Ggra10530.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra10530.t1
Unique Name	Ggra10530.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	340

Homology

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BLAST of Ggra10530.t1 vs. uniprot
Match: A0A2V3J0C4 (F-box only protein 9 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0C4_9FLOR)

HSP 1 Score: 416 bits (1070), Expect = 6.900e-143
Identity = 205/336 (61.01%), Postives = 256/336 (76.19%), Query Frame = 0

Query:    8 TKPWLQLYQTDFANLRLLHKNQYDPLVEQALEQCVSDTP-------EPEQPTQPKLEILALPGEVLSAVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVRDPHGKPVGSDREEARPVVGSYTFDEQRREVSVVLPIQHPKFPHMRGGHNVMEFTLSSTVDGAFDRLHLINHFAEMDNSNDSQVASVMFPNDSFVERPFRLIPLHSFRERIYREFPTDDAVDLAQWFEMKKAARAEQRIKR 336
            ++PW  LYQTDFA LR   + ++        E   S +P       E +  T+ K +I +LP EVLS +CS+L+AE L  LAQVNSA ISHAYDPKHWRRIA++TWPSE  REL+KHLYSYKTWRLLCTQRPRLRTN LFVL+HQFTKT+SRFAASEP  PVFLVTY+RFLRFY+SGTV+ LTTPE PHLAYRRVR  HG+  G D++E RP+ GSY+FDE  R+V + LP++H KFP+MR G   M+F L ST  GA+DRL+L +HFA M++S+    +++++P D F ++PFRL+PL  FR+RIYREFP +D  DLAQW+EMKKAARAEQ+ +R
Sbjct:    6 SRPWFHLYQTDFARLRSSQEKEHGLFQSSDAEPYSSGSPTQAEQDSECDSQTESKFDITSLPAEVLSTICSFLEAEQLCNLAQVNSALISHAYDPKHWRRIARETWPSECERELRKHLYSYKTWRLLCTQRPRLRTNALFVLQHQFTKTASRFAASEPQAPVFLVTYYRFLRFYTSGTVMSLTTPEAPHLAYRRVRTFHGRASGPDKDETRPLTGSYSFDESTRQVRIELPMKHHKFPNMRSGKVFMDFDLHSTTHGAYDRLYLRSHFAMMEDSDFGGDSNILYPCDWFEDKPFRLVPLLGFRDRIYREFPKNDDRDLAQWYEMKKAARAEQKNRR 341

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BLAST of Ggra10530.t1 vs. uniprot
Match: R7QL31 (F-box domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL31_CHOCR)

HSP 1 Score: 317 bits (811), Expect = 1.100e-103
Identity = 166/338 (49.11%), Postives = 223/338 (65.98%), Query Frame = 0

Query:    9 KPWLQLYQTDFANLRLLHKNQYDPLVEQALEQCVSDTPEP--------EQPTQPKLEILALPGEVLSAVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVRDPHGKPVGS-DREEARPVVGSYTFDEQRREVSVVLPIQHPKFPHMRGGHNVMEFTLSSTVDGAFDRLHLINHFAEMDNSNDSQVASVMFPNDSFVERPFRLIPLHSFRERIYREFPTDDAVDLAQWFEMKKAARAEQRIKRA 337
            KPWL L+QTDF +L L    +  P          SD PEP        ++P  P   +L+LP EVL+++ S L+ E+L+  AQV + ++SHAY+P+HWRRIA+ TWP +    L+  LY YKTWRLL T+RPRLRTN ++V RHQ+ KTSSR A +EP  PVFLVTY+R LRFY+ GTVV LT+PE PH+AY+RVR  H   + S DR++  P +G+Y  DE+  +V V LP+  PKFP MR G   M F+L+ TV GAFDRL L  H+A MD+     V+   + +     +PFRL+P+  FR+++YREFP DD  DL QW+EMK+A+RA +R + A
Sbjct:    8 KPWLGLFQTDFVSL-LEEPKRPSPAA------LPSDQPEPRSEAGPSTDEPAAPVYTVLSLPSEVLNSIFSRLEPEHLSAAAQVCNKWLSHAYEPRHWRRIARRTWPGDDAASLEHMLYEYKTWRLLATRRPRLRTNAIYVSRHQYAKTSSRAATAEPQAPVFLVTYYRLLRFYTDGTVVALTSPELPHVAYKRVRRWHSSALSSVDRDKPAPSIGTYELDERSLDVRVALPMSQPKFPAMRTGTMYMRFSLAGTVSGAFDRLFLTEHYAIMDHDGGDVVS---YGSHELHGKPFRLVPVLGFRDKVYREFPLDDHKDLEQWYEMKRASRAAKRQRAA 335

