Ggra10538.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10538.t1
Unique Name	Ggra10538.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	277

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:54421..55251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72664.XP_006394719.1
Max annot lvl	35493\|Streptophyta
GOs	GO:0000902,GO:0000904,GO:0001558,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008544,GO:0009058,GO:0009059,GO:0009330,GO:0009653,GO:0009888,GO:0009913,GO:0009987,GO:0010026,GO:0010090,GO:0016043,GO:0022402,GO:0022622,GO:0030154,GO:0030307,GO:0030855,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0040008,GO:0042023,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0044786,GO:0045927,GO:0046483,GO:0048364,GO:0048367,GO:0048468,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051276,GO:0060429,GO:0065007,GO:0071704,GO:0071840,GO:0090304,GO:0090558,GO:0090626,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1901576
Evalue	2.3e-14
EggNOG OGs	28MC6@1\|root,2QTVM@2759\|Eukaryota,37MCB@33090\|Viridiplantae,3GCGZ@35493\|Streptophyta,3HTV4@3699\|Brassicales
Description	double-stranded DNA binding
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10538	Ggra10538	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 54421..55251 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10538.t1.start1	Ggra10538.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 54421..54423 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10538.t1.CDS1	Ggra10538.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 54421..55251 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10538.t1.exon1	Ggra10538.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 54421..55251 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10538.t1.stop1	Ggra10538.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 55249..55251 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10538.t1	Ggra10538.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 54421..55251 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:54421..55251+
coding sequence from alignment at tig00000904_pilon:54421..55251+

mRNA sequence

>Ggra10538.t1 ID=Ggra10538.t1|Name=Ggra10538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=277bp
MSESSSDDGFFSDSSGKLDLLSVKQNLQSVGDEANLANSSEAHKSTSNAQ
QDSSRDEPAWVLDHSQSRPTDQENRRRVLASLSEDDGDESIIDLVSQEPS
FEVAQKPIIEKKDNSGQESVPKPQEQQKPARAPRSSLPLTVASKIDDSLV
LLQSSDESLDLSGDVGAVGRVKVSEEGLFFDIKGVVYKVTTHATNTACVV
QMVDDEARVTSVMDEVLTLHMDRNLFASDEIIINGNLDDHSDQESMFEED
RRNSEQPVRGKRKKGPASPASKARLA*

spliced messenger RNA

>Ggra10538.t1 ID=Ggra10538.t1|Name=Ggra10538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000904_pilon:54421..55251+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAGAGCAGCAGCGATGATGGGTTTTTTAGTGATAGTTCTGGTAA
GCTTGATCTTCTATCAGTGAAGCAAAACCTACAATCAGTTGGAGATGAAG
CGAATCTGGCCAATTCATCTGAAGCACACAAGAGCACCAGCAATGCTCAG
CAGGATTCGAGCCGAGATGAACCGGCATGGGTCTTGGACCATTCTCAATC
TCGTCCAACAGATCAAGAGAATCGTCGAAGAGTTTTAGCCTCATTATCGG
AAGATGATGGTGATGAGAGCATTATTGACTTAGTTTCACAGGAACCGAGT
TTTGAAGTAGCGCAGAAACCAATCATCGAAAAGAAAGACAACAGCGGCCA
AGAGTCTGTACCAAAGCCGCAAGAACAGCAGAAGCCCGCCCGTGCCCCAA
GAAGTTCTCTCCCACTCACGGTTGCATCAAAAATTGACGATTCTTTGGTT
CTGTTGCAAAGCAGTGACGAAAGTCTCGATCTTAGTGGCGATGTCGGAGC
TGTTGGACGAGTGAAGGTTTCCGAGGAAGGCCTCTTTTTCGACATAAAAG
GGGTCGTATATAAAGTGACTACTCACGCAACCAACACGGCCTGTGTTGTT
CAAATGGTTGACGATGAAGCTCGTGTCACATCAGTCATGGATGAAGTGTT
AACATTGCACATGGATAGAAACCTCTTCGCTTCAGATGAGATCATTATAA
ATGGAAACTTGGATGATCACAGTGACCAAGAAAGCATGTTTGAGGAAGAC
AGACGAAACAGTGAGCAGCCTGTGCGGGGAAAGCGGAAGAAGGGGCCCGC
TTCACCTGCTTCGAAGGCGAGGCTCGCTTAG

