Ggra10878.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10878.t1
Unique Name	Ggra10878.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	629

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000125_pilon	contig	tig00000125_pilon:279014..280900 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10878	Ggra10878	Gracilaria gracilis GNS1m male	gene	tig00000125_pilon 279014..280900 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10878.t1.start1	Ggra10878.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000125_pilon 279014..279016 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10878.t1.CDS1	Ggra10878.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000125_pilon 279014..280900 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10878.t1.exon1	Ggra10878.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000125_pilon 279014..280900 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10878.t1.stop1	Ggra10878.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000125_pilon 280898..280900 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10878.t1	Ggra10878.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000125_pilon 279014..280900 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000125_pilon:279014..280900+
coding sequence from alignment at tig00000125_pilon:279014..280900+

mRNA sequence

>Ggra10878.t1 ID=Ggra10878.t1|Name=Ggra10878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=629bp
MSASNENESKSFNSRKLARNTASDASENEALDSIDAKQQREALVEHSTKP
QPSSRITLSNTSPKPWPMPAQNEKDASPTFRSLKERSAQDSESDFKTPQT
KFFASQNAQKSSMSSLPKSPPLEVSPVQEVFLDDVDLPSSRNIFSDSGNS
KGSKESIAVLFKRKNATRHREPEADVSAAFVDRYCSSPEEEVVSISEQES
GTFRFLKDDEVSPSSEKSFKFPSGLRNLFGDDGRNSSGRRSSRSRTPRSF
GLDSELFSPLKSTDGLGEPEGRSGGSRQGLSEPKALKASSNSSSKAALRR
PLGSRRKTFIDLSKPPLPEAVSPRLADRSIEEPSITEVEEVNKPRTSPSS
SKSTETSEEQIKVVSPLMTKGVIMRAQTHKTNVNGIRKAETGKIMSREEL
LGDRKVVFLRESPVPKSLNPAAFSEDDDVMTRRPSTLFQYSSSESEGGLP
NVSAHKLEADDGTFLGDKASLGYIYQEVQSSSSSKFSENGSSSGLVNRLG
SSFKKAKNVVARRSLTDIPELSTTDMIIPGTIDEAVCRICFVCRKKLGCR
VFVKNTGKKIKVEAEDRQRGYYLRASLFVSLLGGEEPACALNIRQSRADG
MKTSFATLWDFYQRLEKGLQELEAGHNR*

