Ggra1135.t1 (polypeptide) Gracilaria gracilis GNS1m male
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Overview
Homology
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A2V3J6Q7 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q7_9FLOR) HSP 1 Score: 451 bits (1159), Expect = 3.870e-158 Identity = 224/282 (79.43%), Postives = 246/282 (87.23%), Query Frame = 0
Query: 1 MPDPALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
MPDP LRALQT ILR+CQ+ P+GLTD EIVQ LD +VKPKH LDSYNELLR GR KLLKK+VGE KK VVVYQWVSLKDAEKFRGLDA ERMV DMIERSGQNGVTKRDMKFRTNIQN SELKQIVERLIARGLVKEIKSVQGANKK YIAS VEPS AHT GPWYND++EFDT FI+TIYA ++ YM +ME+VT++SVT+YVADL IS E L+KSDIRQLMMTMLYDS IE+C GR DGG+Y+R T+ P VNHLSS+PCG CPVFHDCSPDG+IS KT
Sbjct: 1 MPDPLLRALQTTILRICQTCPEGLTDGEIVQRLDTDVKPKHRLDSYNELLRTGRLKLLKKTVGEGPTKKDVVVYQWVSLKDAEKFRGLDATERMVYDMIERSGQNGVTKRDMKFRTNIQNTSELKQIVERLIARGLVKEIKSVQGANKKVYIASEVEPSAAHTGGPWYNDDKEFDTEFIETIYAHILSYMGTMEFVTIESVTDYVADLKISNEDLTKSDIRQLMMTMLYDSVIEECEGRKDGGDYYRRATSTPGVNHLSSVPCGSCPVFHDCSPDGVISPKT 282
BLAST of Ggra1135.t1 vs. uniprot
Match: R7QCX5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX5_CHOCR) HSP 1 Score: 315 bits (807), Expect = 5.910e-105 Identity = 153/259 (59.07%), Postives = 195/259 (75.29%), Query Frame = 0
Query: 24 LTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
+TD E+ L + K K + +YN+LL GR +L + G +K V+YQWVS +DAEKF+GLDA++RMV D++ + GQNG TK++MKFRTNIQ+ +ELKQI+ERLI+R L+KEIKSVQG NK+ YI +G+EPST HT GPWYND+QEFDT+FI+ IY QV+ ++ YVTVD VT YVA++ +S E LS SDI+ LM TMLYD+ IE C G+ DG EYFR V PAVNHL+SIPCG CPVFHDC P G+IS +T
Sbjct: 1 MTDKEVTAKLHFDTKAKIRIAAYNKLLAKGRIRLAARVTGTGENRKQQVLYQWVSAEDAEKFKGLDASDRMVLDLVVKGGQNGATKKEMKFRTNIQSNTELKQILERLISRNLIKEIKSVQGTNKRIYIKAGLEPSTLHTGGPWYNDDQEFDTVFIEAIYEQVLAFIKKTNYVTVDQVTSYVAEIKLSNEELSHSDIKSLMNTMLYDTVIELCEGKGDGHEYFRHVQPTPAVNHLASIPCGSCPVFHDCVPGGVISPQT 259
BLAST of Ggra1135.t1 vs. uniprot
Match: E1Z933 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z933_CHLVA) HSP 1 Score: 146 bits (368), Expect = 1.050e-38 Identity = 88/277 (31.77%), Postives = 152/277 (54.87%), Query Frame = 0
Query: 7 RALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRI-VTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
R ++ +IL VC+ P+G+ D + L +V + N LL + + ++L + +Y+ ++ DA +F+GL A + +V I+ +G G+ RDMK RTN+Q P ++ +I++ L R LVK IKSVQ A++K Y+ +EP+ T GPWY + FD+ FI + + Y+ + T+ + ++ + IS + L + D+ +++ T+ D IE G DG ++R+ + + P +SIPCG+CPVF++C G IS +T
Sbjct: 3 RKVEELILTVCRKHPEGVQDTALEAELP-SVAVNDRAVAINSLLASLKLQILVNPADPSSH-----IYKASAVGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQP-KINKILKTLEERCLVKSIKSVQNASRKVYMLYELEPAKELTGGPWYGPDA-FDSEFITVLQEATMSYINTKGDATLADIVRFIKETGISKQALQEDDVERIINTLECDGKIEGVEGDEDGLPHYRLPLMSIPEATPFTSIPCGVCPVFNECVEGGKISPQT 271
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A061SD36 (DNA-directed RNA polymerase III subunit C34 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SD36_9CHLO) HSP 1 Score: 144 bits (363), Expect = 3.870e-37 Identity = 86/277 (31.05%), Postives = 150/277 (54.15%), Query Frame = 0
Query: 4 PALRALQTMILRVCQSRPDGLTDAEIVQHLDK-NVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIIS 279
P+ + I+ +C+ +GL++A + + L ++ K + N LL+ R ++ K G +VY+ + ++DA KF+GL E +V +I+++G G+ +DMKF++N+Q P ++ +I++ L R LVK ++SV G NKK Y+ +EPS T G WY EQ+FD+ FI+ + ++ VT+ V E++ L + D+ ++ +++YD I+ +D + + P + +SIPCG+CPVF C PDG IS
