Ggra11090.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11090.t1
Unique NameGgra11090.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length826
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:91724..94201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11090Ggra11090Gracilaria gracilis GNS1m malegenetig00000207_pilon 91724..94201 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11090.t1.stop1Ggra11090.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 91724..91726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11090.t1.CDS1Ggra11090.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 91724..94201 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11090.t1.exon1Ggra11090.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 91724..94201 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11090.t1.start1Ggra11090.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 94199..94201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11090.t1Ggra11090.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 91724..94201 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11090.t1 ID=Ggra11090.t1|Name=Ggra11090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=826bp
MPLLPGSSPWLKNYLIGALSEPPQTPSLNASYLLATTPVTHRRTLSCFDG
AHSVSVVLSQCVASTLDADEEGTGVTTRNLLGYILAPVQAVVLTDMTTSP
PSATLLLKDMRVFSERRHQRPPGIPLGVDKDPEVVTALRANIGRQLAAFN
DLPEKGNQPQSDAELVAVFGKLENDSPPFPPRNLFIETDTFGLSCAEDEP
LGNGIANGLPQANDDEDDELVIDPKDLELLDPDPLPILGAITPSTATPQS
AARSNSARITRDNNAASNAESHGNEPEEQNANGFDDVSEMQNGPIERTSE
TQSQKSKEHSVHDAFTVEERPLTQHFIFDDENVESAHGASEASESSEDQD
MGDLHLGTQFDVMALENNDGDNKLVQSDTEGELKKSKAVTVSQTAPKKRA
GDGELQFAPKSANNRKKSAVAKSGTGRRDIGRDPSKSVANQQPTDNTMAI
TRATRSTTKQVSSDKKQPEEDVENQAGKDDKGPLTRNAAPEVDEEREDDR
TEDQGKKEAVPGAEKQGTVESATETPVKDSALGEAEHEEEHQPSSPRVKT
QQPGGSEIPDESEPKEDEHQIKPSQAEKDSEEPEKDPERDPEKDPEKDPE
KDPEKDPEKDPEKEPEKEPQKEPAKEAEESEKEVEKAPEHSLPTDAVEDN
DEDDAQKEQGQEVDEPKTPAVEEAGETVVEEQERDMQKMDVSEFNEKPRQ
SKKRPSPPPHAMPEEDVIEPKQPTEMNLSTESRVGVVAPKIGNPGKKTKR
QRNGEDYHLEKIQAELQVIKDFREKVDRNTEMFILNPEHFLPGKTRRSVD
RSRRESYPAPRISQVSGLNSDRVAR*
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spliced messenger RNA

>Ggra11090.t1 ID=Ggra11090.t1|Name=Ggra11090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2478bp|location=Sequence derived from alignment at tig00000207_pilon:91724..94201- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACTGCTGCCGGGAAGCTCCCCATGGCTGAAGAACTATTTAATTGG
