Ggra1176.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1176.t1
Unique NameGgra1176.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:88539..90020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7245.FBpp0255433
PFAMsTrypsin
Max annot lvl33208|Metazoa
KEGG koko:K01312,ko:K09640
KEGG Pathwayko04080,ko04972,ko04974,ko05164,map04080,map04972,map04974,map05164
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue2.42e-25
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota,38F79@33154|Opisthokonta,3BBP0@33208|Metazoa,3CUWA@33213|Bilateria,41Z6R@6656|Arthropoda,3SMHF@50557|Insecta,452Z0@7147|Diptera
EC3.4.21.4
Descriptionserine-type endopeptidase activity. It is involved in the biological process described with proteolysis
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1176Ggra1176Gracilaria gracilis GNS1m malegenetig00000237_pilon 88539..90020 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1176.t1.start1Ggra1176.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 88539..88541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1176.t1.CDS1Ggra1176.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 88539..90020 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1176.t1.exon1Ggra1176.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 88539..90020 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1176.t1.stop1Ggra1176.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 90018..90020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1176.t1Ggra1176.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 88539..90020 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1176.t1 ID=Ggra1176.t1|Name=Ggra1176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MCGAAAVSVRATRKLFTQTLCSNASQLPVVRLFSSCPCFLAYEITSSSRA
TWDVLLLNSSSYVQWRRSNFSAAPRYVRQHSTLNGSSGGGGDGDGSAVRL
APTNVFDNGQFALVIRAASARHAQCFGGAQSPALRPAHAVFEPMPTPCAI
RADEPSAAARAPKIVGGSAVGAPPNSLASFGWMALIWEAEADAAAAAAAA
AARAQTTDARPICGGSHFRRGFVATAAHCVAARAHAPQLLRVSIGAVPAQ
AQRAQLLRVRAVHTHPQYETLPSNEALFDVAVLELQDDARTNHTIALNDD
ARAPAAGAFVTAAGFGYISEQWPALPQPNRLLRVDVPVVPTARCQAAFRA
VRADAHLCAGYAAGGCDSCQADSGGPLRHVRARGGEQRLVGVVSFGAGCA
RARSPGVYTRVSTVAAWMRAVADGALRERAERQRRRSVALAAGGAVFAAV
VLAVAAVALGAWGWRRRRRRLRAARTSAALARSDAPSETGVSA*
back to top

spliced messenger RNA

>Ggra1176.t1 ID=Ggra1176.t1|Name=Ggra1176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000237_pilon:88539..90020+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgTGCGGTGCGGCGGCGGTGAGCGTGCGCGCGACGCGCAAGCTGTTCAC
GCAGACGCTGTGCTCCAACGCGTCGCAGCTGCCGGTGGTGAGGCTGTTCT
CGTCGTGCCCATGCTTCCTGGCGTACGAGATCACGTCCTCGTCGCGCGCC
ACGTGGGACGTGCTGCTGCTCAACTCGTCGTCGTACGTGCAGTGGCGGCG
CAGCAACTTCAGCGCGGCGCCGCGCTACGTGCGGCAACACTCCACGCTGA
Acggcagcagcggcggcggcggcgacggcgacggcagcgcggtgcggctg
gcgCCCACCAACGTGTTCGACAACGGGCAGTTTGCACTGGTGATCCGCGC
CGCCAGCGCGCGCCACGCGCAGTGCTTTGGCGGCGCGCAGTCGCCAGCGC
TGCGGCCGGCGCACGCGGTGTTCGAGCCCATGCCCACGCCGTGCGCCATC
CGCGCCGACGAGCCGTCCGCCGCGGCGCGCGCGCCTAAAATCGTGGGCGG
CAGCGCGGTGGGCGCACCGCCCAATTCGCTCGCGTCGTTTGGGTGGATGG
CGTTAATCTGGGAggcggaggcggacgcggcggcggcggcggcggcggcg
gcggcgCGCGCGCAGACGACTGACGCGCGCCCCATCTGCGGCGGCTCGCA
CTTTCGGCGCGGCTTTGTGGCCACCGCCGCGCACTGCGTGGCGGCGCGCG
CGCACGCGCCGCAGCTGCTGCGCGTGAGCATCGGCGCGGTGCCCGCGCAG
GCGCAGCGCGCGCAGCTGCTGCGCGTGCGCGCGGTGCACACGCACCCGCA
GTACGAGACGCTGCCCAGCAACGAGGCGCTGTTCGACGTGGCGGTGCTGG
AGCTACAAGACGACGCGCGCACCAACCACACCATCGCGCTCAACGACGAC
GCGCGCGCGCCGGCGGCGGGCGCCTTCGTCACCGCCGCCGGCTTCGGCTA
CATCTCCGAGCAGTGGCCCGCGCTGCCGCAGCCCAACCGGCTGCTGCGCG
TGGACGTGCCCGTCGTGCCCACCGCGCGCTGCCAGGCCGCCTTCCGCGCC
GTGCGCGCCGACGCGCACCTGTGCGCGGGCTACGCCGCCGGCGGCTGCGA
CAGCTGCCAGGCCGACTCGGGCGGCCCGCTGCGCCACGTGCGCGCGCGCG
GCGGCGAGCAGCGGCTGGTGGGCGTGGTGTCGTTCGGCGCCGGCTGCGCG
CGCGCGCGCTCGCCCGGCGTGTACACGCGCGTCAGCACCGTCGCCGCGTG
GATGCGCGCCGTCGCCGACGGCGCGCTGCGAGAGCGCGCCGAGCGCCAGC
GCCGCCGCTCCGTCGCCCTGGCTGCTGGCGGCGCCGTGTTTGCCGCCGTC
GTGCTCGCTGTGGCCGCCGTCGCTTTGGGCGCGTGGGGGTGGCGCCGCCG
CCGCCGCCGTCTGCGCGCCGCGCGCACGTCCGCCGCCTTGGCGCGTAGCG
ACGCGCCCAGCGAGACGGGCGTGTCGGCCTGA
back to top