protein sequence of Ggra10538.t1

>Ggra10538.t1 ID=Ggra10538.t1|Name=Ggra10538.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=277bp
MSESSSDDGFFSDSSGKLDLLSVKQNLQSVGDEANLANSSEAHKSTSNAQ
QDSSRDEPAWVLDHSQSRPTDQENRRRVLASLSEDDGDESIIDLVSQEPS
FEVAQKPIIEKKDNSGQESVPKPQEQQKPARAPRSSLPLTVASKIDDSLV
LLQSSDESLDLSGDVGAVGRVKVSEEGLFFDIKGVVYKVTTHATNTACVV
QMVDDEARVTSVMDEVLTLHMDRNLFASDEIIINGNLDDHSDQESMFEED
RRNSEQPVRGKRKKGPASPASKARLA*

mRNA from alignment at tig00000904_pilon:54421..55251+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10538.t1 ID=Ggra10538.t1|Name=Ggra10538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000904_pilon:54421..55251+ (Gracilaria gracilis GNS1m male)
ATGTCCGAGAGCAGCAGCGATGATGGGTTTTTTAGTGATAGTTCTGGTAA
GCTTGATCTTCTATCAGTGAAGCAAAACCTACAATCAGTTGGAGATGAAG
CGAATCTGGCCAATTCATCTGAAGCACACAAGAGCACCAGCAATGCTCAG
CAGGATTCGAGCCGAGATGAACCGGCATGGGTCTTGGACCATTCTCAATC
TCGTCCAACAGATCAAGAGAATCGTCGAAGAGTTTTAGCCTCATTATCGG
AAGATGATGGTGATGAGAGCATTATTGACTTAGTTTCACAGGAACCGAGT
TTTGAAGTAGCGCAGAAACCAATCATCGAAAAGAAAGACAACAGCGGCCA
AGAGTCTGTACCAAAGCCGCAAGAACAGCAGAAGCCCGCCCGTGCCCCAA
GAAGTTCTCTCCCACTCACGGTTGCATCAAAAATTGACGATTCTTTGGTT
CTGTTGCAAAGCAGTGACGAAAGTCTCGATCTTAGTGGCGATGTCGGAGC
TGTTGGACGAGTGAAGGTTTCCGAGGAAGGCCTCTTTTTCGACATAAAAG
GGGTCGTATATAAAGTGACTACTCACGCAACCAACACGGCCTGTGTTGTT
CAAATGGTTGACGATGAAGCTCGTGTCACATCAGTCATGGATGAAGTGTT
AACATTGCACATGGATAGAAACCTCTTCGCTTCAGATGAGATCATTATAA
ATGGAAACTTGGATGATCACAGTGACCAAGAAAGCATGTTTGAGGAAGAC
AGACGAAACAGTGAGCAGCCTGTGCGGGGAAAGCGGAAGAAGGGGCCCGC
TTCACCTGCTTCGAAGGCGAGGCTCGCTTAG

Coding sequence (CDS) from alignment at tig00000904_pilon:54421..55251+

>Ggra10538.t1 ID=Ggra10538.t1|Name=Ggra10538.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00000904_pilon:54421..55251+ (Gracilaria gracilis GNS1m male)
ATGTCCGAGAGCAGCAGCGATGATGGGTTTTTTAGTGATAGTTCTGGTAA
GCTTGATCTTCTATCAGTGAAGCAAAACCTACAATCAGTTGGAGATGAAG
CGAATCTGGCCAATTCATCTGAAGCACACAAGAGCACCAGCAATGCTCAG
CAGGATTCGAGCCGAGATGAACCGGCATGGGTCTTGGACCATTCTCAATC
TCGTCCAACAGATCAAGAGAATCGTCGAAGAGTTTTAGCCTCATTATCGG
AAGATGATGGTGATGAGAGCATTATTGACTTAGTTTCACAGGAACCGAGT
TTTGAAGTAGCGCAGAAACCAATCATCGAAAAGAAAGACAACAGCGGCCA
AGAGTCTGTACCAAAGCCGCAAGAACAGCAGAAGCCCGCCCGTGCCCCAA
GAAGTTCTCTCCCACTCACGGTTGCATCAAAAATTGACGATTCTTTGGTT
CTGTTGCAAAGCAGTGACGAAAGTCTCGATCTTAGTGGCGATGTCGGAGC
TGTTGGACGAGTGAAGGTTTCCGAGGAAGGCCTCTTTTTCGACATAAAAG
GGGTCGTATATAAAGTGACTACTCACGCAACCAACACGGCCTGTGTTGTT
CAAATGGTTGACGATGAAGCTCGTGTCACATCAGTCATGGATGAAGTGTT
AACATTGCACATGGATAGAAACCTCTTCGCTTCAGATGAGATCATTATAA
ATGGAAACTTGGATGATCACAGTGACCAAGAAAGCATGTTTGAGGAAGAC
AGACGAAACAGTGAGCAGCCTGTGCGGGGAAAGCGGAAGAAGGGGCCCGC
TTCACCTGCTTCGAAGGCGAGGCTCGCTTAG