CGCCCTATCCGAACCCCCACAGACTCCATCGCTCAACGCCTCTTATCTGC
TGGCAACTACACCAGTAACTCATCGTCGAACTCTTTCTTGCTTTGACGGA
GCTCACAGTGTCAGCGTCGTGCTCTCACAGTGCGTAGCATCTACCTTAGA
CGCTGACGAGGAAGGAACTGGTGTAACCACTCGAAACCTTCTGGGCTACA
TCTTGGCTCCAGTCCAAGCTGTAGTTCTCACCGATATGACCACCTCCCCA
CCGTCCGCCACGCTACTACTCAAAGACATGCGCGTATTCTCGGAAAGAAG
GCATCAAAGACCGCCTGGCATTCCACTTGGCGTCGACAAGGACCCAGAAG
TAGTGACTGCGCTTCGAGCGAACATTGGTCGTCAGCTAGCCGCGTTTAAC
GATCTACCTGAAAAGGGAAACCAGCCTCAGAGTGACGCTGAGTTGGTCGC
AGTTTTTGGAAAGCTCGAGAACGACTCTCCCCCATTTCCCCCACGCAACC
TCTTTATTGAGACCGACACATTCGGCCTCAGTTGCGCAGAAGATGAACCA
CTTGGAAACGGTATAGCGAACGGGCTACCGCAAGCGAATGATGATGAGGA
CGATGAACTGGTCATTGATCCTAAAGACCTCGAGCTTCTCGATCCAGACC
CGCTGCCAATACTAGGGGCAATCACACCAAGCACGGCAACTCCGCAAAGC
GCAGCCAGATCGAATAGCGCCAGAATTACCAGAGATAACAACGCAGCCTC
CAACGCTGAGTCCCACGGTAATGAGCCTGAGGAACAGAATGCAAACGGCT
TTGATGACGTTAGCGAGATGCAAAACGGTCCGATTGAGAGGACTAGTGAA
ACTCAATCACAAAAATCTAAGGAACATAGCGTTCACGACGCATTTACCGT
GGAAGAACGCCCTCTTACGCAACATTTTATTTTCGATGACGAAAATGTTG
AAAGCGCACACGGTGCATCCGAAGCTTCTGAATCTTCTGAGGACCAAGAC
ATGGGAGACCTACATCTGGGTACGCAATTTGACGTAATGGCGCTGGAAAA
CAACGATGGAGACAATAAGCTGGTGCAGTCAGACACTGAAGGAGAACTGA
AGAAATCGAAAGCCGTAACCGTGTCACAGACCGCTCCCAAGAAAAGGGCG
GGAGATGGAGAATTACAGTTCGCGCCAAAAAGTGCCAATAATCGAAAGAA
ATCGGCTGTAGCCAAATCGGGCACCGGACGGCGCGATATAGGCAGAGATC
CGTCCAAGTCCGTAGCAAACCAACAACCCACAGATAACACAATGGCAATC
ACAAGGGCGACGCGCTCGACAACCAAGCAGGTTAGCTCCGATAAAAAGCA
GCCTGAGGAGGACGTTGAAAACCAGGCTGGGAAAGACGACAAAGGCCCTC
TCACACGCAATGCAGCTCCAGAGGTTGATGAGGAGAGGGAAGATGATCGG
ACTGAAGACCAAGGCAAGAAAGAGGCTGTACCCGGGGCTGAGAAACAGGG
CACTGTTGAGTCTGCTACCGAAACCCCCGTGAAGGACTCTGCATTAGGTG
AAGCTGAACATGAGGAAGAGCATCAACCTTCCTCTCCAAGAGTTAAGACA
CAGCAACCAGGCGGCTCAGAGATTCCGGACGAGAGCGAGCCGAAAGAGGA
CGAGCACCAAATTAAACCATCCCAGGCCGAAAAGGATTCTGAGGAACCTG
AGAAGGACCCAGAGAGGGACCCAGAGAAAGACCCAGAGAAAGACCCAGAG
AAAGACCCAGAGAAAGACCCAGAGAAAGACCCAGAGAAAGAACCAGAGAA
AGAACCACAGAAAGAACCAGCAAAAGAAGCAGAGGAGTCAGAGAAAGAGG
TCGAAAAAGCACCAGAACACTCACTGCCTACTGACGCTGTTGAGGACAAT
GATGAAGATGATGCGCAGAAGGAACAGGGTCAAGAGGTCGATGAACCGAA
AACCCCTGCTGTAGAAGAGGCAGGAGAGACAGTTGTCGAAGAACAAGAAC
GAGATATGCAGAAGATGGATGTATCGGAGTTCAACGAAAAACCCAGGCAA
TCAAAGAAACGTCCATCACCGCCACCCCATGCAATGCCCGAGGAAGACGT
GATCGAGCCAAAGCAACCTACTGAGATGAACTTAAGTACTGAAAGCAGGG
TAGGCGTGGTCGCGCCCAAAATTGGTAATCCAGGGAAGAAGACTAAGAGA
