Ggra1135.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1135.t1
Unique NameGgra1135.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length283
Homology
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A2V3J6Q7 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q7_9FLOR)

HSP 1 Score: 451 bits (1159), Expect = 3.870e-158
Identity = 224/282 (79.43%), Postives = 246/282 (87.23%), Query Frame = 0
Query:    1 MPDPALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            MPDP LRALQT ILR+CQ+ P+GLTD EIVQ LD +VKPKH LDSYNELLR GR KLLKK+VGE   KK VVVYQWVSLKDAEKFRGLDA ERMV DMIERSGQNGVTKRDMKFRTNIQN SELKQIVERLIARGLVKEIKSVQGANKK YIAS VEPS AHT GPWYND++EFDT FI+TIYA ++ YM +ME+VT++SVT+YVADL IS E L+KSDIRQLMMTMLYDS IE+C GR DGG+Y+R  T+ P VNHLSS+PCG CPVFHDCSPDG+IS KT
Sbjct:    1 MPDPLLRALQTTILRICQTCPEGLTDGEIVQRLDTDVKPKHRLDSYNELLRTGRLKLLKKTVGEGPTKKDVVVYQWVSLKDAEKFRGLDATERMVYDMIERSGQNGVTKRDMKFRTNIQNTSELKQIVERLIARGLVKEIKSVQGANKKVYIASEVEPSAAHTGGPWYNDDKEFDTEFIETIYAHILSYMGTMEFVTIESVTDYVADLKISNEDLTKSDIRQLMMTMLYDSVIEECEGRKDGGDYYRRATSTPGVNHLSSVPCGSCPVFHDCSPDGVISPKT 282          
BLAST of Ggra1135.t1 vs. uniprot
Match: R7QCX5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX5_CHOCR)

HSP 1 Score: 315 bits (807), Expect = 5.910e-105
Identity = 153/259 (59.07%), Postives = 195/259 (75.29%), Query Frame = 0
Query:   24 LTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            +TD E+   L  + K K  + +YN+LL  GR +L  +  G    +K  V+YQWVS +DAEKF+GLDA++RMV D++ + GQNG TK++MKFRTNIQ+ +ELKQI+ERLI+R L+KEIKSVQG NK+ YI +G+EPST HT GPWYND+QEFDT+FI+ IY QV+ ++    YVTVD VT YVA++ +S E LS SDI+ LM TMLYD+ IE C G+ DG EYFR V   PAVNHL+SIPCG CPVFHDC P G+IS +T
Sbjct:    1 MTDKEVTAKLHFDTKAKIRIAAYNKLLAKGRIRLAARVTGTGENRKQQVLYQWVSAEDAEKFKGLDASDRMVLDLVVKGGQNGATKKEMKFRTNIQSNTELKQILERLISRNLIKEIKSVQGTNKRIYIKAGLEPSTLHTGGPWYNDDQEFDTVFIEAIYEQVLAFIKKTNYVTVDQVTSYVAEIKLSNEELSHSDIKSLMNTMLYDTVIELCEGKGDGHEYFRHVQPTPAVNHLASIPCGSCPVFHDCVPGGVISPQT 259          
BLAST of Ggra1135.t1 vs. uniprot
Match: E1Z933 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z933_CHLVA)

HSP 1 Score: 146 bits (368), Expect = 1.050e-38
Identity = 88/277 (31.77%), Postives = 152/277 (54.87%), Query Frame = 0
Query:    7 RALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRI-VTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            R ++ +IL VC+  P+G+ D  +   L  +V       + N LL + + ++L       +      +Y+  ++ DA +F+GL A + +V   I+ +G  G+  RDMK RTN+Q P ++ +I++ L  R LVK IKSVQ A++K Y+   +EP+   T GPWY  +  FD+ FI  +    + Y+ +    T+  +  ++ +  IS + L + D+ +++ T+  D  IE   G  DG  ++R+ + + P     +SIPCG+CPVF++C   G IS +T
Sbjct:    3 RKVEELILTVCRKHPEGVQDTALEAELP-SVAVNDRAVAINSLLASLKLQILVNPADPSSH-----IYKASAVGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQP-KINKILKTLEERCLVKSIKSVQNASRKVYMLYELEPAKELTGGPWYGPDA-FDSEFITVLQEATMSYINTKGDATLADIVRFIKETGISKQALQEDDVERIINTLECDGKIEGVEGDEDGLPHYRLPLMSIPEATPFTSIPCGVCPVFNECVEGGKISPQT 271          
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A061SD36 (DNA-directed RNA polymerase III subunit C34 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SD36_9CHLO)

