Ggra1175.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1175.t1
Unique NameGgra1175.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:87207..88309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog246437.XP_006163078.1
Preferred namePRSS33
PFAMsTrypsin
Max annot lvl33208|Metazoa
KEGG koko:K08664,ko:K09628,ko:K09629
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009987,GO:0016787,GO:0017171,GO:0019538,GO:0023052,GO:0035556,GO:0043170,GO:0044238,GO:0044421,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070011,GO:0070528,GO:0071704,GO:0140096,GO:1901564
Evalue5.76e-18
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota,39U11@33154|Opisthokonta,3BDTB@33208|Metazoa,3D1JH@33213|Bilateria,48A3U@7711|Chordata,492P9@7742|Vertebrata,3JEEQ@40674|Mammalia,35CEW@314146|Euarchontoglires
Descriptionserine protease
COG categoryO
BRITEko00000,ko00537,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1175Ggra1175Gracilaria gracilis GNS1m malegenetig00000237_pilon 87207..88309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1175.t1Ggra1175.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 87207..88309 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1175.t1.start1Ggra1175.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 87207..87209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1175.t1.CDS1Ggra1175.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 87207..87363 +
Ggra1175.t1.CDS2Ggra1175.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000237_pilon 87459..87738 +
Ggra1175.t1.CDS3Ggra1175.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000237_pilon 87931..88309 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1175.t1.exon1Ggra1175.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 87207..87363 +
Ggra1175.t1.exon2Ggra1175.t1.exon2Gracilaria gracilis GNS1m maleexontig00000237_pilon 87459..87738 +
Ggra1175.t1.exon3Ggra1175.t1.exon3Gracilaria gracilis GNS1m maleexontig00000237_pilon 87931..88309 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1175.t1.intron1Ggra1175.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000237_pilon 87364..87458 +
Ggra1175.t1.intron2Ggra1175.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000237_pilon 87739..87930 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1175.t1.stop1Ggra1175.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 88307..88309 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1175.t1 ID=Ggra1175.t1|Name=Ggra1175.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MPVCAFTFPLLLAAAAAAAAAAAAAAVSPRIVGGQRELEPSVFMWQAAFE
HAGSVICGGTLLTHNKVLTAAHCRIRTSPPAARSVVRVGAPDLSRAARAF
AVVATYRHPAFARGARGQPLHDLMVVQFHNGDQSLGRWAPRLNANACNGD
SGGPLWSRAAHNRSELLLLGVVSFGYGCANAHAPGVYTRVSEYVPWITRV
AAAPDAPFGAAAAAAAAAEPPQRLNWTVVAAAATASVALVAVLLVLFVYV
RCLRADEHGDDDDDDEALPRK*
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spliced messenger RNA

>Ggra1175.t1 ID=Ggra1175.t1|Name=Ggra1175.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000237_pilon:87207..88309+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTGTGCGCCTTCACCTTTCCGCTGCTACTGgccgccgccgccgc
cgccgccgccgccgccgccgccgccgccgTATCGCCGCGCATCGTGGGCG
GCCAGCGCGAGCTGGAGCCGTCCGTGTTCATGTGGCAAGCCGCCTTCGAG
CACGCAGGCTCCGTCATCTGCGGCGGCACGCTGCTCACGCACAACAAGGT
GCTCACGgcggcgcactgccgcatccgcacgtcgccgccggcagcgcgca
gcgtagttcgcgtgggcgcgcccgacctgtcgcgcgccgcgcgcgcCTTC
GCCGTGGTGGCCACCTACCGCCACCCGGCGTTTGCGCGCGGCGCGCGCGG
ACAGCCGCTGCACGACCTCATGGTGGTGCAGTTCCACAACGGCGACCAGT
CGCTGGGGCGCTGGGCGCCGCGTCTCAACGCCAACGCCTGTAACGGCGAC
TCGGGCGGGCCGCTTTGGAGCCGCGCCGCGCACAATCGCAGCGAGCTGCT
GCTGCTGGGCGTGGTGTCGTTTGGCTATGGCTGCGCTAACGCCCACGCGC
CCGGCGTGTACACGCGCGTGTCCGAGTACGTGCCGTGGATCACGCGCGTG
GCCGCTGCGCCCGATGCGCCGTTcggcgcggcggcggcggcggcggcggc
ggcggAGCCGCCGCAACGGCTCAATTGGACGGTGGTGGCCGCCGCCGCCA
CCGCTTCCGTGGCGCTGGTGGCCGTGCTGCTCGTGCTGTTTGTGTACGTG
CGCTGCTTGCGCGCCgatgagcatggtgatgatgatgatgatgatgaGGC
GCTGCCTCGCAAGTGA
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protein sequence of Ggra1175.t1