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BLAST of Ggra10530.t1 vs. uniprot
Match: A0A7S3EQU2 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EQU2_9RHOD)

HSP 1 Score: 132 bits (331), Expect = 3.270e-32
Identity = 96/319 (30.09%), Postives = 155/319 (48.59%), Query Frame = 0

Query:    9 KPWLQLYQTDFANLRLLHKN-QYDPLVEQALEQCVSDTPEPEQPTQPKLEILALPGEVLSAVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLY--SYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVRDPHGKPVGSDREEARPVVGSYTFDEQRREVSVVLPIQHPKFPHMRGGHNVMEFTLSSTVDGAFDRLHLINHFAEMDNSNDSQVASVMFPNDSFVERPFRLIPLHSFRERIYREFPTDDAV--DLAQWF 322
            +PWL+LY     NLR   +  + + +V+  LE    +    E   + K ++  L GE+L  V   LDA  L+  + V   +++ AY P  WRRI   TWP ++ RE    L   +Y +WR +  +RPR+R +GL++LR+ F + SS            L+ Y+R+ RF++ GT   L TP+ P  A  R+          D ++  P +GSY  DE    VS+  P   P++P M+    + E  LS TVDGA + L + +  A +DN+         F      +RPF+ +    F+     +F  ++ +  +  +WF
Sbjct:   16 RPWLELY---CQNLRAAQEEGEEEEVVDSELEGVGEEA---EGSEEEKDDLPLLQGEILERVFLRLDAAQLSKASMVCRDWMTVAYQPHLWRRICLMTWPKQTARENLAILLERNYGSWRQMFLKRPRVRYDGLYILRNIFYRGSS------------LMVYYRYFRFFADGTCTVLITPDRPEKAVSRMSKNWTPKGPQDAQKLLPNIGSYHLDEDLLTVSLQAPTYQPRYPLMKKSIVMYEMELSETVDGARNLLSVASQAAIVDNNEYCHYDCRKF------DRPFQFVAFDGFKRTCQVKFRNENIIRNNKVKWF 310

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BLAST of Ggra10530.t1 vs. uniprot
Match: F-box only protein 9-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B8CAE (F-box only protein 9-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B8CAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.910e-10
Identity = 52/180 (28.89%), Postives = 88/180 (48.89%), Query Frame = 0

Query:   21 NLRLLHKNQYDPLVEQALEQCVSDTPEPEQPTQPKLEILALPGEVLS-----AVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRV 195
            N+ +    + + +V++  +  V    EPE PT  K  I ALP E+L       V  +LD  +L  L QV   F + A D + WR      W       L   +    +WR +  +R  +  NG+++ +  +T+ S      +   P  L+ Y+R+LRF++ G+V+ LT+P+ PHL+  R+
Sbjct:  135 NMNIYRSKELECVVKEFDKMSVKGICEPEFPTT-KTHISALPAELLMYIFKWVVSLHLDLRSLERLGQVCRGFYALARDTEIWRLACLRVWGVN----LGSTVSWNGSWREMYLKRAHILYNGVYISKVSYTRPSEP-TFEQHYTPYQLIIYYRYLRFFTDGSVLFLTSPDEPHLSIPRL 308

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BLAST of Ggra10530.t1 vs. uniprot
Match: A0A6S7J265 (F-box only 9-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J265_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 1.110e-9
Identity = 52/180 (28.89%), Postives = 86/180 (47.78%), Query Frame = 0

Query:   21 NLRLLHKNQYDPLVEQALEQCVSDTPEPEQPTQPKLEILALPGEVLSAVCSY-----LDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRV 195
            N+ L      + +V    +  V    EPE PT  K  I ALP E+L  +  +     LD  +L  +AQV   F + A D + WR      W       L   +    +WR +  +R  +  NG+++ +  +T+ S      +   P  L+ Y+R+LRF++ G+V+ LT+PE PHL+  ++
Sbjct:  132 NMNLYTSKDLEDVVRDFDKLSVKGICEPEFPTT-KTHISALPAELLMYIFKWVVSQRLDLRSLERIAQVCKGFYALARDAEIWRLACIRIWGVN----LGSTVSWNGSWREMYLKRAHVLCNGVYISKVSYTRPSEP-TFYQQYTPYQLIIYYRYLRFFTDGSVLFLTSPEEPHLSLSKL 305

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BLAST of Ggra10530.t1 vs. uniprot
Match: F-box only protein 9 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBAE94 (F-box only protein 9 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBAE94)