spliced messenger RNA

>Ggra10878.t1 ID=Ggra10878.t1|Name=Ggra10878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00000125_pilon:279014..280900+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCAAGCAATGAAAATGAATCCAAGTCTTTCAACTCTCGAAAGTT
AGCCAGAAACACAGCAAGTGATGCGAGCGAAAATGAAGCGCTTGATTCCA
TTGACGCGAAACAACAACGTGAAGCCCTCGTTGAGCATTCGACCAAGCCG
CAGCCGAGCAGTAGGATAACTCTGAGCAACACAAGTCCAAAGCCGTGGCC
AATGCCTGCCCAGAACGAGAAGGACGCGTCACCAACTTTTCGGTCGTTGA
AAGAGCGAAGCGCGCAAGACTCGGAGAGCGACTTCAAGACCCCGCAAACA
AAGTTTTTCGCCTCGCAGAACGCCCAGAAGTCTTCAATGTCTTCTCTACC
CAAGTCCCCTCCGCTTGAGGTTTCGCCTGTGCAGGAAGTTTTTCTGGATG
ACGTCGATCTGCCCTCGTCCAGGAACATATTCTCCGATAGTGGGAATAGC
AAAGGCAGTAAGGAATCTATTGCGGTTCTGTTCAAGAGAAAGAATGCTAC
GAGGCATAGAGAACCTGAAGCTGACGTTTCCGCTGCATTTGTAGACAGGT
ACTGCTCAAGTCCAGAGGAAGAAGTGGTGTCAATCTCTGAACAAGAGAGT
GGCACATTTCGCTTTCTAAAGGATGATGAAGTAAGTCCAAGCAGCGAGAA
AAGCTTCAAGTTTCCTTCCGGTTTGAGGAACCTGTTTGGAGACGACGGAA
GAAACTCATCGGGACGAAGGTCTTCCAGGAGCCGAACGCCCCGCAGTTTT
GGACTTGATAGTGAGTTATTCTCTCCACTCAAGTCCACCGATGGGCTGGG
TGAACCTGAAGGCAGGAGTGGTGGAAGTCGACAAGGGCTATCCGAGCCAA
AAGCATTGAAAGCTTCATCCAATTCGTCATCAAAAGCTGCTTTGCGGAGA
CCGTTGGGAAGTCGAAGGAAGACTTTCATTGACCTTTCGAAACCACCGCT
ACCTGAAGCAGTTTCTCCACGATTGGCGGACCGATCCATAGAAGAACCAA
GTATCACCGAGGTAGAGGAAGTGAACAAGCCAAGAACCAGTCCAAGCAGT
AGCAAGTCAACTGAAACATCAGAGGAACAAATCAAAGTCGTGTCTCCGTT
GATGACCAAGGGTGTGATAATGCGAGCTCAAACTCACAAGACCAATGTAA
ATGGAATTCGGAAAGCGGAGACCGGCAAGATTATGAGCCGGGAAGAGTTG
CTTGGAGACCGCAAGGTAGTATTTCTTCGAGAAAGCCCAGTACCAAAGTC
GCTCAATCCCGCTGCGTTCAGCGAGGATGATGATGTTATGACAAGGAGAC
CATCTACACTCTTCCAGTATTCTAGCTCGGAAAGTGAGGGAGGGTTACCG
AACGTCAGTGCTCACAAGTTGGAAGCTGATGATGGGACGTTTTTGGGAGA
CAAGGCATCGCTGGGCTACATCTATCAAGAAGTGCAGAGCAGTAGTAGTT
CGAAGTTCTCCGAGAATGGCAGCTCTTCTGGTCTGGTGAATCGACTCGGG
TCAAGTTTCAAAAAGGCGAAGAACGTGGTAGCCAGACGATCTTTAACAGA
TATTCCAGAGCTCAGCACCACAGATATGATTATTCCAGGAACAATTGACG
AAGCTGTGTGCAGGATTTGTTTCGTATGCCGGAAAAAGTTGGGGTGCAGA
GTGTTTGTGAAGAACACTGGTAAGAAGATTAAGGTGGAAGCAGAGGATCG
ACAAAGAGGTTACTATCTCAGAGCATCTTTATTCGTGAGTTTGTTGGGAG
GCGAAGAACCTGCGTGTGCTCTAAACATTCGGCAGAGTAGAGCAGATGGG
ATGAAGACGAGCTTTGCAACATTATGGGATTTCTATCAACGACTCGAGAA
AGGCTTGCAAGAATTAGAAGCAGGGCACAACCGGTAG

protein sequence of Ggra10878.t1

>Ggra10878.t1 ID=Ggra10878.t1|Name=Ggra10878.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=629bp
MSASNENESKSFNSRKLARNTASDASENEALDSIDAKQQREALVEHSTKP
QPSSRITLSNTSPKPWPMPAQNEKDASPTFRSLKERSAQDSESDFKTPQT
KFFASQNAQKSSMSSLPKSPPLEVSPVQEVFLDDVDLPSSRNIFSDSGNS
KGSKESIAVLFKRKNATRHREPEADVSAAFVDRYCSSPEEEVVSISEQES
GTFRFLKDDEVSPSSEKSFKFPSGLRNLFGDDGRNSSGRRSSRSRTPRSF
GLDSELFSPLKSTDGLGEPEGRSGGSRQGLSEPKALKASSNSSSKAALRR
PLGSRRKTFIDLSKPPLPEAVSPRLADRSIEEPSITEVEEVNKPRTSPSS
SKSTETSEEQIKVVSPLMTKGVIMRAQTHKTNVNGIRKAETGKIMSREEL
LGDRKVVFLRESPVPKSLNPAAFSEDDDVMTRRPSTLFQYSSSESEGGLP
NVSAHKLEADDGTFLGDKASLGYIYQEVQSSSSSKFSENGSSSGLVNRLG
SSFKKAKNVVARRSLTDIPELSTTDMIIPGTIDEAVCRICFVCRKKLGCR
VFVKNTGKKIKVEAEDRQRGYYLRASLFVSLLGGEEPACALNIRQSRADG
MKTSFATLWDFYQRLEKGLQELEAGHNR*