CAACGAAATGGCGAGGATTATCATTTAGAGAAGATACAAGCTGAGCTGCA
GGTTATAAAAGACTTCCGAGAAAAGGTAGATCGAAACACCGAGATGTTCA
TTTTGAACCCAGAACACTTTCTACCTGGCAAAACGAGAAGGAGCGTTGAT
CGCTCACGACGAGAGTCATACCCCGCGCCACGGATCTCGCAGGTATCCGG
TCTGAACAGCGATAGGGTTGCGAGATGA
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protein sequence of Ggra11090.t1

>Ggra11090.t1 ID=Ggra11090.t1|Name=Ggra11090.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=826bp
MPLLPGSSPWLKNYLIGALSEPPQTPSLNASYLLATTPVTHRRTLSCFDG
AHSVSVVLSQCVASTLDADEEGTGVTTRNLLGYILAPVQAVVLTDMTTSP
PSATLLLKDMRVFSERRHQRPPGIPLGVDKDPEVVTALRANIGRQLAAFN
DLPEKGNQPQSDAELVAVFGKLENDSPPFPPRNLFIETDTFGLSCAEDEP
LGNGIANGLPQANDDEDDELVIDPKDLELLDPDPLPILGAITPSTATPQS
AARSNSARITRDNNAASNAESHGNEPEEQNANGFDDVSEMQNGPIERTSE
TQSQKSKEHSVHDAFTVEERPLTQHFIFDDENVESAHGASEASESSEDQD
MGDLHLGTQFDVMALENNDGDNKLVQSDTEGELKKSKAVTVSQTAPKKRA
GDGELQFAPKSANNRKKSAVAKSGTGRRDIGRDPSKSVANQQPTDNTMAI
TRATRSTTKQVSSDKKQPEEDVENQAGKDDKGPLTRNAAPEVDEEREDDR
TEDQGKKEAVPGAEKQGTVESATETPVKDSALGEAEHEEEHQPSSPRVKT
QQPGGSEIPDESEPKEDEHQIKPSQAEKDSEEPEKDPERDPEKDPEKDPE
KDPEKDPEKDPEKEPEKEPQKEPAKEAEESEKEVEKAPEHSLPTDAVEDN
DEDDAQKEQGQEVDEPKTPAVEEAGETVVEEQERDMQKMDVSEFNEKPRQ
SKKRPSPPPHAMPEEDVIEPKQPTEMNLSTESRVGVVAPKIGNPGKKTKR
QRNGEDYHLEKIQAELQVIKDFREKVDRNTEMFILNPEHFLPGKTRRSVD
RSRRESYPAPRISQVSGLNSDRVAR*
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mRNA from alignment at tig00000207_pilon:91724..94201-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11090.t1 ID=Ggra11090.t1|Name=Ggra11090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2478bp|location=Sequence derived from alignment at tig00000207_pilon:91724..94201- (Gracilaria gracilis GNS1m male)
ATGCCACTGCTGCCGGGAAGCTCCCCATGGCTGAAGAACTATTTAATTGG
CGCCCTATCCGAACCCCCACAGACTCCATCGCTCAACGCCTCTTATCTGC
TGGCAACTACACCAGTAACTCATCGTCGAACTCTTTCTTGCTTTGACGGA
GCTCACAGTGTCAGCGTCGTGCTCTCACAGTGCGTAGCATCTACCTTAGA
CGCTGACGAGGAAGGAACTGGTGTAACCACTCGAAACCTTCTGGGCTACA
TCTTGGCTCCAGTCCAAGCTGTAGTTCTCACCGATATGACCACCTCCCCA
CCGTCCGCCACGCTACTACTCAAAGACATGCGCGTATTCTCGGAAAGAAG
GCATCAAAGACCGCCTGGCATTCCACTTGGCGTCGACAAGGACCCAGAAG
TAGTGACTGCGCTTCGAGCGAACATTGGTCGTCAGCTAGCCGCGTTTAAC
GATCTACCTGAAAAGGGAAACCAGCCTCAGAGTGACGCTGAGTTGGTCGC
AGTTTTTGGAAAGCTCGAGAACGACTCTCCCCCATTTCCCCCACGCAACC
TCTTTATTGAGACCGACACATTCGGCCTCAGTTGCGCAGAAGATGAACCA
CTTGGAAACGGTATAGCGAACGGGCTACCGCAAGCGAATGATGATGAGGA
CGATGAACTGGTCATTGATCCTAAAGACCTCGAGCTTCTCGATCCAGACC