HSP 1 Score: 144 bits (363), Expect = 3.870e-37
Identity = 86/277 (31.05%), Postives = 150/277 (54.15%), Query Frame = 0
Query:    4 PALRALQTMILRVCQSRPDGLTDAEIVQHLDK-NVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIIS 279
            P+    +  I+ +C+   +GL++A + + L   ++  K    + N LL+  R ++ K   G        +VY+ + ++DA KF+GL   E +V  +I+++G  G+  +DMKF++N+Q P ++ +I++ L  R LVK ++SV G NKK Y+   +EPS   T G WY  EQ+FD+ FI+ +      ++     VT+  V E++         L + D+  ++ +++YD  I+     +D   +   +   P  +  +SIPCG+CPVF  C PDG IS
Sbjct:   86 PSSGTAEQGIIDLCRKHSEGLSEAVLDKELSGFDISAKAA--AINSLLQQQRLQIFKSPDGS-------LVYKEIKVEDAAKFKGLGPQEMLVYQLIKQTGNKGMWTKDMKFQSNLQQP-QITKILKTLEGRNLVKSVRSVTGGNKKVYMLYELEPSRELTGGAWYT-EQKFDSEFIEALREACSQFIHKQGDVTLGDVVEFIHSRGFVKVDLREEDVLSVINSLVYDGRIDSVDDEDDVEHFRPAMLKIPRQSAFTSIPCGVCPVFAQCRPDGPIS 351          
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A2P6V1J4 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1J4_9CHLO)

HSP 1 Score: 142 bits (357), Expect = 4.940e-37
Identity = 88/278 (31.65%), Postives = 150/278 (53.96%), Query Frame = 0
Query:    7 RALQTMILRVCQSRPDGLTDAEIVQHL-DKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVT-NAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            R ++ M+L VC+  P+G+ D  +   L D +V  +    + N LL + + ++L       +      +Y+  +  D  +F+GL A + +V   I+ +G  G+  RDMK RTN+Q P   K I++ L  R LVK +KSVQ A++K Y+   +EP+   T GPW+  +  FD+ F+  +    + Y+ S    ++  +  ++ +  IS + L + D+ +++ T+ YD  IEQ    +DG  ++R++    P    L+SIPCG+CPVF +C   G IS  T
Sbjct:    3 RKVEEMVLAVCRKHPEGVADTVLESELPDVSVNDRAL--AINSLLSSMKLQILVNPADPSSH-----IYKASTTGDTARFKGLTAEDMLVYQCIQAAGNIGIWTRDMKQRTNLQQPKVTK-ILKALEERLLVKSVKSVQNASRKVYMLYELEPAKELTGGPWFGPDA-FDSEFVAVLQETTLSYIKSKGQPSLADIVRFIKETGISKQALQEDDVERIINTLEYDGKIEQIE-EDDGDRHYRMMLMRIPESTPLTSIPCGVCPVFSECVEGGKISPAT 270          
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A1Y1IK16 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI)

