Ggra1179.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1179.t1
Unique NameGgra1179.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:93614..94276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705203.1
Preferred nameFBL
PFAMsFibrillarin
Max annot lvl2759|Eukaryota
KEGG koko:K14563
KEGG Pathwayko03008,map03008
GOsGO:0000154,GO:0000494,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001510,GO:0001650,GO:0001651,GO:0001652,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005732,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006403,GO:0006417,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008213,GO:0008276,GO:0008649,GO:0008757,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016074,GO:0016569,GO:0016570,GO:0016571,GO:0016592,GO:0016604,GO:0016740,GO:0016741,GO:0016787,GO:0016788,GO:0018364,GO:0019222,GO:0019538,GO:0019899,GO:0022613,GO:0030515,GO:0030532,GO:0030684,GO:0030686,GO:0031123,GO:0031126,GO:0031167,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033967,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034660,GO:0034963,GO:0036009,GO:0036211,GO:0042054,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045727,GO:0046483,GO:0048254,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0120114,GO:0140096,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1901564,GO:1990258,GO:1990259,GO:1990904,GO:2000112
Evalue3.11e-109
EggNOG OGsCOG1889@1|root,KOG1596@2759|Eukaryota
Descriptionhistone-glutamine methyltransferase activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1179Ggra1179Gracilaria gracilis GNS1m malegenetig00000237_pilon 93614..94276 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1179.t1.start1Ggra1179.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 93614..93616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1179.t1.CDS1Ggra1179.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 93614..94276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1179.t1.exon1Ggra1179.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 93614..94276 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1179.t1.stop1Ggra1179.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 94274..94276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1179.t1Ggra1179.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 93614..94276 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1179.t1 ID=Ggra1179.t1|Name=Ggra1179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MVVGESVYGEKRVQVEVTRKEGDTDVKDKIEYRFWSPFRSKLAAGIVGGL
DNCWIKPGGKVLYLGAASGTTVSHVSDVVGPSGVVYAVEFSPRSGRDLVN
LAKKRTNIVPIIEDARHPAKYRMLVGMVDVIFADVAQPDQARIVGINAQF
YLKTGGHYMISIKANCIDSTAPAAAVFANEVDKLRGMSLKPMEQLSLEPY
ERDHCVVVGVYKRKKKQITS*
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spliced messenger RNA

>Ggra1179.t1 ID=Ggra1179.t1|Name=Ggra1179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000237_pilon:93614..94276+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTAGGCGAAAGCGTGTATGGTGAGAAGCGCGTGCAGGTGGAGGT
CACCAGGAAAGAAGGAGATACGGACGTCAAGGATAAGATTGAATATCGTT
TCTGGTCACCTTTCAGGTCAAAACTGGCGGCTGGTATTGTTGGTGGTCTT
GACAACTGTTGGATCAAGCCGGGTGGCAAGGTATTGTATTTGGGAGCGGC
TTCCGGAACCACAGTTTCACATGTTTCAGACGTGGTGGGACCGTCAGGAG
TTGTATACGCTGTGGAATTCTCACCCAGATCAGGTAGGGATTTGGTGAAC
TTGGCAAAGAAACGAACCAACATCGTACCAATCATCGAGGACGCTAGACA
TCCTGCCAAGTACCGAATGCTAGTTGGTATGGTCGACGTGATCTTTGCCG
ATGTTGCCCAACCTGATCAAGCAAGAATTGTTGGTATCAATGCGCAGTTT
TACCTCAAGACCGGTGGACATTACATGATCTCCATCAAGGCAAACTGTAT
TGATTCAACAGCTCCGGCTGCGGCCGTGTTTGCAAACGAGGTGGACAAGC
TCAGGGGAATGTCGCTCAAGCCTATGGAACAACTGTCTCTGGAGCCGTAT
GAAAGAGATCATTGTGTTGTAGTTGGAGTATATAAGCGGAAAAAGAAGCA
GATCACGTCGTAA
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protein sequence of Ggra1179.t1

