Ggra11135.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11135.t1
Unique NameGgra11135.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:101753..103264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4113.PGSC0003DMT400075881
PFAMsNB-ARC
Max annot lvl35493|Streptophyta
Evalue2.31e-08
EggNOG OGsKOG4658@1|root,KOG4658@2759|Eukaryota,37STH@33090|Viridiplantae,3GHSF@35493|Streptophyta,44S72@71274|asterids
DescriptionBelongs to the disease resistance NB-LRR family
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11135Ggra11135Gracilaria gracilis GNS1m malegenetig00000110_pilon 101753..103264 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11135.t1.start1Ggra11135.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000110_pilon 101753..101755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11135.t1.CDS1Ggra11135.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000110_pilon 101753..103264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11135.t1.exon1Ggra11135.t1.exon1Gracilaria gracilis GNS1m maleexontig00000110_pilon 101753..103264 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11135.t1.stop1Ggra11135.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000110_pilon 103262..103264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11135.t1Ggra11135.t1Gracilaria gracilis GNS1m malepolypeptidetig00000110_pilon 101753..103264 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11135.t1 ID=Ggra11135.t1|Name=Ggra11135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp
MDIGQSPSSTERHVEDCKPFARPRLKRRRLGYVRPSFVAVRQNPAHYVLD
FSESSTRIERSVCNLVISDKRSVAVVGLPGCGKTVILRGLAYYPEVQRVF
RDGICLVHLGPEVTVGATFDYLFEVMHRLRGFTSVKRIQNLLERKQNYDE
CMESIQRFMKEKRFLLILDNVCECPPDVLHILSILTLRKHARAMGRMTIL
TSTRSVSIARSFAGTSVLQIRLYRHLDDIARDIFCAHSAFDRSYIDSVCA
KKDSPVSFILEKCSGMPLLLAVVGGAIKRLLVNADSEESRNGMWLHYKKY
LANNFDQFGEICGLFKMMNACVRDVSSTNDWNVNITARDAVCSLALFKKG
IWVPLVILQRLWGLDKKEDAIRIVQSLARLCLVLQEMRKGKVGISIPHIV
VDFCSHEAKKGKGIRIWHQRLLNSFLITTANGSPEDGSLLDHVTTQRSAE
EEQYLKENVGYHLSQVLSVSEGGSETSPSFLAAASKFFRNHLADDVSGST
QPS*
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spliced messenger RNA

>Ggra11135.t1 ID=Ggra11135.t1|Name=Ggra11135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000110_pilon:101753..103264+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATTGGCCAGTCTCCTTCGTCCACCGAACGCCACGTCGAGGACTG
TAAACCGTTCGCAAGACCTCGTTTAAAGCGGCGACGTTTGGGGTATGTTC
GACCGTCTTTCGTCGCAGTGCGTCAAAATCCTGCGCACTACGTGCTCGAC
TTTTCGGAATCGTCCACCAGGATCGAACGCAGCGTGTGTAATCTTGTCAT
TTCCGACAAACGTTCGGTGGCCGTGGTTGGCTTGCCTGGGTGCGGTAAAA
CTGTCATTCTGCGCGGGCTAGCATACTATCCCGAAGTTCAGCGCGTGTTC
CGCGATGGAATTTGTCTTGTGCACTTGGGCCCAGAGGTTACGGTCGGCGC
AACTTTCGACTATCTTTTCGAGGTTATGCACCGGTTGCGCGGCTTTACCT
CTGTTAAGAGAATTCAGAATCTGCTTGAGCGAAAGCAAAATTATGACGAA