mRNA from alignment at tig00000125_pilon:279014..280900+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10878.t1 ID=Ggra10878.t1|Name=Ggra10878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00000125_pilon:279014..280900+ (Gracilaria gracilis GNS1m male)
ATGTCAGCAAGCAATGAAAATGAATCCAAGTCTTTCAACTCTCGAAAGTT
AGCCAGAAACACAGCAAGTGATGCGAGCGAAAATGAAGCGCTTGATTCCA
TTGACGCGAAACAACAACGTGAAGCCCTCGTTGAGCATTCGACCAAGCCG
CAGCCGAGCAGTAGGATAACTCTGAGCAACACAAGTCCAAAGCCGTGGCC
AATGCCTGCCCAGAACGAGAAGGACGCGTCACCAACTTTTCGGTCGTTGA
AAGAGCGAAGCGCGCAAGACTCGGAGAGCGACTTCAAGACCCCGCAAACA
AAGTTTTTCGCCTCGCAGAACGCCCAGAAGTCTTCAATGTCTTCTCTACC
CAAGTCCCCTCCGCTTGAGGTTTCGCCTGTGCAGGAAGTTTTTCTGGATG
ACGTCGATCTGCCCTCGTCCAGGAACATATTCTCCGATAGTGGGAATAGC
AAAGGCAGTAAGGAATCTATTGCGGTTCTGTTCAAGAGAAAGAATGCTAC
GAGGCATAGAGAACCTGAAGCTGACGTTTCCGCTGCATTTGTAGACAGGT
ACTGCTCAAGTCCAGAGGAAGAAGTGGTGTCAATCTCTGAACAAGAGAGT
GGCACATTTCGCTTTCTAAAGGATGATGAAGTAAGTCCAAGCAGCGAGAA
AAGCTTCAAGTTTCCTTCCGGTTTGAGGAACCTGTTTGGAGACGACGGAA
GAAACTCATCGGGACGAAGGTCTTCCAGGAGCCGAACGCCCCGCAGTTTT
GGACTTGATAGTGAGTTATTCTCTCCACTCAAGTCCACCGATGGGCTGGG
TGAACCTGAAGGCAGGAGTGGTGGAAGTCGACAAGGGCTATCCGAGCCAA
AAGCATTGAAAGCTTCATCCAATTCGTCATCAAAAGCTGCTTTGCGGAGA
CCGTTGGGAAGTCGAAGGAAGACTTTCATTGACCTTTCGAAACCACCGCT
ACCTGAAGCAGTTTCTCCACGATTGGCGGACCGATCCATAGAAGAACCAA
GTATCACCGAGGTAGAGGAAGTGAACAAGCCAAGAACCAGTCCAAGCAGT
AGCAAGTCAACTGAAACATCAGAGGAACAAATCAAAGTCGTGTCTCCGTT
GATGACCAAGGGTGTGATAATGCGAGCTCAAACTCACAAGACCAATGTAA
ATGGAATTCGGAAAGCGGAGACCGGCAAGATTATGAGCCGGGAAGAGTTG
CTTGGAGACCGCAAGGTAGTATTTCTTCGAGAAAGCCCAGTACCAAAGTC
GCTCAATCCCGCTGCGTTCAGCGAGGATGATGATGTTATGACAAGGAGAC
CATCTACACTCTTCCAGTATTCTAGCTCGGAAAGTGAGGGAGGGTTACCG
AACGTCAGTGCTCACAAGTTGGAAGCTGATGATGGGACGTTTTTGGGAGA
CAAGGCATCGCTGGGCTACATCTATCAAGAAGTGCAGAGCAGTAGTAGTT
CGAAGTTCTCCGAGAATGGCAGCTCTTCTGGTCTGGTGAATCGACTCGGG
TCAAGTTTCAAAAAGGCGAAGAACGTGGTAGCCAGACGATCTTTAACAGA
TATTCCAGAGCTCAGCACCACAGATATGATTATTCCAGGAACAATTGACG
AAGCTGTGTGCAGGATTTGTTTCGTATGCCGGAAAAAGTTGGGGTGCAGA
GTGTTTGTGAAGAACACTGGTAAGAAGATTAAGGTGGAAGCAGAGGATCG
ACAAAGAGGTTACTATCTCAGAGCATCTTTATTCGTGAGTTTGTTGGGAG
GCGAAGAACCTGCGTGTGCTCTAAACATTCGGCAGAGTAGAGCAGATGGG
ATGAAGACGAGCTTTGCAACATTATGGGATTTCTATCAACGACTCGAGAA
AGGCTTGCAAGAATTAGAAGCAGGGCACAACCGGTAG

