Ggra1174.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1174.t1
Unique NameGgra1174.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:86057..86981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7176.CPIJ014709-PA
PFAMszf-AD,zf-C2H2,zf-C2H2_4,zf-C2H2_6,zf-met
Max annot lvl33208|Metazoa
KEGG koko:K09228,ko:K09229
Evalue1.63e-10
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,38BZ9@33154|Opisthokonta,3BA9A@33208|Metazoa,3CT35@33213|Bilateria,426PI@6656|Arthropoda,3SWQT@50557|Insecta,4569D@7147|Diptera,45K0B@7148|Nematocera
DescriptionZinc finger, C2H2 type
COG categoryS
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1174Ggra1174Gracilaria gracilis GNS1m malegenetig00000237_pilon 86057..86981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1174.t1Ggra1174.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 86057..86981 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1174.t1.start1Ggra1174.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 86057..86059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1174.t1.CDS1Ggra1174.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 86057..86571 +
Ggra1174.t1.CDS2Ggra1174.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000237_pilon 86951..86981 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1174.t1.exon1Ggra1174.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 86057..86571 +
Ggra1174.t1.exon2Ggra1174.t1.exon2Gracilaria gracilis GNS1m maleexontig00000237_pilon 86951..86981 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1174.t1.intron1Ggra1174.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000237_pilon 86572..86950 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1174.t1.stop1Ggra1174.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 86979..86981 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1174.t1 ID=Ggra1174.t1|Name=Ggra1174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=182bp
MSNRESLRLPPLHYSRQTSSFNVLLPPLSSSRTAGARLPPIAHAASRVAP
LHARQLPAAPPALPAAPRRPQPIKKTVCTTQGVREVYACPFDNCARTSTE
HSNLKAHMRMHTGERPYSCSAPGCKKNFRWKSSLTYHEKAIHTSVKPYKC
APCRKHFVEKRKYKLHLQLCPSPVAPRLRHE*
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spliced messenger RNA

>Ggra1174.t1 ID=Ggra1174.t1|Name=Ggra1174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000237_pilon:86057..86981+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
aTGTCCAATCGCGAGTCGCTACGTCTACCGCCGCTGCACTACTCGCGACA
GACGTCGTCGTTCAACGTGCTGCTGCCGCCGCTGTCGTCGTCGCGCACGG
CGGGCGCGCGGCTGCCGCCCATCGCGCACGCGGCGTCGCGCGTGGCGCCG
CTACACGCGCGGCAGCTGCCCGCAGCGCCGCCGGCGCTGCCGGCGGCGCC
GCGCCGCCCGCAGCCCATCAAGAAGACGGTGTGCACGACGCAGGGCGTGC
GCGAGGTGTACGCATGCCCGTTCGACAACTGCGCGCGCACCAGCACGGAA
CACTCCAACCTGAAGGCGCACATGAGGATGCACACGGGCGAGCGCCCGTA
CAGCTGCTCGGCGCCCGGCTGCAAGAAGAACTTTCGCTGGAAGTCCAGCC
TCACGTACCACGAGAAGGCCATCCACACGTCGGTGAAGCCGTACAAGTGC
GCGCCGTGCAGAAAGCACTTTGTGGAGAAAAGAAAGTACAAGCTGCACCT
GCAGCTGTGCCCGTCCCCCGTCGCGCCTCGCCTGCGCCATGAGTGA
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protein sequence of Ggra1174.t1