HSP 1 Score: 70.1 bits (170), Expect = 1.140e-9
Identity = 54/158 (34.18%), Postives = 78/158 (49.37%), Query Frame = 0

Query:   53 QPKLE-----ILALPGEVLS-----AVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFL----VTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVR 196
            QP+ E     I  LP EV++      V S LD  +L  L+ V   F   A DP+ WR I    W   S++     L  Y +WR +  +RPR+R +G+++     +KT+      E L   +     V Y+R+LRF+S G V+ LTTPE P     R+R
Sbjct:  167 QPEFETTQTHISDLPWEVVAYIFRWVVSSELDVRSLEQLSLVCRGFYICARDPEIWRLICLKVWGRSSNK-----LLPYTSWRQMFLERPRVRFDGVYI-----SKTTYIRQGEESLDGFYRAWHQVEYYRYLRFFSDGQVMMLTTPEEPQTIVGRLR 314

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BLAST of Ggra10530.t1 vs. uniprot
Match: F-box only protein 9-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0349F8 (F-box only protein 9-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0349F8)

HSP 1 Score: 68.9 bits (167), Expect = 2.600e-9
Identity = 54/187 (28.88%), Postives = 93/187 (49.73%), Query Frame = 0

Query:   14 LYQTDFANLRLLHKNQYDPLVEQALEQCVSDTPEPEQPTQPKLEILALPGEVLS-----AVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRV 195
            L +T F NL L    + + +V++  +  V+   EP+ P+  +  I ALP E+L       V  +LD  +L  L+QV   F + A DP+ WR      W       L   +    +WR +  +R  L  NG+++ R  +T+ S      +   P  L+ Y+R+LRF++ GTV+ LT+ + P ++  ++
Sbjct:  119 LEETGF-NLCLYRSKELEDVVKEFDKMRVTGICEPKFPSS-QTHISALPAELLMYIFKWVVSVHLDLRSLEKLSQVCKGFYALARDPEIWRLSCVRIWGVN----LGSVISWNGSWREMFLKRAHLSYNGVYISRISYTRPSEP-TFEQQYTPYQLIIYYRYLRFFTDGTVLFLTSSDEPQVSVSKL 298

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BLAST of Ggra10530.t1 vs. uniprot
Match: A0A0V1MS49 (F-box only protein 9 (Fragment) n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V1MS49_9BILA)

HSP 1 Score: 69.3 bits (168), Expect = 2.830e-9
Identity = 67/265 (25.28%), Postives = 105/265 (39.62%), Query Frame = 0

Query:   53 QPKLEILALPGEVLS-----AVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVRDPHGKPVGSDREEARPVVGSYTFDEQRREVSVVLPIQHPKFPHMRGGHN----------VMEFTLSSTVDGAFDRLHLINHFAEMDNSNDSQVASVMFPNDSFVERPFRLIPLHSF 302
            Q    I ALP E+L       V + LD   L  L+ V   F   A +   W  I    W S     L     ++ +WR +   R  L  NGL+V +  + +   R    +   P  +V ++R+LRF+S G+V+ +TT +PP +    +R    K        A  V+G +T D           + +     +RGG            +ME  L +T  G ++ L  +N+       +  +V S    ND     PF    + SF
Sbjct:  198 QHSTHISALPVEILMQIFRLVVSADLDVAQLEQLSMVCGGFYCLARNSDLWHAICAKIWKSR----LGPLPSNFISWREVYMNRAHLHFNGLYVSKASYVRMGERCCRDQFYNPWHVVVHYRYLRFFSDGSVLMITTADPPRIVVPMMRTKVAK-------HATAVIGQFTMDGFNCISMSFKRVTNGSGEVIRGGRVPVALTSTQSLLMELQLENTKHGQYNFLSWVNYQVMFKYKSAPEVVSKCCLNDKDFP-PFNFYRVKSF 450

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BLAST of Ggra10530.t1 vs. uniprot
Match: A0A6G4ZYX0 (Putative f-box only protein 9 n=8 Tax=Ixodidae TaxID=6939 RepID=A0A6G4ZYX0_RHIMP)

HSP 1 Score: 68.6 bits (166), Expect = 3.050e-9
Identity = 47/149 (31.54%), Postives = 70/149 (46.98%), Query Frame = 0

Query:   53 QPKLEILALPGEVLS-----AVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVR 196
            Q    I  LP EV        V S LD  +L  +++V   F   A DP+ W      TW      E    L  Y +WR +   RPR+  NG+++ R  + +            P FLV Y R+LRF++ G V+ LTTP+ P+++  ++R
Sbjct:  119 QKATHISDLPREVFMFILRWVVSSDLDILSLEAVSKVCRGFYLCARDPELWHTACIRTWG-----EGCGQLNQYDSWREMYICRPRICHNGVYINRTTYVRHGESSFQDSSYRPCFLVEYFRYLRFFTDGVVLMLTTPDNPYVSLGKLR 262