Sbjct: 86 PSSGTAEQGIIDLCRKHSEGLSEAVLDKELSGFDISAKAA--AINSLLQQQRLQIFKSPDGS-------LVYKEIKVEDAAKFKGLGPQEMLVYQLIKQTGNKGMWTKDMKFQSNLQQP-QITKILKTLEGRNLVKSVRSVTGGNKKVYMLYELEPSRELTGGAWYT-EQKFDSEFIEALREACSQFIHKQGDVTLGDVVEFIHSRGFVKVDLREEDVLSVINSLVYDGRIDSVDDEDDVEHFRPAMLKIPRQSAFTSIPCGVCPVFAQCRPDGPIS 351
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A2P6V1J4 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1J4_9CHLO) HSP 1 Score: 142 bits (357), Expect = 4.940e-37 Identity = 88/278 (31.65%), Postives = 150/278 (53.96%), Query Frame = 0
Query: 7 RALQTMILRVCQSRPDGLTDAEIVQHL-DKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVT-NAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
R ++ M+L VC+ P+G+ D + L D +V + + N LL + + ++L + +Y+ + D +F+GL A + +V I+ +G G+ RDMK RTN+Q P K I++ L R LVK +KSVQ A++K Y+ +EP+ T GPW+ + FD+ F+ + + Y+ S ++ + ++ + IS + L + D+ +++ T+ YD IEQ +DG ++R++ P L+SIPCG+CPVF +C G IS T
Sbjct: 3 RKVEEMVLAVCRKHPEGVADTVLESELPDVSVNDRAL--AINSLLSSMKLQILVNPADPSSH-----IYKASTTGDTARFKGLTAEDMLVYQCIQAAGNIGIWTRDMKQRTNLQQPKVTK-ILKALEERLLVKSVKSVQNASRKVYMLYELEPAKELTGGPWFGPDA-FDSEFVAVLQETTLSYIKSKGQPSLADIVRFIKETGISKQALQEDDVERIINTLEYDGKIEQIE-EDDGDRHYRMMLMRIPESTPLTSIPCGVCPVFSECVEGGKISPAT 270
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A1Y1IK16 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI) HSP 1 Score: 138 bits (347), Expect = 1.670e-35 Identity = 90/286 (31.47%), Postives = 145/286 (50.70%), Query Frame = 0
Query: 2 PDPALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRN-----DGGEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
PD A+ L+ I +CQ G+T + L D E L + + LL + + + + Y+ V+ +D +FRGL + E +V +I+ S G+ RD+K R+N+Q P ++ +I++ L R L+K +KSV N+K Y+ +EPS T G WY EQEFD FI + V ++ + VT++ + +V + L D +Q+ T++YD +E+ + + D Y + P N +SIPCG+CPV H+CS DG+IS T
Sbjct: 6 PDSAVFRLEEAIANLCQESDGGVTQKMLQDELP---------DIPLEELGSALNVLLSRHQLQMYTQASTLYYKPVNQEDRVRFRGLGSEEMLVYQIIQASQNMGIWTRDLKLRSNLQQP-QITKIIKTLEGRRLIKAVKSVASKNRKVYMLYEIEPSREITGGAWYT-EQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEISEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHECSDDGLISPAT 280
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A7M7RE84 (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RE84_STRPU) HSP 1 Score: 136 bits (343), Expect = 1.050e-34 Identity = 89/303 (29.37%), Postives = 151/303 (49.83%), Query Frame = 0
Query: 4 PALRALQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMF-----------------SMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDG-------GEYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
P L+ IL +C+ PDG+ D+ + + L NV + + + N LL +G+ L+K S +VY+ K +G D ER+V +IE+SG G+ RD++ ++N+Q ++L +I++ L +R L+K +KSV A KKAY+ + P + T G WY+D QEF++ F++ + Q ++ + +V+ + V +++ +L IS LS DI ++ T++YD +E G + +R + L PCG+CPVF+ C G IS T
Sbjct: 10 PDAMNLEERILELCKQNPDGIADSTLQKELP-NVDTRQRVSAVNRLLSSGKIDLVKTS--------NELVYRLKDPGVVSKIKGADNQERLVYQIIEQSGNKGIWTRDIRLKSNLQL-TQLNKILKNLESRKLIKAVKSVGAARKKAYMLFNLTPDPSVTGGTWYSD-QEFESEFVEVLNQQCFKFLQQKVESVSALQLDPLLKRNRSFVSPEEVWKFITELRISKVDLSVDDINTILNTLIYDGKVEMTISAGAGTSSSDSSSKLYRAIQPLTQPTGLMRSPCGVCPVFNQCYEGGAISPST 301
BLAST of Ggra1135.t1 vs. uniprot
