Ggra10454.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10454.t1
Unique NameGgra10454.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:352203..352664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr15371
PFAMsbPH_2
Max annot lvl2836|Bacillariophyta
Evalue1.34e-35
EggNOG OGs2CV50@1|root,2RRAK@2759|Eukaryota,2XCDC@2836|Bacillariophyta
DescriptionBacterial PH domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10454Ggra10454Gracilaria gracilis GNS1m malegenetig00000108_pilon 352203..352664 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10454.t1.start1Ggra10454.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 352203..352205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10454.t1.CDS1Ggra10454.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 352203..352664 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10454.t1.exon1Ggra10454.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 352203..352664 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10454.t1.stop1Ggra10454.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 352662..352664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10454.t1Ggra10454.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 352203..352664 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10454.t1 ID=Ggra10454.t1|Name=Ggra10454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=154bp
MSTSPPSKGKKARRYRPTKNVPAQKTKLEPETTFIETAPSKYELIVPTIS
ILTVIGIIPFIAAVARAAWVRYKITSRRISISSGFQGKDQTEIIYRDIES
LKFVRRLGGAADCVISLKDGAKLEIRAVPDFDTIYEYIMEKVDEDAREAS
GSA*
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spliced messenger RNA

>Ggra10454.t1 ID=Ggra10454.t1|Name=Ggra10454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000108_pilon:352203..352664+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACGTCGCCGCCGAGCAAGGGCAAAAAGGCGCGTCGTTACCGGCC
GACCAAGAACGTGCCCGCACAGAAGACAAAGCTGGAGCCGGAAACCACCT
TCATAGAGACCGCCCCCAGCAAGTACGAGCTCATTGTGCCCACCATATCA
ATCCTCACCGTCATTGGAATCATTCCGTTCATAGCGGCTGTGGCGCGCGC
TGCGTGGGTGCGGTACAAGATAACCAGTCGACGAATCTCTATCTCGAGTG
GCTTTCAGGGCAAGGATCAAACCGAGATCATCTACCGCGATATTGAGAGC
CTCAAGTTCGTACGTCGCTTGGGCGGTGCGGCAGATTGCGTCATTTCCCT
CAAGGACGGCGCCAAACTTGAGATTCGCGCAGTCCCAGACTTTGACACCA
TTTACGAATACATTATGGAAAAGGTGGACGAAGACGCTCGGGAAGCGAGT
GGCTCTGCATAG
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protein sequence of Ggra10454.t1

>Ggra10454.t1 ID=Ggra10454.t1|Name=Ggra10454.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MSTSPPSKGKKARRYRPTKNVPAQKTKLEPETTFIETAPSKYELIVPTIS
ILTVIGIIPFIAAVARAAWVRYKITSRRISISSGFQGKDQTEIIYRDIES
LKFVRRLGGAADCVISLKDGAKLEIRAVPDFDTIYEYIMEKVDEDAREAS
GSA*
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mRNA from alignment at tig00000108_pilon:352203..352664+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10454.t1 ID=Ggra10454.t1|Name=Ggra10454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000108_pilon:352203..352664+ (Gracilaria gracilis GNS1m male)
ATGAGTACGTCGCCGCCGAGCAAGGGCAAAAAGGCGCGTCGTTACCGGCC
GACCAAGAACGTGCCCGCACAGAAGACAAAGCTGGAGCCGGAAACCACCT
TCATAGAGACCGCCCCCAGCAAGTACGAGCTCATTGTGCCCACCATATCA
ATCCTCACCGTCATTGGAATCATTCCGTTCATAGCGGCTGTGGCGCGCGC
TGCGTGGGTGCGGTACAAGATAACCAGTCGACGAATCTCTATCTCGAGTG
GCTTTCAGGGCAAGGATCAAACCGAGATCATCTACCGCGATATTGAGAGC
CTCAAGTTCGTACGTCGCTTGGGCGGTGCGGCAGATTGCGTCATTTCCCT
CAAGGACGGCGCCAAACTTGAGATTCGCGCAGTCCCAGACTTTGACACCA
TTTACGAATACATTATGGAAAAGGTGGACGAAGACGCTCGGGAAGCGAGT
GGCTCTGCATAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:352203..352664+

>Ggra10454.t1 ID=Ggra10454.t1|Name=Ggra10454.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00000108_pilon:352203..352664+ (Gracilaria gracilis GNS1m male)
ATGAGTACGTCGCCGCCGAGCAAGGGCAAAAAGGCGCGTCGTTACCGGCC
GACCAAGAACGTGCCCGCACAGAAGACAAAGCTGGAGCCGGAAACCACCT
TCATAGAGACCGCCCCCAGCAAGTACGAGCTCATTGTGCCCACCATATCA
ATCCTCACCGTCATTGGAATCATTCCGTTCATAGCGGCTGTGGCGCGCGC
TGCGTGGGTGCGGTACAAGATAACCAGTCGACGAATCTCTATCTCGAGTG
GCTTTCAGGGCAAGGATCAAACCGAGATCATCTACCGCGATATTGAGAGC
CTCAAGTTCGTACGTCGCTTGGGCGGTGCGGCAGATTGCGTCATTTCCCT
CAAGGACGGCGCCAAACTTGAGATTCGCGCAGTCCCAGACTTTGACACCA
TTTACGAATACATTATGGAAAAGGTGGACGAAGACGCTCGGGAAGCGAGT
GGCTCTGCATAG
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