HSP 1 Score: 138 bits (347), Expect = 1.670e-35
Identity = 90/286 (31.47%), Postives = 145/286 (50.70%), Query Frame = 0
Query:    2 PDPALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRN-----DGGEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            PD A+  L+  I  +CQ    G+T   +   L          D   E L +  + LL +   +   +   + Y+ V+ +D  +FRGL + E +V  +I+ S   G+  RD+K R+N+Q P ++ +I++ L  R L+K +KSV   N+K Y+   +EPS   T G WY  EQEFD  FI  +   V  ++ +   VT++ +  +V     +   L   D +Q+  T++YD  +E+ +  +     D   Y     + P  N  +SIPCG+CPV H+CS DG+IS  T
Sbjct:    6 PDSAVFRLEEAIANLCQESDGGVTQKMLQDELP---------DIPLEELGSALNVLLSRHQLQMYTQASTLYYKPVNQEDRVRFRGLGSEEMLVYQIIQASQNMGIWTRDLKLRSNLQQP-QITKIIKTLEGRRLIKAVKSVASKNRKVYMLYEIEPSREITGGAWYT-EQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEISEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHECSDDGLISPAT 280          
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A7M7RE84 (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RE84_STRPU)

HSP 1 Score: 136 bits (343), Expect = 1.050e-34
Identity = 89/303 (29.37%), Postives = 151/303 (49.83%), Query Frame = 0
Query:    4 PALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMF-----------------SMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDG-------GEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            P    L+  IL +C+  PDG+ D+ + + L  NV  +  + + N LL +G+  L+K S          +VY+        K +G D  ER+V  +IE+SG  G+  RD++ ++N+Q  ++L +I++ L +R L+K +KSV  A KKAY+   + P  + T G WY+D QEF++ F++ +  Q   ++                  +  +V+ + V +++ +L IS   LS  DI  ++ T++YD  +E       G        + +R +        L   PCG+CPVF+ C   G IS  T
Sbjct:   10 PDAMNLEERILELCKQNPDGIADSTLQKELP-NVDTRQRVSAVNRLLSSGKIDLVKTS--------NELVYRLKDPGVVSKIKGADNQERLVYQIIEQSGNKGIWTRDIRLKSNLQL-TQLNKILKNLESRKLIKAVKSVGAARKKAYMLFNLTPDPSVTGGTWYSD-QEFESEFVEVLNQQCFKFLQQKVESVSALQLDPLLKRNRSFVSPEEVWKFITELRISKVDLSVDDINTILNTLIYDGKVEMTISAGAGTSSSDSSSKLYRAIQPLTQPTGLMRSPCGVCPVFNQCYEGGAISPST 301          
BLAST of Ggra1135.t1 vs. uniprot
Match: I0Z1U2 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1U2_COCSC)

HSP 1 Score: 134 bits (337), Expect = 3.460e-34
Identity = 84/275 (30.55%), Postives = 146/275 (53.09%), Query Frame = 0
Query:    9 LQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVTNA-PAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            ++  IL +C+  P+GL +A + Q++    +      + N LL   R ++L+            +VYQ V  ++A K +GL A + +V   I ++G  G+  +D+K RTN+Q P ++ +I++ L  R LVK +KSV   ++K YI   +EP+   T G WY   Q+FD  FI  +      Y+ +    T++ V ++V     S   L  +D+  ++ T+ +D  +E  +  +D GE +R   +  P  +  +S+PCG+CPV ++CS  G+IS  T
Sbjct:    5 IEESILALCRQHPEGLPEAVLEQYIPATQRT----TAMNNLLAKHRLRILQHPRDNS------LVYQEVIQEEAAKLKGLSAEDLLVYQHIAQAGDTGIWTKDLKNRTNLQQP-QITKILKNLDQRSLVKSVKSVINPSRKVYILFELEPARELTGGAWYTG-QDFDAEFIQVLQQACHKYIENEGVATLEEVADFVRTKGFSRVELRDADVLCILRTLEFDGLVE--SSLSDDGEVYRPARHVVPKTSPFTSMPCGVCPVINECSDGGVISPST 265          
BLAST of Ggra1135.t1 vs. uniprot
Match: C1EAY3 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EAY3_MICCC)

