Ggra10530.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10530.t1
Unique NameGgra10530.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:39557..40576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707172.1
Preferred nameFBXO9
PFAMsF-box-like
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K10047,ko:K10295
KEGG ReactionR01185,R01186,R01187,R07674
KEGG Pathwayko00053,ko00562,ko01100,ko01110,ko04070,map00053,map00562,map01100,map01110,map04070
KEGG ModuleM00114,M00131
GOsGO:0000151,GO:0000209,GO:0002376,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006417,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009889,GO:0009966,GO:0009987,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010608,GO:0010646,GO:0016567,GO:0016740,GO:0019005,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023051,GO:0030154,GO:0030163,GO:0030674,GO:0031146,GO:0031323,GO:0031326,GO:0031461,GO:0032006,GO:0032268,GO:0032446,GO:0032502,GO:0032991,GO:0034248,GO:0036211,GO:0042221,GO:0042995,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0045444,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051597,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0065007,GO:0070647,GO:0070887,GO:0071310,GO:0071406,GO:0071704,GO:0080090,GO:0090406,GO:0120025,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902531,GO:1990234,GO:2000112
Evalue1.6e-37
EggNOG OGsKOG2997@1|root,KOG2997@2759|Eukaryota
EC3.1.3.25,3.1.3.93
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10530Ggra10530Gracilaria gracilis GNS1m malegenetig00000904_pilon 39557..40576 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10530.t1.stop1Ggra10530.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 39557..39559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10530.t1.CDS1Ggra10530.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 39557..40576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10530.t1.exon1Ggra10530.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 39557..40576 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10530.t1.start1Ggra10530.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 40574..40576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10530.t1Ggra10530.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 39557..40576 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10530.t1 ID=Ggra10530.t1|Name=Ggra10530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MIAAEPKTKPWLQLYQTDFANLRLLHKNQYDPLVEQALEQCVSDTPEPEQ
PTQPKLEILALPGEVLSAVCSYLDAENLATLAQVNSAFISHAYDPKHWRR
IAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTS
SRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVRDPHG
KPVGSDREEARPVVGSYTFDEQRREVSVVLPIQHPKFPHMRGGHNVMEFT
LSSTVDGAFDRLHLINHFAEMDNSNDSQVASVMFPNDSFVERPFRLIPLH
SFRERIYREFPTDDAVDLAQWFEMKKAARAEQRIKRARR*
back to top

spliced messenger RNA

>Ggra10530.t1 ID=Ggra10530.t1|Name=Ggra10530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000904_pilon:39557..40576- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCTGCCGAACCAAAAACAAAGCCTTGGCTCCAGCTATACCAAAC
CGACTTTGCCAACCTCCGTTTGCTGCACAAGAACCAGTACGACCCGCTCG
TCGAACAGGCTCTGGAACAATGTGTGTCCGACACACCAGAACCGGAACAA
CCCACACAGCCCAAGCTCGAAATCCTCGCGCTACCAGGCGAAGTGCTATC
TGCAGTATGCTCCTATCTTGACGCGGAGAACTTGGCCACTCTGGCGCAAG
TCAACTCGGCGTTTATCTCGCATGCGTACGATCCGAAGCACTGGCGCCGC
ATTGCGCAGGATACTTGGCCTTCTGAGAGCCATCGAGAGCTACAAAAGCA
TCTGTACTCGTACAAGACATGGCGGCTACTCTGTACGCAGCGTCCTCGTT
TGCGTACAAACGGGTTGTTTGTTCTGAGACATCAGTTTACCAAGACTTCT
TCGCGTTTCGCGGCGTCGGAGCCGCTAGTTCCCGTTTTTCTTGTCACGTA
TCATAGGTTTCTTCGCTTTTATTCGTCGGGTACTGTTGTAGGTCTCACTA
CGCCTGAACCTCCTCACCTTGCGTATCGACGCGTTCGTGACCCTCATGGA
AAGCCCGTTGGTTCGGACAGGGAGGAGGCGCGTCCAGTTGTTGGTAGTTA
CACGTTTGATGAACAGAGGAGAGAAGTGAGCGTTGTGTTGCCCATACAAC
ACCCAAAGTTCCCGCATATGAGAGGAGGCCATAATGTGATGGAGTTTACT
TTATCAAGCACAGTTGATGGCGCATTCGATAGGCTTCATCTGATCAACCA
TTTCGCCGAGATGGATAATTCAAACGACTCCCAAGTGGCGTCTGTCATGT
TCCCTAACGATTCATTTGTTGAACGACCTTTTCGTTTGATTCCGCTGCAT
AGCTTTCGTGAACGAATCTATCGTGAATTCCCAACGGACGACGCTGTTGA
CCTGGCTCAATGGTTCGAAATGAAGAAAGCTGCGCGCGCTGAACAGAGGA
TCAAGCGCGCACGTCGGTGA
back to top

protein sequence of Ggra10530.t1

>Ggra10530.t1 ID=Ggra10530.t1|Name=Ggra10530.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MIAAEPKTKPWLQLYQTDFANLRLLHKNQYDPLVEQALEQCVSDTPEPEQ
PTQPKLEILALPGEVLSAVCSYLDAENLATLAQVNSAFISHAYDPKHWRR
IAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTS
SRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVRDPHG
KPVGSDREEARPVVGSYTFDEQRREVSVVLPIQHPKFPHMRGGHNVMEFT
LSSTVDGAFDRLHLINHFAEMDNSNDSQVASVMFPNDSFVERPFRLIPLH
SFRERIYREFPTDDAVDLAQWFEMKKAARAEQRIKRARR*
back to top