TGCATGGAATCCATACAACGCTTTATGAAGGAAAAACGGTTTTTGCTCAT
CCTAGATAACGTCTGCGAGTGTCCCCCCGACGTTCTGCACATCTTATCCA
TTCTAACTTTGCGTAAACATGCAAGAGCAATGGGTCGAATGACCATCTTA
ACATCTACCCGCAGTGTCAGCATTGCTCGTTCTTTTGCTGGCACATCCGT
GCTACAGATCCGGCTTTACCGACATTTAGACGACATTGCCCGAGATATAT
TCTGCGCACATTCCGCATTCGATCGTTCGTATATCGATTCCGTTTGCGCT
AAGAAGGATTCTCCTGTCAGCTTCATACTGGAGAAATGTTCAGGAATGCC
TCTTCTTCTTGCTGTAGTTGGTGGTGCGATCAAACGATTGTTGGTTAACG
CCGACTCTGAAGAAAGCCGCAATGGCATGTGGCTCCATTACAAGAAATAC
CTGGCGAATAACTTTGATCAATTCGGAGAGATATGTGGCTTGTTCAAAAT
GATGAATGCTTGCGTGCGTGACGTTTCCTCAACCAACGATTGGAACGTGA
ATATAACGGCACGTGACGCCGTTTGCTCCCTTGCACTGTTCAAGAAAGGT
ATTTGGGTTCCGCTTGTGATTCTGCAGCGGCTATGGGGCCTGGACAAGAA
GGAAGATGCAATAAGAATAGTTCAATCACTGGCGAGACTTTGCCTTGTAC
TCCAGGAAATGAGAAAGGGAAAGGTCGGTATTTCAATCCCTCACATTGTG
GTAGATTTTTGCAGCCATGAGGCAAAGAAAGGCAAGGGAATTAGAATATG
GCACCAGAGGCTACTCAACTCGTTCTTGATCACGACTGCGAACGGCTCCC
CCGAAGATGGGTCGCTTTTGGATCACGTCACGACGCAACGAAGCGCTGAA
GAAGAGCAGTACCTTAAAGAAAACGTCGGATATCACTTGTCACAGGTGTT
AAGCGTATCAGAAGGCGGGTCGGAAACAAGCCCATCTTTCCTTGCAGCAG
CATCAAAGTTCTTTCGCAATCACCTGGCAGACGACGTTAGTGGGTCAACA
CAACCTTCATAG
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protein sequence of Ggra11135.t1

>Ggra11135.t1 ID=Ggra11135.t1|Name=Ggra11135.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
MDIGQSPSSTERHVEDCKPFARPRLKRRRLGYVRPSFVAVRQNPAHYVLD
FSESSTRIERSVCNLVISDKRSVAVVGLPGCGKTVILRGLAYYPEVQRVF
RDGICLVHLGPEVTVGATFDYLFEVMHRLRGFTSVKRIQNLLERKQNYDE
CMESIQRFMKEKRFLLILDNVCECPPDVLHILSILTLRKHARAMGRMTIL
TSTRSVSIARSFAGTSVLQIRLYRHLDDIARDIFCAHSAFDRSYIDSVCA
KKDSPVSFILEKCSGMPLLLAVVGGAIKRLLVNADSEESRNGMWLHYKKY
LANNFDQFGEICGLFKMMNACVRDVSSTNDWNVNITARDAVCSLALFKKG
IWVPLVILQRLWGLDKKEDAIRIVQSLARLCLVLQEMRKGKVGISIPHIV
VDFCSHEAKKGKGIRIWHQRLLNSFLITTANGSPEDGSLLDHVTTQRSAE
EEQYLKENVGYHLSQVLSVSEGGSETSPSFLAAASKFFRNHLADDVSGST
QPS*
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mRNA from alignment at tig00000110_pilon:101753..103264+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11135.t1 ID=Ggra11135.t1|Name=Ggra11135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000110_pilon:101753..103264+ (Gracilaria gracilis GNS1m male)
ATGGACATTGGCCAGTCTCCTTCGTCCACCGAACGCCACGTCGAGGACTG
TAAACCGTTCGCAAGACCTCGTTTAAAGCGGCGACGTTTGGGGTATGTTC
GACCGTCTTTCGTCGCAGTGCGTCAAAATCCTGCGCACTACGTGCTCGAC
TTTTCGGAATCGTCCACCAGGATCGAACGCAGCGTGTGTAATCTTGTCAT
TTCCGACAAACGTTCGGTGGCCGTGGTTGGCTTGCCTGGGTGCGGTAAAA
CTGTCATTCTGCGCGGGCTAGCATACTATCCCGAAGTTCAGCGCGTGTTC
CGCGATGGAATTTGTCTTGTGCACTTGGGCCCAGAGGTTACGGTCGGCGC
AACTTTCGACTATCTTTTCGAGGTTATGCACCGGTTGCGCGGCTTTACCT
CTGTTAAGAGAATTCAGAATCTGCTTGAGCGAAAGCAAAATTATGACGAA
TGCATGGAATCCATACAACGCTTTATGAAGGAAAAACGGTTTTTGCTCAT
CCTAGATAACGTCTGCGAGTGTCCCCCCGACGTTCTGCACATCTTATCCA
TTCTAACTTTGCGTAAACATGCAAGAGCAATGGGTCGAATGACCATCTTA
ACATCTACCCGCAGTGTCAGCATTGCTCGTTCTTTTGCTGGCACATCCGT