Coding sequence (CDS) from alignment at tig00000125_pilon:279014..280900+

>Ggra10878.t1 ID=Ggra10878.t1|Name=Ggra10878.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1887bp|location=Sequence derived from alignment at tig00000125_pilon:279014..280900+ (Gracilaria gracilis GNS1m male)
ATGTCAGCAAGCAATGAAAATGAATCCAAGTCTTTCAACTCTCGAAAGTT
AGCCAGAAACACAGCAAGTGATGCGAGCGAAAATGAAGCGCTTGATTCCA
TTGACGCGAAACAACAACGTGAAGCCCTCGTTGAGCATTCGACCAAGCCG
CAGCCGAGCAGTAGGATAACTCTGAGCAACACAAGTCCAAAGCCGTGGCC
AATGCCTGCCCAGAACGAGAAGGACGCGTCACCAACTTTTCGGTCGTTGA
AAGAGCGAAGCGCGCAAGACTCGGAGAGCGACTTCAAGACCCCGCAAACA
AAGTTTTTCGCCTCGCAGAACGCCCAGAAGTCTTCAATGTCTTCTCTACC
CAAGTCCCCTCCGCTTGAGGTTTCGCCTGTGCAGGAAGTTTTTCTGGATG
ACGTCGATCTGCCCTCGTCCAGGAACATATTCTCCGATAGTGGGAATAGC
AAAGGCAGTAAGGAATCTATTGCGGTTCTGTTCAAGAGAAAGAATGCTAC
GAGGCATAGAGAACCTGAAGCTGACGTTTCCGCTGCATTTGTAGACAGGT
ACTGCTCAAGTCCAGAGGAAGAAGTGGTGTCAATCTCTGAACAAGAGAGT
GGCACATTTCGCTTTCTAAAGGATGATGAAGTAAGTCCAAGCAGCGAGAA
AAGCTTCAAGTTTCCTTCCGGTTTGAGGAACCTGTTTGGAGACGACGGAA
GAAACTCATCGGGACGAAGGTCTTCCAGGAGCCGAACGCCCCGCAGTTTT
GGACTTGATAGTGAGTTATTCTCTCCACTCAAGTCCACCGATGGGCTGGG
TGAACCTGAAGGCAGGAGTGGTGGAAGTCGACAAGGGCTATCCGAGCCAA
AAGCATTGAAAGCTTCATCCAATTCGTCATCAAAAGCTGCTTTGCGGAGA
CCGTTGGGAAGTCGAAGGAAGACTTTCATTGACCTTTCGAAACCACCGCT
ACCTGAAGCAGTTTCTCCACGATTGGCGGACCGATCCATAGAAGAACCAA
GTATCACCGAGGTAGAGGAAGTGAACAAGCCAAGAACCAGTCCAAGCAGT
AGCAAGTCAACTGAAACATCAGAGGAACAAATCAAAGTCGTGTCTCCGTT
GATGACCAAGGGTGTGATAATGCGAGCTCAAACTCACAAGACCAATGTAA
ATGGAATTCGGAAAGCGGAGACCGGCAAGATTATGAGCCGGGAAGAGTTG
CTTGGAGACCGCAAGGTAGTATTTCTTCGAGAAAGCCCAGTACCAAAGTC
GCTCAATCCCGCTGCGTTCAGCGAGGATGATGATGTTATGACAAGGAGAC
CATCTACACTCTTCCAGTATTCTAGCTCGGAAAGTGAGGGAGGGTTACCG
AACGTCAGTGCTCACAAGTTGGAAGCTGATGATGGGACGTTTTTGGGAGA
CAAGGCATCGCTGGGCTACATCTATCAAGAAGTGCAGAGCAGTAGTAGTT
CGAAGTTCTCCGAGAATGGCAGCTCTTCTGGTCTGGTGAATCGACTCGGG
TCAAGTTTCAAAAAGGCGAAGAACGTGGTAGCCAGACGATCTTTAACAGA
TATTCCAGAGCTCAGCACCACAGATATGATTATTCCAGGAACAATTGACG
AAGCTGTGTGCAGGATTTGTTTCGTATGCCGGAAAAAGTTGGGGTGCAGA
GTGTTTGTGAAGAACACTGGTAAGAAGATTAAGGTGGAAGCAGAGGATCG
ACAAAGAGGTTACTATCTCAGAGCATCTTTATTCGTGAGTTTGTTGGGAG
GCGAAGAACCTGCGTGTGCTCTAAACATTCGGCAGAGTAGAGCAGATGGG
ATGAAGACGAGCTTTGCAACATTATGGGATTTCTATCAACGACTCGAGAA
AGGCTTGCAAGAATTAGAAGCAGGGCACAACCGGTAG