protein sequence of Ggra1176.t1

>Ggra1176.t1 ID=Ggra1176.t1|Name=Ggra1176.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MCGAAAVSVRATRKLFTQTLCSNASQLPVVRLFSSCPCFLAYEITSSSRA
TWDVLLLNSSSYVQWRRSNFSAAPRYVRQHSTLNGSSGGGGDGDGSAVRL
APTNVFDNGQFALVIRAASARHAQCFGGAQSPALRPAHAVFEPMPTPCAI
RADEPSAAARAPKIVGGSAVGAPPNSLASFGWMALIWEAEADAAAAAAAA
AARAQTTDARPICGGSHFRRGFVATAAHCVAARAHAPQLLRVSIGAVPAQ
AQRAQLLRVRAVHTHPQYETLPSNEALFDVAVLELQDDARTNHTIALNDD
ARAPAAGAFVTAAGFGYISEQWPALPQPNRLLRVDVPVVPTARCQAAFRA
VRADAHLCAGYAAGGCDSCQADSGGPLRHVRARGGEQRLVGVVSFGAGCA
RARSPGVYTRVSTVAAWMRAVADGALRERAERQRRRSVALAAGGAVFAAV
VLAVAAVALGAWGWRRRRRRLRAARTSAALARSDAPSETGVSA*
back to top

mRNA from alignment at tig00000237_pilon:88539..90020+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1176.t1 ID=Ggra1176.t1|Name=Ggra1176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000237_pilon:88539..90020+ (Gracilaria gracilis GNS1m male)
atgTGCGGTGCGGCGGCGGTGAGCGTGCGCGCGACGCGCAAGCTGTTCAC
GCAGACGCTGTGCTCCAACGCGTCGCAGCTGCCGGTGGTGAGGCTGTTCT
CGTCGTGCCCATGCTTCCTGGCGTACGAGATCACGTCCTCGTCGCGCGCC
ACGTGGGACGTGCTGCTGCTCAACTCGTCGTCGTACGTGCAGTGGCGGCG
CAGCAACTTCAGCGCGGCGCCGCGCTACGTGCGGCAACACTCCACGCTGA
Acggcagcagcggcggcggcggcgacggcgacggcagcgcggtgcggctg
gcgCCCACCAACGTGTTCGACAACGGGCAGTTTGCACTGGTGATCCGCGC
CGCCAGCGCGCGCCACGCGCAGTGCTTTGGCGGCGCGCAGTCGCCAGCGC
TGCGGCCGGCGCACGCGGTGTTCGAGCCCATGCCCACGCCGTGCGCCATC
CGCGCCGACGAGCCGTCCGCCGCGGCGCGCGCGCCTAAAATCGTGGGCGG
CAGCGCGGTGGGCGCACCGCCCAATTCGCTCGCGTCGTTTGGGTGGATGG
CGTTAATCTGGGAggcggaggcggacgcggcggcggcggcggcggcggcg
gcggcgCGCGCGCAGACGACTGACGCGCGCCCCATCTGCGGCGGCTCGCA
CTTTCGGCGCGGCTTTGTGGCCACCGCCGCGCACTGCGTGGCGGCGCGCG
CGCACGCGCCGCAGCTGCTGCGCGTGAGCATCGGCGCGGTGCCCGCGCAG
GCGCAGCGCGCGCAGCTGCTGCGCGTGCGCGCGGTGCACACGCACCCGCA
GTACGAGACGCTGCCCAGCAACGAGGCGCTGTTCGACGTGGCGGTGCTGG
AGCTACAAGACGACGCGCGCACCAACCACACCATCGCGCTCAACGACGAC
GCGCGCGCGCCGGCGGCGGGCGCCTTCGTCACCGCCGCCGGCTTCGGCTA
CATCTCCGAGCAGTGGCCCGCGCTGCCGCAGCCCAACCGGCTGCTGCGCG
TGGACGTGCCCGTCGTGCCCACCGCGCGCTGCCAGGCCGCCTTCCGCGCC
GTGCGCGCCGACGCGCACCTGTGCGCGGGCTACGCCGCCGGCGGCTGCGA
CAGCTGCCAGGCCGACTCGGGCGGCCCGCTGCGCCACGTGCGCGCGCGCG
GCGGCGAGCAGCGGCTGGTGGGCGTGGTGTCGTTCGGCGCCGGCTGCGCG
CGCGCGCGCTCGCCCGGCGTGTACACGCGCGTCAGCACCGTCGCCGCGTG
GATGCGCGCCGTCGCCGACGGCGCGCTGCGAGAGCGCGCCGAGCGCCAGC
GCCGCCGCTCCGTCGCCCTGGCTGCTGGCGGCGCCGTGTTTGCCGCCGTC
GTGCTCGCTGTGGCCGCCGTCGCTTTGGGCGCGTGGGGGTGGCGCCGCCG
CCGCCGCCGTCTGCGCGCCGCGCGCACGTCCGCCGCCTTGGCGCGTAGCG
ACGCGCCCAGCGAGACGGGCGTGTCGGCCTGA
back to top