>Ggra1174.t1 ID=Ggra1174.t1|Name=Ggra1174.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=182bp
MSNRESLRLPPLHYSRQTSSFNVLLPPLSSSRTAGARLPPIAHAASRVAP
LHARQLPAAPPALPAAPRRPQPIKKTVCTTQGVREVYACPFDNCARTSTE
HSNLKAHMRMHTGERPYSCSAPGCKKNFRWKSSLTYHEKAIHTSVKPYKC
APCRKHFVEKRKYKLHLQLCPSPVAPRLRHE*
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mRNA from alignment at tig00000237_pilon:86057..86981+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1174.t1 ID=Ggra1174.t1|Name=Ggra1174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=925bp|location=Sequence derived from alignment at tig00000237_pilon:86057..86981+ (Gracilaria gracilis GNS1m male)
aTGTCCAATCGCGAGTCGCTACGTCTACCGCCGCTGCACTACTCGCGACA
GACGTCGTCGTTCAACGTGCTGCTGCCGCCGCTGTCGTCGTCGCGCACGG
CGGGCGCGCGGCTGCCGCCCATCGCGCACGCGGCGTCGCGCGTGGCGCCG
CTACACGCGCGGCAGCTGCCCGCAGCGCCGCCGGCGCTGCCGGCGGCGCC
GCGCCGCCCGCAGCCCATCAAGAAGACGGTGTGCACGACGCAGGGCGTGC
GCGAGGTGTACGCATGCCCGTTCGACAACTGCGCGCGCACCAGCACGGAA
CACTCCAACCTGAAGGCGCACATGAGGATGCACACGGGCGAGCGCCCGTA
CAGCTGCTCGGCGCCCGGCTGCAAGAAGAACTTTCGCTGGAAGTCCAGCC
TCACGTACCACGAGAAGGCCATCCACACGTCGGTGAAGCCGTACAAGTGC
GCGCCGTGCAGAAAGCACTTTGTGGAGAAAAGAAAGTACAAGCTGCACCT
GCAGCTGTGCCCGTCGTCCGTGGCGCGCCGCGCGCCCTTGCCGTTGTCGA
Tgtcgtcatcgtcgtcgtcgtcgtcgtcgtcgtcggcggcggcggctgtg
gcggcggcggcagcggcagcggcgacggcgcgccgttagcggcgctggcg
CCCATTAACAACAGCACGCCGTGTAAAAGCTCTGGTACATACATATCTAC
AACAAGCAACTTTATTTTTATTTTTGTACTGTATCCATACCATCTCTAGC
AgcgcgcgcgcgcgcgcgcaccgcgcAGCCGGCGGCTGTGCGTGCgcgcg
tgcgcgtgcgcgtgcgcgtgcgcgtgcgcgtgcgAGCCACGCGCGCCACC
GCTTGCAGTTGTGTACCTTCATTTCTTCTTTGCTGTTTTTTCAGCCCCGT
CGCGCCTCGCCTGCGCCATGAGTGA
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Coding sequence (CDS) from alignment at tig00000237_pilon:86057..86981+

>Ggra1174.t1 ID=Ggra1174.t1|Name=Ggra1174.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00000237_pilon:86057..86981+ (Gracilaria gracilis GNS1m male)
aTGTCCAATCGCGAGTCGCTACGTCTACCGCCGCTGCACTACTCGCGACA
GACGTCGTCGTTCAACGTGCTGCTGCCGCCGCTGTCGTCGTCGCGCACGG
CGGGCGCGCGGCTGCCGCCCATCGCGCACGCGGCGTCGCGCGTGGCGCCG
CTACACGCGCGGCAGCTGCCCGCAGCGCCGCCGGCGCTGCCGGCGGCGCC
GCGCCGCCCGCAGCCCATCAAGAAGACGGTGTGCACGACGCAGGGCGTGC
GCGAGGTGTACGCATGCCCGTTCGACAACTGCGCGCGCACCAGCACGGAA
CACTCCAACCTGAAGGCGCACATGAGGATGCACACGGGCGAGCGCCCGTA
CAGCTGCTCGGCGCCCGGCTGCAAGAAGAACTTTCGCTGGAAGTCCAGCC
TCACGTACCACGAGAAGGCCATCCACACGTCGGTGAAGCCGTACAAGTGC
GCGCCGTGCAGAAAGCACTTTGTGGAGAAAAGAAAGTACAAGCTGCACCT
GCAGCTGTGCCCGTCCCCCGTCGCGCCTCGCCTGCGCCATGAGTGA
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