCGGGACA
GCGGGAGGAATCACGTCCAGCGCAGCGTCGTCATCTGACTTTGTGACGGA
CGGCTACACCAAGACCTTCAACGGAGCTGGAGATCTTGATGCTGAACGCA
GGTCGTCGAGCATCATCGACCTAGACTCGGATGGCGATAGCGTAGAGATG
TTTGATGTTGGAAGGAATCATGGAACCCCTGGTGGTAGAAAGTTGGGTCG
TGGAAGAGGCGAAGGTTCCCGTGCTCGCCAGCTTGGGACAGGGACGGGAA
AACTGCAACGTACGGGGACAGCGGGAGGAATCACGTCCAGCGCAGCGTCG
TCTTTTGACTCTGTGACGGACGATTACACGAAGACCTATAACGGAGCTGA
AGATCTTGATGCTGAACGCAGGTCGTCGAGCGTCATGGAGCTACACTCGG
ATGGTGATAGCGTAGAGATGTTTGAAGTTGGAAGGAATCATCGAACCTCT
CGTGGCAAAAAGTCGGGTTGCGATAGAGGTGGAGCTCCCCGTGCTCGCCA
GTTGGGGATCGAGAGAGAACGACTGCAAGGTTCTGGAAGAGTTGAGGTAA
CCGCATCGGCGACAGACGCAAAGATGGAATGGAGGATCAGATTGAAAGAA
CTGGGGAAAGCGAAACCCGATGTTTTCGATGGTCCGGAGGCCCTGCTTCA
GATCCGTACAAGAGCTCGACGAGGAAAGCCTGTGTACAGCGGAATTGGGG
TAACAGTACGAAACTGTCTTGGTTTAGGAAAGGTGCTCGCCACCTTTAAT
CTGTTTTATAAATCGAGCTTCGCGAGGCCTGAGAAGACGAAGAAGGACCT
GATCACCACAGTTTCACAGTTTCTGCGTTGGTGCGTTTCGAGTTCATCTT
GTGGGAAATTTGACGTCTGGAAGCCAAAAGCATTGTTCGGGAACATCACG
AAGATGGCAGTTGTGGAACCATTTATTGAGTATTTCGAAGCACGTTGCGA
AAAGCGAACGGTTAGGGAGAAAGCAACATATCTCATTATAATTGGTGATT
CGGCATGTTCTTACGACTGTGGAAGGTGGACGAAGGAGATCAATGATGTT
TCTACGATGCTTCAGTACTATGGGGGAAGAAAGAGAAATGTCGGAAACAT
GCCTCCTCCGGCAAGGTGCCGTTGA