Coding sequence (CDS) from alignment at tig00000237_pilon:88539..90020+

>Ggra1176.t1 ID=Ggra1176.t1|Name=Ggra1176.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000237_pilon:88539..90020+ (Gracilaria gracilis GNS1m male)
atgTGCGGTGCGGCGGCGGTGAGCGTGCGCGCGACGCGCAAGCTGTTCAC
GCAGACGCTGTGCTCCAACGCGTCGCAGCTGCCGGTGGTGAGGCTGTTCT
CGTCGTGCCCATGCTTCCTGGCGTACGAGATCACGTCCTCGTCGCGCGCC
ACGTGGGACGTGCTGCTGCTCAACTCGTCGTCGTACGTGCAGTGGCGGCG
CAGCAACTTCAGCGCGGCGCCGCGCTACGTGCGGCAACACTCCACGCTGA
Acggcagcagcggcggcggcggcgacggcgacggcagcgcggtgcggctg
gcgCCCACCAACGTGTTCGACAACGGGCAGTTTGCACTGGTGATCCGCGC
CGCCAGCGCGCGCCACGCGCAGTGCTTTGGCGGCGCGCAGTCGCCAGCGC
TGCGGCCGGCGCACGCGGTGTTCGAGCCCATGCCCACGCCGTGCGCCATC
CGCGCCGACGAGCCGTCCGCCGCGGCGCGCGCGCCTAAAATCGTGGGCGG
CAGCGCGGTGGGCGCACCGCCCAATTCGCTCGCGTCGTTTGGGTGGATGG
CGTTAATCTGGGAggcggaggcggacgcggcggcggcggcggcggcggcg
gcggcgCGCGCGCAGACGACTGACGCGCGCCCCATCTGCGGCGGCTCGCA
CTTTCGGCGCGGCTTTGTGGCCACCGCCGCGCACTGCGTGGCGGCGCGCG
CGCACGCGCCGCAGCTGCTGCGCGTGAGCATCGGCGCGGTGCCCGCGCAG
GCGCAGCGCGCGCAGCTGCTGCGCGTGCGCGCGGTGCACACGCACCCGCA
GTACGAGACGCTGCCCAGCAACGAGGCGCTGTTCGACGTGGCGGTGCTGG
AGCTACAAGACGACGCGCGCACCAACCACACCATCGCGCTCAACGACGAC
GCGCGCGCGCCGGCGGCGGGCGCCTTCGTCACCGCCGCCGGCTTCGGCTA
CATCTCCGAGCAGTGGCCCGCGCTGCCGCAGCCCAACCGGCTGCTGCGCG
TGGACGTGCCCGTCGTGCCCACCGCGCGCTGCCAGGCCGCCTTCCGCGCC
GTGCGCGCCGACGCGCACCTGTGCGCGGGCTACGCCGCCGGCGGCTGCGA
CAGCTGCCAGGCCGACTCGGGCGGCCCGCTGCGCCACGTGCGCGCGCGCG
GCGGCGAGCAGCGGCTGGTGGGCGTGGTGTCGTTCGGCGCCGGCTGCGCG
CGCGCGCGCTCGCCCGGCGTGTACACGCGCGTCAGCACCGTCGCCGCGTG
GATGCGCGCCGTCGCCGACGGCGCGCTGCGAGAGCGCGCCGAGCGCCAGC
GCCGCCGCTCCGTCGCCCTGGCTGCTGGCGGCGCCGTGTTTGCCGCCGTC
GTGCTCGCTGTGGCCGCCGTCGCTTTGGGCGCGTGGGGGTGGCGCCGCCG
CCGCCGCCGTCTGCGCGCCGCGCGCACGTCCGCCGCCTTGGCGCGTAGCG
ACGCGCCCAGCGAGACGGGCGTGTCGGCCTGA
back to top