>Ggra1175.t1 ID=Ggra1175.t1|Name=Ggra1175.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MPVCAFTFPLLLAAAAAAAAAAAAAAVSPRIVGGQRELEPSVFMWQAAFE
HAGSVICGGTLLTHNKVLTAAHCRIRTSPPAARSVVRVGAPDLSRAARAF
AVVATYRHPAFARGARGQPLHDLMVVQFHNGDQSLGRWAPRLNANACNGD
SGGPLWSRAAHNRSELLLLGVVSFGYGCANAHAPGVYTRVSEYVPWITRV
AAAPDAPFGAAAAAAAAAEPPQRLNWTVVAAAATASVALVAVLLVLFVYV
RCLRADEHGDDDDDDEALPRK*
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mRNA from alignment at tig00000237_pilon:87207..88309+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1175.t1 ID=Ggra1175.t1|Name=Ggra1175.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1103bp|location=Sequence derived from alignment at tig00000237_pilon:87207..88309+ (Gracilaria gracilis GNS1m male)
ATGCCCGTGTGCGCCTTCACCTTTCCGCTGCTACTGgccgccgccgccgc
cgccgccgccgccgccgccgccgccgccgTATCGCCGCGCATCGTGGGCG
GCCAGCGCGAGCTGGAGCCGTCCGTGTTCATGTGGCAAGCCGCCTTCGAG
CACGCAGGTACGTTTCGAAAAAAGCGCTGCTGCGTGCGTGTGTATCAACG
CAGTTACTCACCCACACAGCGTCGCGCGTGTGTGCTTTCCGCGCGCCAAC
AGGCTCCGTCATCTGCGGCGGCACGCTGCTCACGCACAACAAGGTGCTCA
CGgcggcgcactgccgcatccgcacgtcgccgccggcagcgcgcagcgta
gttcgcgtgggcgcgcccgacctgtcgcgcgccgcgcgcgcCTTCGCCGT
GGTGGCCACCTACCGCCACCCGGCGTTTGCGCGCGGCGCGCGCGGACAGC
CGCTGCACGACCTCATGGTGGTGCAGTTCCACAACGGCGACCAGTCGCTG
GGGCGCTGGGCGCCGCGTCTCAACGCCAACGCGTCGCTTCCAAcgcgcgc
gcagccgctgcttgccagcggctacgggcgcacgcgcggcggcgcgcgcc
gactgccgggccacctgcgctcggcgcgcgtgccgctggtggcggcgcgt
gagtgcgcgcgcgcgtacggcgacggcgtgagtgagcgcgcgcATATCTG
CGCGGGCGACGCCATGTTCGACAGCTGTAACGGCGACTCGGGCGGGCCGC
TTTGGAGCCGCGCCGCGCACAATCGCAGCGAGCTGCTGCTGCTGGGCGTG
GTGTCGTTTGGCTATGGCTGCGCTAACGCCCACGCGCCCGGCGTGTACAC
GCGCGTGTCCGAGTACGTGCCGTGGATCACGCGCGTGGCCGCTGCGCCCG
ATGCGCCGTTcggcgcggcggcggcggcggcggcggcggcggAGCCGCCG
CAACGGCTCAATTGGACGGTGGTGGCCGCCGCCGCCACCGCTTCCGTGGC
GCTGGTGGCCGTGCTGCTCGTGCTGTTTGTGTACGTGCGCTGCTTGCGCG
CCgatgagcatggtgatgatgatgatgatgatgaGGCGCTGCCTCGCAAG
TGA
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Coding sequence (CDS) from alignment at tig00000237_pilon:87207..88309+

>Ggra1175.t1 ID=Ggra1175.t1|Name=Ggra1175.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000237_pilon:87207..88309+ (Gracilaria gracilis GNS1m male)
ATGCCCGTGTGCGCCTTCACCTTTCCGCTGCTACTGgccgccgccgccgc
cgccgccgccgccgccgccgccgccgccgTATCGCCGCGCATCGTGGGCG
GCCAGCGCGAGCTGGAGCCGTCCGTGTTCATGTGGCAAGCCGCCTTCGAG
CACGCAGGCTCCGTCATCTGCGGCGGCACGCTGCTCACGCACAACAAGGT
GCTCACGgcggcgcactgccgcatccgcacgtcgccgccggcagcgcgca
gcgtagttcgcgtgggcgcgcccgacctgtcgcgcgccgcgcgcgcCTTC
GCCGTGGTGGCCACCTACCGCCACCCGGCGTTTGCGCGCGGCGCGCGCGG
ACAGCCGCTGCACGACCTCATGGTGGTGCAGTTCCACAACGGCGACCAGT
CGCTGGGGCGCTGGGCGCCGCGTCTCAACGCCAACGCCTGTAACGGCGAC
TCGGGCGGGCCGCTTTGGAGCCGCGCCGCGCACAATCGCAGCGAGCTGCT
GCTGCTGGGCGTGGTGTCGTTTGGCTATGGCTGCGCTAACGCCCACGCGC
CCGGCGTGTACACGCGCGTGTCCGAGTACGTGCCGTGGATCACGCGCGTG
GCCGCTGCGCCCGATGCGCCGTTcggcgcggcggcggcggcggcggcggc
ggcggAGCCGCCGCAACGGCTCAATTGGACGGTGGTGGCCGCCGCCGCCA
CCGCTTCCGTGGCGCTGGTGGCCGTGCTGCTCGTGCTGTTTGTGTACGTG
CGCTGCTTGCGCGCCgatgagcatggtgatgatgatgatgatgatgaGGC
GCTGCCTCGCAAGTGA
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