GCTACAGATCCGGCTTTACCGACATTTAGACGACATTGCCCGAGATATAT
TCTGCGCACATTCCGCATTCGATCGTTCGTATATCGATTCCGTTTGCGCT
AAGAAGGATTCTCCTGTCAGCTTCATACTGGAGAAATGTTCAGGAATGCC
TCTTCTTCTTGCTGTAGTTGGTGGTGCGATCAAACGATTGTTGGTTAACG
CCGACTCTGAAGAAAGCCGCAATGGCATGTGGCTCCATTACAAGAAATAC
CTGGCGAATAACTTTGATCAATTCGGAGAGATATGTGGCTTGTTCAAAAT
GATGAATGCTTGCGTGCGTGACGTTTCCTCAACCAACGATTGGAACGTGA
ATATAACGGCACGTGACGCCGTTTGCTCCCTTGCACTGTTCAAGAAAGGT
ATTTGGGTTCCGCTTGTGATTCTGCAGCGGCTATGGGGCCTGGACAAGAA
GGAAGATGCAATAAGAATAGTTCAATCACTGGCGAGACTTTGCCTTGTAC
TCCAGGAAATGAGAAAGGGAAAGGTCGGTATTTCAATCCCTCACATTGTG
GTAGATTTTTGCAGCCATGAGGCAAAGAAAGGCAAGGGAATTAGAATATG
GCACCAGAGGCTACTCAACTCGTTCTTGATCACGACTGCGAACGGCTCCC
CCGAAGATGGGTCGCTTTTGGATCACGTCACGACGCAACGAAGCGCTGAA
GAAGAGCAGTACCTTAAAGAAAACGTCGGATATCACTTGTCACAGGTGTT
AAGCGTATCAGAAGGCGGGTCGGAAACAAGCCCATCTTTCCTTGCAGCAG
CATCAAAGTTCTTTCGCAATCACCTGGCAGACGACGTTAGTGGGTCAACA
CAACCTTCATAG
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Coding sequence (CDS) from alignment at tig00000110_pilon:101753..103264+

>Ggra11135.t1 ID=Ggra11135.t1|Name=Ggra11135.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000110_pilon:101753..103264+ (Gracilaria gracilis GNS1m male)
ATGGACATTGGCCAGTCTCCTTCGTCCACCGAACGCCACGTCGAGGACTG
TAAACCGTTCGCAAGACCTCGTTTAAAGCGGCGACGTTTGGGGTATGTTC
GACCGTCTTTCGTCGCAGTGCGTCAAAATCCTGCGCACTACGTGCTCGAC
TTTTCGGAATCGTCCACCAGGATCGAACGCAGCGTGTGTAATCTTGTCAT
TTCCGACAAACGTTCGGTGGCCGTGGTTGGCTTGCCTGGGTGCGGTAAAA
CTGTCATTCTGCGCGGGCTAGCATACTATCCCGAAGTTCAGCGCGTGTTC
CGCGATGGAATTTGTCTTGTGCACTTGGGCCCAGAGGTTACGGTCGGCGC
AACTTTCGACTATCTTTTCGAGGTTATGCACCGGTTGCGCGGCTTTACCT
CTGTTAAGAGAATTCAGAATCTGCTTGAGCGAAAGCAAAATTATGACGAA
TGCATGGAATCCATACAACGCTTTATGAAGGAAAAACGGTTTTTGCTCAT
CCTAGATAACGTCTGCGAGTGTCCCCCCGACGTTCTGCACATCTTATCCA
TTCTAACTTTGCGTAAACATGCAAGAGCAATGGGTCGAATGACCATCTTA
ACATCTACCCGCAGTGTCAGCATTGCTCGTTCTTTTGCTGGCACATCCGT
GCTACAGATCCGGCTTTACCGACATTTAGACGACATTGCCCGAGATATAT
TCTGCGCACATTCCGCATTCGATCGTTCGTATATCGATTCCGTTTGCGCT
AAGAAGGATTCTCCTGTCAGCTTCATACTGGAGAAATGTTCAGGAATGCC
TCTTCTTCTTGCTGTAGTTGGTGGTGCGATCAAACGATTGTTGGTTAACG
CCGACTCTGAAGAAAGCCGCAATGGCATGTGGCTCCATTACAAGAAATAC
CTGGCGAATAACTTTGATCAATTCGGAGAGATATGTGGCTTGTTCAAAAT
GATGAATGCTTGCGTGCGTGACGTTTCCTCAACCAACGATTGGAACGTGA
ATATAACGGCACGTGACGCCGTTTGCTCCCTTGCACTGTTCAAGAAAGGT
ATTTGGGTTCCGCTTGTGATTCTGCAGCGGCTATGGGGCCTGGACAAGAA
GGAAGATGCAATAAGAATAGTTCAATCACTGGCGAGACTTTGCCTTGTAC
TCCAGGAAATGAGAAAGGGAAAGGTCGGTATTTCAATCCCTCACATTGTG
GTAGATTTTTGCAGCCATGAGGCAAAGAAAGGCAAGGGAATTAGAATATG
GCACCAGAGGCTACTCAACTCGTTCTTGATCACGACTGCGAACGGCTCCC
CCGAAGATGGGTCGCTTTTGGATCACGTCACGACGCAACGAAGCGCTGAA
GAAGAGCAGTACCTTAAAGAAAACGTCGGATATCACTTGTCACAGGTGTT
AAGCGTATCAGAAGGCGGGTCGGAAACAAGCCCATCTTTCCTTGCAGCAG
CATCAAAGTTCTTTCGCAATCACCTGGCAGACGACGTTAGTGGGTCAACA
CAACCTTCATAG
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