CGCTGCCAATACTAGGGGCAATCACACCAAGCACGGCAACTCCGCAAAGC
GCAGCCAGATCGAATAGCGCCAGAATTACCAGAGATAACAACGCAGCCTC
CAACGCTGAGTCCCACGGTAATGAGCCTGAGGAACAGAATGCAAACGGCT
TTGATGACGTTAGCGAGATGCAAAACGGTCCGATTGAGAGGACTAGTGAA
ACTCAATCACAAAAATCTAAGGAACATAGCGTTCACGACGCATTTACCGT
GGAAGAACGCCCTCTTACGCAACATTTTATTTTCGATGACGAAAATGTTG
AAAGCGCACACGGTGCATCCGAAGCTTCTGAATCTTCTGAGGACCAAGAC
ATGGGAGACCTACATCTGGGTACGCAATTTGACGTAATGGCGCTGGAAAA
CAACGATGGAGACAATAAGCTGGTGCAGTCAGACACTGAAGGAGAACTGA
AGAAATCGAAAGCCGTAACCGTGTCACAGACCGCTCCCAAGAAAAGGGCG
GGAGATGGAGAATTACAGTTCGCGCCAAAAAGTGCCAATAATCGAAAGAA
ATCGGCTGTAGCCAAATCGGGCACCGGACGGCGCGATATAGGCAGAGATC
CGTCCAAGTCCGTAGCAAACCAACAACCCACAGATAACACAATGGCAATC
ACAAGGGCGACGCGCTCGACAACCAAGCAGGTTAGCTCCGATAAAAAGCA
GCCTGAGGAGGACGTTGAAAACCAGGCTGGGAAAGACGACAAAGGCCCTC
TCACACGCAATGCAGCTCCAGAGGTTGATGAGGAGAGGGAAGATGATCGG
ACTGAAGACCAAGGCAAGAAAGAGGCTGTACCCGGGGCTGAGAAACAGGG
CACTGTTGAGTCTGCTACCGAAACCCCCGTGAAGGACTCTGCATTAGGTG
AAGCTGAACATGAGGAAGAGCATCAACCTTCCTCTCCAAGAGTTAAGACA
CAGCAACCAGGCGGCTCAGAGATTCCGGACGAGAGCGAGCCGAAAGAGGA
CGAGCACCAAATTAAACCATCCCAGGCCGAAAAGGATTCTGAGGAACCTG
AGAAGGACCCAGAGAGGGACCCAGAGAAAGACCCAGAGAAAGACCCAGAG
AAAGACCCAGAGAAAGACCCAGAGAAAGACCCAGAGAAAGAACCAGAGAA
AGAACCACAGAAAGAACCAGCAAAAGAAGCAGAGGAGTCAGAGAAAGAGG
TCGAAAAAGCACCAGAACACTCACTGCCTACTGACGCTGTTGAGGACAAT
GATGAAGATGATGCGCAGAAGGAACAGGGTCAAGAGGTCGATGAACCGAA
AACCCCTGCTGTAGAAGAGGCAGGAGAGACAGTTGTCGAAGAACAAGAAC
GAGATATGCAGAAGATGGATGTATCGGAGTTCAACGAAAAACCCAGGCAA
TCAAAGAAACGTCCATCACCGCCACCCCATGCAATGCCCGAGGAAGACGT
GATCGAGCCAAAGCAACCTACTGAGATGAACTTAAGTACTGAAAGCAGGG
TAGGCGTGGTCGCGCCCAAAATTGGTAATCCAGGGAAGAAGACTAAGAGA
CAACGAAATGGCGAGGATTATCATTTAGAGAAGATACAAGCTGAGCTGCA
GGTTATAAAAGACTTCCGAGAAAAGGTAGATCGAAACACCGAGATGTTCA
TTTTGAACCCAGAACACTTTCTACCTGGCAAAACGAGAAGGAGCGTTGAT
CGCTCACGACGAGAGTCATACCCCGCGCCACGGATCTCGCAGGTATCCGG
TCTGAACAGCGATAGGGTTGCGAGATGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:91724..94201-

>Ggra11090.t1 ID=Ggra11090.t1|Name=Ggra11090.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2478bp|location=Sequence derived from alignment at tig00000207_pilon:91724..94201- (Gracilaria gracilis GNS1m male)
ATGCCACTGCTGCCGGGAAGCTCCCCATGGCTGAAGAACTATTTAATTGG
CGCCCTATCCGAACCCCCACAGACTCCATCGCTCAACGCCTCTTATCTGC
TGGCAACTACACCAGTAACTCATCGTCGAACTCTTTCTTGCTTTGACGGA
GCTCACAGTGTCAGCGTCGTGCTCTCACAGTGCGTAGCATCTACCTTAGA
CGCTGACGAGGAAGGAACTGGTGTAACCACTCGAAACCTTCTGGGCTACA