HSP 1 Score: 134 bits (338), Expect = 5.210e-34
Identity = 85/299 (28.43%), Postives = 154/299 (51.51%), Query Frame = 0
Query:   10 QTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQ-------------CTGRNDGGE-------------YFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            +  IL  C+  P+G+ D ++ Q +  ++       + N LL + + ++ K   G+       +VY+ V  ++A KFRGL + + +V  +I++SG +G+  +++K R+N+   +++ +I + L +R L+K +KSV   N+K Y+   +EPS   T G WY  E E+D  FI+ +  Q   ++     VT+D V+++V    +S   L K ++ Q++ T++YD  ++Q               G  D G              Y       P  +  +S+PCG+CPVF++C P G+IS +T
Sbjct:    3 EAAILEQCRLHPEGIPDQDLAQKIS-HIPVNDRAQAINSLLSSRKLQIYKD--GD------TIVYRMVMQEEAVKFRGLASEDLLVYQIIQQSGNSGIWTKELKQRSNLAQ-AQITKIFKSLESRKLIKAVKSVSQQNRKVYMLYELEPSREITGGAWYT-EHEYDAEFINVLREQCEKFIVGQGKVTLDQVSDFVKKTKLSHVELGKEEVLQIVNTLVYDGKVDQFDEHEKGEGDADDAKGDGDVGNDERDYGDGEKVTYYVPAAYPVPEKSAFTSVPCGVCPVFNECRPGGLISPET 290          
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A8C6SEG5 (DNA-directed RNA polymerase III subunit RPC6 n=5 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6SEG5_9GOBI)

HSP 1 Score: 134 bits (337), Expect = 8.720e-34
Identity = 90/300 (30.00%), Postives = 155/300 (51.67%), Query Frame = 0
Query:    9 LQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSM-----------------EYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYD--------SAIEQCTGRNDGG-EYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
            L   I  +C+  P G+TD  ++Q+   +++P+    + N+LL  G+ +LL+ S G        ++Y+    + + K +G D  E++V  +IE +G  G+  RD++F++N+   +E+ +I++ L ++ L+K +KSV  + KK Y+   V+P  + T G WY+D Q+F++ F++ +  Q   ++ S                   + T   V +Y+++L IS   LS  DI  ++ T++YD        +A E   G  DG  + +R V        L   PCGLCPVF DCS  G IS  T
Sbjct:   17 LDLSIKDLCEQFPHGITD-HVIQNDMPHLEPQQRATAINKLLSVGQLELLRNSSG--------LLYRLKDSQGSSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRFKSNLPL-TEINKILKNLESKKLIKAVKSVAASKKKVYMLYNVQPDRSVTGGAWYSD-QDFESEFVEVLNQQCFKFLQSKAEVARDGKHSPMVQRNSSFATSHEVWKYISELGISKVELSMEDIETILNTLIYDGKAEMTVIAAKEGAVGSVDGQMKLYRGVNAIATATGLVKTPCGLCPVFDDCSDGGEISPST 305          
The following BLAST results are available for this feature:
BLAST of Ggra1135.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q73.870e-15879.43DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
R7QCX55.910e-10559.07Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
E1Z9331.050e-3831.77DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A061SD363.870e-3731.05DNA-directed RNA polymerase III subunit C34 n=3 Ta... [more]
A0A2P6V1J44.940e-3731.65DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A1Y1IK161.670e-3531.47DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A7M7RE841.050e-3429.37DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
I0Z1U23.460e-3430.55DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
C1EAY35.210e-3428.43DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A8C6SEG58.720e-3430.00DNA-directed RNA polymerase III subunit RPC6 n=5 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 7..63
e-value: 3.1E-6
score: 28.8
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 64..147
e-value: 1.2E-16
score: 62.2
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 8..189
e-value: 1.9E-31
score: 109.7
coord: 193..281
e-value: 5.6E-10
score: 39.1
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 12..282
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 80..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000140_piloncontigtig00000140_pilon:54070..54918 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1135.t1Ggra1135.t1Gracilaria gracilis GNS1m malemRNAtig00000140_pilon 54070..54918 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1135.t1 ID=Ggra1135.t1|Name=Ggra1135.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=283bp
MPDPALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELL
RNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIE
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKA
YIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDS
VTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVT
NAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR007832RNA_pol_Rpc34
IPR016049RNA_pol_Rpc34-like
IPR036390WH_DNA-bd_sf