Match: I0Z1U2 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1U2_COCSC) HSP 1 Score: 134 bits (337), Expect = 3.460e-34 Identity = 84/275 (30.55%), Postives = 146/275 (53.09%), Query Frame = 0
Query: 9 LQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQCTGRNDGGEYFRIVTNA-PAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
++ IL +C+ P+GL +A + Q++ + + N LL R ++L+ +VYQ V ++A K +GL A + +V I ++G G+ +D+K RTN+Q P ++ +I++ L R LVK +KSV ++K YI +EP+ T G WY Q+FD FI + Y+ + T++ V ++V S L +D+ ++ T+ +D +E + +D GE +R + P + +S+PCG+CPV ++CS G+IS T
Sbjct: 5 IEESILALCRQHPEGLPEAVLEQYIPATQRT----TAMNNLLAKHRLRILQHPRDNS------LVYQEVIQEEAAKLKGLSAEDLLVYQHIAQAGDTGIWTKDLKNRTNLQQP-QITKILKNLDQRSLVKSVKSVINPSRKVYILFELEPARELTGGAWYTG-QDFDAEFIQVLQQACHKYIENEGVATLEEVADFVRTKGFSRVELRDADVLCILRTLEFDGLVE--SSLSDDGEVYRPARHVVPKTSPFTSMPCGVCPVINECSDGGVISPST 265
BLAST of Ggra1135.t1 vs. uniprot
Match: C1EAY3 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EAY3_MICCC) HSP 1 Score: 134 bits (338), Expect = 5.210e-34 Identity = 85/299 (28.43%), Postives = 154/299 (51.51%), Query Frame = 0
Query: 10 QTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSMEYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYDSAIEQ-------------CTGRNDGGE-------------YFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
+ IL C+ P+G+ D ++ Q + ++ + N LL + + ++ K G+ +VY+ V ++A KFRGL + + +V +I++SG +G+ +++K R+N+ +++ +I + L +R L+K +KSV N+K Y+ +EPS T G WY E E+D FI+ + Q ++ VT+D V+++V +S L K ++ Q++ T++YD ++Q G D G Y P + +S+PCG+CPVF++C P G+IS +T
Sbjct: 3 EAAILEQCRLHPEGIPDQDLAQKIS-HIPVNDRAQAINSLLSSRKLQIYKD--GD------TIVYRMVMQEEAVKFRGLASEDLLVYQIIQQSGNSGIWTKELKQRSNLAQ-AQITKIFKSLESRKLIKAVKSVSQQNRKVYMLYELEPSREITGGAWYT-EHEYDAEFINVLREQCEKFIVGQGKVTLDQVSDFVKKTKLSHVELGKEEVLQIVNTLVYDGKVDQFDEHEKGEGDADDAKGDGDVGNDERDYGDGEKVTYYVPAAYPVPEKSAFTSVPCGVCPVFNECRPGGLISPET 290
BLAST of Ggra1135.t1 vs. uniprot
Match: A0A8C6SEG5 (DNA-directed RNA polymerase III subunit RPC6 n=5 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6SEG5_9GOBI) HSP 1 Score: 134 bits (337), Expect = 8.720e-34 Identity = 90/300 (30.00%), Postives = 155/300 (51.67%), Query Frame = 0
Query: 9 LQTMILRVCQSRPDGLTDAEIVQHLDKNVKPKHCLDSYNELLRNGRSKLLKKSVGEEAQKKYVVVYQWVSLKDAEKFRGLDAAERMVDDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGANKKAYIASGVEPSTAHTSGPWYNDEQEFDTMFIDTIYAQVVGYMFSM-----------------EYVTVDSVTEYVADLHISTETLSKSDIRQLMMTMLYD--------SAIEQCTGRNDGG-EYFRIVTNAPAVNHLSSIPCGLCPVFHDCSPDGIISSKT 282
L I +C+ P G+TD ++Q+ +++P+ + N+LL G+ +LL+ S G ++Y+ + + K +G D E++V +IE +G G+ RD++F++N+ +E+ +I++ L ++ L+K +KSV + KK Y+ V+P + T G WY+D Q+F++ F++ + Q ++ S + T V +Y+++L IS LS DI ++ T++YD +A E G DG + +R V L PCGLCPVF DCS G IS T
Sbjct: 17 LDLSIKDLCEQFPHGITD-HVIQNDMPHLEPQQRATAINKLLSVGQLELLRNSSG--------LLYRLKDSQGSSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRFKSNLPL-TEINKILKNLESKKLIKAVKSVAASKKKVYMLYNVQPDRSVTGGAWYSD-QDFESEFVEVLNQQCFKFLQSKAEVARDGKHSPMVQRNSSFATSHEVWKYISELGISKVELSMEDIETILNTLIYDGKAEMTVIAAKEGAVGSVDGQMKLYRGVNAIATATGLVKTPCGLCPVFDDCSDGGEISPST 305 The following BLAST results are available for this feature:
BLAST of Ggra1135.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Ggra1135.t1 ID=Ggra1135.t1|Name=Ggra1135.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=283bpback to top |