TCTTGGCTCCAGTCCAAGCTGTAGTTCTCACCGATATGACCACCTCCCCA
CCGTCCGCCACGCTACTACTCAAAGACATGCGCGTATTCTCGGAAAGAAG
GCATCAAAGACCGCCTGGCATTCCACTTGGCGTCGACAAGGACCCAGAAG
TAGTGACTGCGCTTCGAGCGAACATTGGTCGTCAGCTAGCCGCGTTTAAC
GATCTACCTGAAAAGGGAAACCAGCCTCAGAGTGACGCTGAGTTGGTCGC
AGTTTTTGGAAAGCTCGAGAACGACTCTCCCCCATTTCCCCCACGCAACC
TCTTTATTGAGACCGACACATTCGGCCTCAGTTGCGCAGAAGATGAACCA
CTTGGAAACGGTATAGCGAACGGGCTACCGCAAGCGAATGATGATGAGGA
CGATGAACTGGTCATTGATCCTAAAGACCTCGAGCTTCTCGATCCAGACC
CGCTGCCAATACTAGGGGCAATCACACCAAGCACGGCAACTCCGCAAAGC
GCAGCCAGATCGAATAGCGCCAGAATTACCAGAGATAACAACGCAGCCTC
CAACGCTGAGTCCCACGGTAATGAGCCTGAGGAACAGAATGCAAACGGCT
TTGATGACGTTAGCGAGATGCAAAACGGTCCGATTGAGAGGACTAGTGAA
ACTCAATCACAAAAATCTAAGGAACATAGCGTTCACGACGCATTTACCGT
GGAAGAACGCCCTCTTACGCAACATTTTATTTTCGATGACGAAAATGTTG
AAAGCGCACACGGTGCATCCGAAGCTTCTGAATCTTCTGAGGACCAAGAC
ATGGGAGACCTACATCTGGGTACGCAATTTGACGTAATGGCGCTGGAAAA
CAACGATGGAGACAATAAGCTGGTGCAGTCAGACACTGAAGGAGAACTGA
AGAAATCGAAAGCCGTAACCGTGTCACAGACCGCTCCCAAGAAAAGGGCG
GGAGATGGAGAATTACAGTTCGCGCCAAAAAGTGCCAATAATCGAAAGAA
ATCGGCTGTAGCCAAATCGGGCACCGGACGGCGCGATATAGGCAGAGATC
CGTCCAAGTCCGTAGCAAACCAACAACCCACAGATAACACAATGGCAATC
ACAAGGGCGACGCGCTCGACAACCAAGCAGGTTAGCTCCGATAAAAAGCA
GCCTGAGGAGGACGTTGAAAACCAGGCTGGGAAAGACGACAAAGGCCCTC
TCACACGCAATGCAGCTCCAGAGGTTGATGAGGAGAGGGAAGATGATCGG
ACTGAAGACCAAGGCAAGAAAGAGGCTGTACCCGGGGCTGAGAAACAGGG
CACTGTTGAGTCTGCTACCGAAACCCCCGTGAAGGACTCTGCATTAGGTG
AAGCTGAACATGAGGAAGAGCATCAACCTTCCTCTCCAAGAGTTAAGACA
CAGCAACCAGGCGGCTCAGAGATTCCGGACGAGAGCGAGCCGAAAGAGGA
CGAGCACCAAATTAAACCATCCCAGGCCGAAAAGGATTCTGAGGAACCTG
AGAAGGACCCAGAGAGGGACCCAGAGAAAGACCCAGAGAAAGACCCAGAG
AAAGACCCAGAGAAAGACCCAGAGAAAGACCCAGAGAAAGAACCAGAGAA
AGAACCACAGAAAGAACCAGCAAAAGAAGCAGAGGAGTCAGAGAAAGAGG
TCGAAAAAGCACCAGAACACTCACTGCCTACTGACGCTGTTGAGGACAAT
GATGAAGATGATGCGCAGAAGGAACAGGGTCAAGAGGTCGATGAACCGAA
AACCCCTGCTGTAGAAGAGGCAGGAGAGACAGTTGTCGAAGAACAAGAAC
GAGATATGCAGAAGATGGATGTATCGGAGTTCAACGAAAAACCCAGGCAA
TCAAAGAAACGTCCATCACCGCCACCCCATGCAATGCCCGAGGAAGACGT
GATCGAGCCAAAGCAACCTACTGAGATGAACTTAAGTACTGAAAGCAGGG
TAGGCGTGGTCGCGCCCAAAATTGGTAATCCAGGGAAGAAGACTAAGAGA
CAACGAAATGGCGAGGATTATCATTTAGAGAAGATACAAGCTGAGCTGCA
GGTTATAAAAGACTTCCGAGAAAAGGTAGATCGAAACACCGAGATGTTCA
TTTTGAACCCAGAACACTTTCTACCTGGCAAAACGAGAAGGAGCGTTGAT
CGCTCACGACGAGAGTCATACCCCGCGCCACGGATCTCGCAGGTATCCGG
TCTGAACAGCGATAGGGTTGCGAGATGA
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