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BLAST of Ggra10530.t1 vs. uniprot
Match: F-box only protein 9-like isoform X1 n=5 Tax=Rhipicephalus TaxID=34630 RepID=UPI0018957EA4 (F-box only protein 9-like isoform X1 n=5 Tax=Rhipicephalus TaxID=34630 RepID=UPI0018957EA4)

HSP 1 Score: 68.2 bits (165), Expect = 4.340e-9
Identity = 40/132 (30.30%), Postives = 65/132 (49.24%), Query Frame = 0

Query:   65 VLSAVCSYLDAENLATLAQVNSAFISHAYDPKHWRRIAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTSSRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVR 196
            V+S+    L  E ++   QV   F   A DP+ W      TW  +  +     L  Y +WR +   RPR+  NG+++ R  + +            P FLV Y R+LRF++ G V+ LTTP+ P+++  ++R
Sbjct:  152 VVSSDLDILSLEAVSKSMQVCRGFYLCARDPELWHTACVRTWGEDCGQ-----LNQYDSWREMYICRPRICYNGVYINRTTYVRHGESSFQDSSYRPCFLVEYFRYLRFFTDGVVLMLTTPDNPYVSLGKLR 278

The following BLAST results are available for this feature:

BLAST of Ggra10530.t1 vs. uniprot

BLAST of Ggra10530.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J0C4	6.900e-143	61.01	F-box only protein 9 n=1 Tax=Gracilariopsis chorda...	[more]
R7QL31	1.100e-103	49.11	F-box domain-containing protein n=1 Tax=Chondrus c...	[more]
A0A7S3EQU2	3.270e-32	30.09	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
F-box only protein 9-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B8CAE	1.910e-10	28.89	F-box only protein 9-like n=1 Tax=Dendronephthya g...	[more]
A0A6S7J265	1.110e-9	28.89	F-box only 9-like (Fragment) n=1 Tax=Paramuricea c...	[more]
F-box only protein 9 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBAE94	1.140e-9	34.18	F-box only protein 9 n=1 Tax=Protopterus annectens...	[more]
F-box only protein 9-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0349F8	2.600e-9	28.88	F-box only protein 9-like n=1 Tax=Xenia sp. Carneg...	[more]
A0A0V1MS49	2.830e-9	25.28	F-box only protein 9 (Fragment) n=4 Tax=Trichinell...	[more]
A0A6G4ZYX0	3.050e-9	31.54	Putative f-box only protein 9 n=8 Tax=Ixodidae Tax...	[more]
F-box only protein 9-like isoform X1 n=5 Tax=Rhipicephalus TaxID=34630 RepID=UPI0018957EA4	4.340e-9	30.30	F-box only protein 9-like isoform X1 n=5 Tax=Rhipi...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 48..145 e-value: 3.1E-8 score: 35.4
None	No IPR available	PANTHER	PTHR12874:SF9	F-BOX ONLY PROTEIN 9	coord: 39..236
IPR045464	F-box protein Hrt3/FBXO9, C-terminal	PFAM	PF19270	FBO_C	coord: 122..278 e-value: 1.5E-16 score: 60.7
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 58..102 e-value: 3.6E-6 score: 26.8
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 55..101 score: 11.246099
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 39..236
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 45..135

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:39557..40576 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10530.t1	Ggra10530.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000904_pilon 39557..40576 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra10530.t1 ID=Ggra10530.t1|Name=Ggra10530.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MIAAEPKTKPWLQLYQTDFANLRLLHKNQYDPLVEQALEQCVSDTPEPEQ
PTQPKLEILALPGEVLSAVCSYLDAENLATLAQVNSAFISHAYDPKHWRR
IAQDTWPSESHRELQKHLYSYKTWRLLCTQRPRLRTNGLFVLRHQFTKTS
SRFAASEPLVPVFLVTYHRFLRFYSSGTVVGLTTPEPPHLAYRRVRDPHG
KPVGSDREEARPVVGSYTFDEQRREVSVVLPIQHPKFPHMRGGHNVMEFT
LSSTVDGAFDRLHLINHFAEMDNSNDSQVASVMFPNDSFVERPFRLIPLH
SFRERIYREFPTDDAVDLAQWFEMKKAARAEQRIKRARR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR045464	Hrt3/FBXO9_C
IPR001810	F-box_dom
IPR045118	FBXO9/FBXO48
IPR036047	F-box-like_dom_sf