Ggra1135.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1135.t1
Unique Name	Ggra1135.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000140_pilon	contig	tig00000140_pilon:54070..54918 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005849549.1
PFAMs	RNA_pol_Rpc34
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC02795
KEGG ko	ko:K03025
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG Module	M00181
Evalue	1e-38
EggNOG OGs	COG5111@1\|root,KOG3233@2759\|Eukaryota,37THT@33090\|Viridiplantae,34IYH@3041\|Chlorophyta
Description	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1135	Ggra1135	Gracilaria gracilis GNS1m male	gene	tig00000140_pilon 54070..54918 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1135.t1.start1	Ggra1135.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000140_pilon 54070..54072 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1135.t1.CDS1	Ggra1135.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000140_pilon 54070..54918 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1135.t1.exon1	Ggra1135.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000140_pilon 54070..54918 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1135.t1.stop1	Ggra1135.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000140_pilon 54916..54918 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1135.t1	Ggra1135.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000140_pilon 54070..54918 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000140_pilon:54070..54918+
coding sequence from alignment at tig00000140_pilon:54070..54918+

mRNA sequence

>Ggra1135.t1 ID=Ggra1135.t1|Name=Ggra1135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=283bp
MPDPALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELL
RNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIE
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKA
YIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDS
VTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVT
NAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT*

spliced messenger RNA

>Ggra1135.t1 ID=Ggra1135.t1|Name=Ggra1135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000140_pilon:54070..54918+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGACCCCGCATTGCGAGCGTTGCAGACCATGATACTTCGCGTATG
CCAGTCCCGCCCTGATGGTTTAACAGACGCCGAAATAGTCCAGCATCTGG
ACAAAAATGTGAAACCCAAGCATTGTCTCGACTCATACAATGAATTGCTT
CGAAACGGACGGTCGAAGCTTTTGAAGAAAAGCGTTGGCGAAGAGGCGCA
GAAGAAATATGTCGTCGTCTACCAGTGGGTAAGCCTGAAAGATGCCGAGA
AATTTCGTGGACTTGATGCTGCTGAGAGAATGGTGGATGATATGATTGAG
CGATCTGGTCAAAATGGCGTTACAAAACGGGACATGAAGTTCAGGACGAA
CATTCAAAACCCTTCTGAGCTAAAGCAAATCGTGGAACGACTCATTGCGC
GGGGACTGGTTAAAGAGATCAAATCTGTTCAGGGTGCAAACAAGAAGGCT
TACATTGCATCCGGTGTGGAACCATCAACAGCTCACACTAGTGGTCCTTG
GTACAACGATGAGCAAGAGTTTGACACAATGTTCATAGATACCATCTACG
CGCAGGTGGTTGGATACATGTTTTCGATGGAGTACGTCACTGTTGACAGC
GTCACAGAGTACGTGGCGGACTTGCACATTTCAACTGAAACCCTTTCGAA
AAGTGATATACGACAGTTGATGATGACCATGCTGTATGATTCGGCTATTG
AGCAATGTACTGGAAGGAATGATGGGGGAGAGTACTTCAGAATAGTTACA
AATGCGCCTGCTGTGAATCATCTTTCGTCTATCCCCTGTGGTTTATGCCC
AGTGTTTCATGATTGTAGCCCTGATGGCATTATTTCTTCGAAGACATGA

protein sequence of Ggra1135.t1

>Ggra1135.t1 ID=Ggra1135.t1|Name=Ggra1135.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=283bp
MPDPALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELL
RNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIE
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKA
YIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDS
VTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVT
NAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT*