mRNA from alignment at tig00000904_pilon:39557..40576-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10530.t1 ID=Ggra10530.t1|Name=Ggra10530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000904_pilon:39557..40576- (Gracilaria gracilis GNS1m male)
ATGATTGCTGCCGAACCAAAAACAAAGCCTTGGCTCCAGCTATACCAAAC
CGACTTTGCCAACCTCCGTTTGCTGCACAAGAACCAGTACGACCCGCTCG
TCGAACAGGCTCTGGAACAATGTGTGTCCGACACACCAGAACCGGAACAA
CCCACACAGCCCAAGCTCGAAATCCTCGCGCTACCAGGCGAAGTGCTATC
TGCAGTATGCTCCTATCTTGACGCGGAGAACTTGGCCACTCTGGCGCAAG
TCAACTCGGCGTTTATCTCGCATGCGTACGATCCGAAGCACTGGCGCCGC
ATTGCGCAGGATACTTGGCCTTCTGAGAGCCATCGAGAGCTACAAAAGCA
TCTGTACTCGTACAAGACATGGCGGCTACTCTGTACGCAGCGTCCTCGTT
TGCGTACAAACGGGTTGTTTGTTCTGAGACATCAGTTTACCAAGACTTCT
TCGCGTTTCGCGGCGTCGGAGCCGCTAGTTCCCGTTTTTCTTGTCACGTA
TCATAGGTTTCTTCGCTTTTATTCGTCGGGTACTGTTGTAGGTCTCACTA
CGCCTGAACCTCCTCACCTTGCGTATCGACGCGTTCGTGACCCTCATGGA
AAGCCCGTTGGTTCGGACAGGGAGGAGGCGCGTCCAGTTGTTGGTAGTTA
CACGTTTGATGAACAGAGGAGAGAAGTGAGCGTTGTGTTGCCCATACAAC
ACCCAAAGTTCCCGCATATGAGAGGAGGCCATAATGTGATGGAGTTTACT
TTATCAAGCACAGTTGATGGCGCATTCGATAGGCTTCATCTGATCAACCA
TTTCGCCGAGATGGATAATTCAAACGACTCCCAAGTGGCGTCTGTCATGT
TCCCTAACGATTCATTTGTTGAACGACCTTTTCGTTTGATTCCGCTGCAT
AGCTTTCGTGAACGAATCTATCGTGAATTCCCAACGGACGACGCTGTTGA
CCTGGCTCAATGGTTCGAAATGAAGAAAGCTGCGCGCGCTGAACAGAGGA
TCAAGCGCGCACGTCGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:39557..40576-

>Ggra10530.t1 ID=Ggra10530.t1|Name=Ggra10530.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000904_pilon:39557..40576- (Gracilaria gracilis GNS1m male)
ATGATTGCTGCCGAACCAAAAACAAAGCCTTGGCTCCAGCTATACCAAAC
CGACTTTGCCAACCTCCGTTTGCTGCACAAGAACCAGTACGACCCGCTCG
TCGAACAGGCTCTGGAACAATGTGTGTCCGACACACCAGAACCGGAACAA
CCCACACAGCCCAAGCTCGAAATCCTCGCGCTACCAGGCGAAGTGCTATC
TGCAGTATGCTCCTATCTTGACGCGGAGAACTTGGCCACTCTGGCGCAAG
TCAACTCGGCGTTTATCTCGCATGCGTACGATCCGAAGCACTGGCGCCGC
ATTGCGCAGGATACTTGGCCTTCTGAGAGCCATCGAGAGCTACAAAAGCA
TCTGTACTCGTACAAGACATGGCGGCTACTCTGTACGCAGCGTCCTCGTT
TGCGTACAAACGGGTTGTTTGTTCTGAGACATCAGTTTACCAAGACTTCT
TCGCGTTTCGCGGCGTCGGAGCCGCTAGTTCCCGTTTTTCTTGTCACGTA
TCATAGGTTTCTTCGCTTTTATTCGTCGGGTACTGTTGTAGGTCTCACTA
CGCCTGAACCTCCTCACCTTGCGTATCGACGCGTTCGTGACCCTCATGGA
AAGCCCGTTGGTTCGGACAGGGAGGAGGCGCGTCCAGTTGTTGGTAGTTA
CACGTTTGATGAACAGAGGAGAGAAGTGAGCGTTGTGTTGCCCATACAAC
ACCCAAAGTTCCCGCATATGAGAGGAGGCCATAATGTGATGGAGTTTACT
TTATCAAGCACAGTTGATGGCGCATTCGATAGGCTTCATCTGATCAACCA
TTTCGCCGAGATGGATAATTCAAACGACTCCCAAGTGGCGTCTGTCATGT
TCCCTAACGATTCATTTGTTGAACGACCTTTTCGTTTGATTCCGCTGCAT
AGCTTTCGTGAACGAATCTATCGTGAATTCCCAACGGACGACGCTGTTGA
CCTGGCTCAATGGTTCGAAATGAAGAAAGCTGCGCGCGCTGAACAGAGGA
TCAAGCGCGCACGTCGGTGA
back to top