>Ggra1179.t1 ID=Ggra1179.t1|Name=Ggra1179.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MVVGESVYGEKRVQVEVTRKEGDTDVKDKIEYRFWSPFRSKLAAGIVGGL
DNCWIKPGGKVLYLGAASGTTVSHVSDVVGPSGVVYAVEFSPRSGRDLVN
LAKKRTNIVPIIEDARHPAKYRMLVGMVDVIFADVAQPDQARIVGINAQF
YLKTGGHYMISIKANCIDSTAPAAAVFANEVDKLRGMSLKPMEQLSLEPY
ERDHCVVVGVYKRKKKQITS*
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mRNA from alignment at tig00000237_pilon:93614..94276+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1179.t1 ID=Ggra1179.t1|Name=Ggra1179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000237_pilon:93614..94276+ (Gracilaria gracilis GNS1m male)
ATGGTTGTAGGCGAAAGCGTGTATGGTGAGAAGCGCGTGCAGGTGGAGGT
CACCAGGAAAGAAGGAGATACGGACGTCAAGGATAAGATTGAATATCGTT
TCTGGTCACCTTTCAGGTCAAAACTGGCGGCTGGTATTGTTGGTGGTCTT
GACAACTGTTGGATCAAGCCGGGTGGCAAGGTATTGTATTTGGGAGCGGC
TTCCGGAACCACAGTTTCACATGTTTCAGACGTGGTGGGACCGTCAGGAG
TTGTATACGCTGTGGAATTCTCACCCAGATCAGGTAGGGATTTGGTGAAC
TTGGCAAAGAAACGAACCAACATCGTACCAATCATCGAGGACGCTAGACA
TCCTGCCAAGTACCGAATGCTAGTTGGTATGGTCGACGTGATCTTTGCCG
ATGTTGCCCAACCTGATCAAGCAAGAATTGTTGGTATCAATGCGCAGTTT
TACCTCAAGACCGGTGGACATTACATGATCTCCATCAAGGCAAACTGTAT
TGATTCAACAGCTCCGGCTGCGGCCGTGTTTGCAAACGAGGTGGACAAGC
TCAGGGGAATGTCGCTCAAGCCTATGGAACAACTGTCTCTGGAGCCGTAT
GAAAGAGATCATTGTGTTGTAGTTGGAGTATATAAGCGGAAAAAGAAGCA
GATCACGTCGTAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:93614..94276+

>Ggra1179.t1 ID=Ggra1179.t1|Name=Ggra1179.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000237_pilon:93614..94276+ (Gracilaria gracilis GNS1m male)
ATGGTTGTAGGCGAAAGCGTGTATGGTGAGAAGCGCGTGCAGGTGGAGGT
CACCAGGAAAGAAGGAGATACGGACGTCAAGGATAAGATTGAATATCGTT
TCTGGTCACCTTTCAGGTCAAAACTGGCGGCTGGTATTGTTGGTGGTCTT
GACAACTGTTGGATCAAGCCGGGTGGCAAGGTATTGTATTTGGGAGCGGC
TTCCGGAACCACAGTTTCACATGTTTCAGACGTGGTGGGACCGTCAGGAG
TTGTATACGCTGTGGAATTCTCACCCAGATCAGGTAGGGATTTGGTGAAC
TTGGCAAAGAAACGAACCAACATCGTACCAATCATCGAGGACGCTAGACA
TCCTGCCAAGTACCGAATGCTAGTTGGTATGGTCGACGTGATCTTTGCCG
ATGTTGCCCAACCTGATCAAGCAAGAATTGTTGGTATCAATGCGCAGTTT
TACCTCAAGACCGGTGGACATTACATGATCTCCATCAAGGCAAACTGTAT
TGATTCAACAGCTCCGGCTGCGGCCGTGTTTGCAAACGAGGTGGACAAGC
TCAGGGGAATGTCGCTCAAGCCTATGGAACAACTGTCTCTGGAGCCGTAT
GAAAGAGATCATTGTGTTGTAGTTGGAGTATATAAGCGGAAAAAGAAGCA
GATCACGTCGTAA
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