mRNA from alignment at tig00000140_pilon:54070..54918+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1135.t1 ID=Ggra1135.t1|Name=Ggra1135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000140_pilon:54070..54918+ (Gracilaria gracilis GNS1m male)
ATGCCAGACCCCGCATTGCGAGCGTTGCAGACCATGATACTTCGCGTATG
CCAGTCCCGCCCTGATGGTTTAACAGACGCCGAAATAGTCCAGCATCTGG
ACAAAAATGTGAAACCCAAGCATTGTCTCGACTCATACAATGAATTGCTT
CGAAACGGACGGTCGAAGCTTTTGAAGAAAAGCGTTGGCGAAGAGGCGCA
GAAGAAATATGTCGTCGTCTACCAGTGGGTAAGCCTGAAAGATGCCGAGA
AATTTCGTGGACTTGATGCTGCTGAGAGAATGGTGGATGATATGATTGAG
CGATCTGGTCAAAATGGCGTTACAAAACGGGACATGAAGTTCAGGACGAA
CATTCAAAACCCTTCTGAGCTAAAGCAAATCGTGGAACGACTCATTGCGC
GGGGACTGGTTAAAGAGATCAAATCTGTTCAGGGTGCAAACAAGAAGGCT
TACATTGCATCCGGTGTGGAACCATCAACAGCTCACACTAGTGGTCCTTG
GTACAACGATGAGCAAGAGTTTGACACAATGTTCATAGATACCATCTACG
CGCAGGTGGTTGGATACATGTTTTCGATGGAGTACGTCACTGTTGACAGC
GTCACAGAGTACGTGGCGGACTTGCACATTTCAACTGAAACCCTTTCGAA
AAGTGATATACGACAGTTGATGATGACCATGCTGTATGATTCGGCTATTG
AGCAATGTACTGGAAGGAATGATGGGGGAGAGTACTTCAGAATAGTTACA
AATGCGCCTGCTGTGAATCATCTTTCGTCTATCCCCTGTGGTTTATGCCC
AGTGTTTCATGATTGTAGCCCTGATGGCATTATTTCTTCGAAGACATGA

Coding sequence (CDS) from alignment at tig00000140_pilon:54070..54918+

>Ggra1135.t1 ID=Ggra1135.t1|Name=Ggra1135.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00000140_pilon:54070..54918+ (Gracilaria gracilis GNS1m male)
ATGCCAGACCCCGCATTGCGAGCGTTGCAGACCATGATACTTCGCGTATG
CCAGTCCCGCCCTGATGGTTTAACAGACGCCGAAATAGTCCAGCATCTGG
ACAAAAATGTGAAACCCAAGCATTGTCTCGACTCATACAATGAATTGCTT
CGAAACGGACGGTCGAAGCTTTTGAAGAAAAGCGTTGGCGAAGAGGCGCA
GAAGAAATATGTCGTCGTCTACCAGTGGGTAAGCCTGAAAGATGCCGAGA
AATTTCGTGGACTTGATGCTGCTGAGAGAATGGTGGATGATATGATTGAG
CGATCTGGTCAAAATGGCGTTACAAAACGGGACATGAAGTTCAGGACGAA
CATTCAAAACCCTTCTGAGCTAAAGCAAATCGTGGAACGACTCATTGCGC
GGGGACTGGTTAAAGAGATCAAATCTGTTCAGGGTGCAAACAAGAAGGCT
TACATTGCATCCGGTGTGGAACCATCAACAGCTCACACTAGTGGTCCTTG
GTACAACGATGAGCAAGAGTTTGACACAATGTTCATAGATACCATCTACG
CGCAGGTGGTTGGATACATGTTTTCGATGGAGTACGTCACTGTTGACAGC
GTCACAGAGTACGTGGCGGACTTGCACATTTCAACTGAAACCCTTTCGAA
AAGTGATATACGACAGTTGATGATGACCATGCTGTATGATTCGGCTATTG
AGCAATGTACTGGAAGGAATGATGGGGGAGAGTACTTCAGAATAGTTACA
AATGCGCCTGCTGTGAATCATCTTTCGTCTATCCCCTGTGGTTTATGCCC
AGTGTTTCATGATTGTAGCCCTGATGGCATTATTTCTTCGAAGACATGA