Ggra10427.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10427.t1
Unique NameGgra10427.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:291717..292303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1BNE9
Preferred nameRPL27B
PFAMsRibosomal_L27e
Max annot lvl4751|Fungi
KEGG koko:K02901
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue4.49e-52
EggNOG OGsCOG2163@1|root,KOG3418@2759|Eukaryota,3A1HM@33154|Opisthokonta,3P2YN@4751|Fungi,1GTXP@112252|Fungi incertae sedis
DescriptionRibosomal L27e protein family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10427Ggra10427Gracilaria gracilis GNS1m malegenetig00000108_pilon 291717..292303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10427.t1Ggra10427.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 291717..292303 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10427.t1.start1Ggra10427.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 291717..291719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10427.t1.CDS1Ggra10427.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 291717..291727 +
Ggra10427.t1.CDS2Ggra10427.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 291883..292303 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10427.t1.exon1Ggra10427.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 291717..291727 +
Ggra10427.t1.exon2Ggra10427.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 291883..292303 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10427.t1.intron1Ggra10427.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 291728..291882 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10427.t1.stop1Ggra10427.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 292301..292303 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10427.t1 ID=Ggra10427.t1|Name=Ggra10427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=144bp
MGKFLKPGKIIILLQGRFAGKKAVIIQNQDNGTNKHSYGHCIVAGVEKYP
RKVKKGMTKRKIAFRSDLTPFVKVVNYNHIMPTRYTLDIEPIKGGIDIAA
FSSPGANADRPEARKDSRVVIKKEFQQRYNAGKNKWFFTPLRF*
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spliced messenger RNA

>Ggra10427.t1 ID=Ggra10427.t1|Name=Ggra10427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp|location=Sequence derived from alignment at tig00000108_pilon:291717..292303+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAATTCTTGAAGCCGGGGAAGATCATCATTCTTCTGCAAGGCAG
ATTCGCCGGAAAGAAGGCGGTCATCATTCAGAACCAGGACAACGGAACAA
ACAAGCATTCTTATGGCCATTGTATTGTAGCCGGTGTTGAGAAGTATCCC
AGAAAGGTGAAAAAGGGCATGACAAAGAGAAAGATTGCCTTCCGATCCGA
TCTCACTCCCTTCGTCAAGGTCGTCAACTACAATCACATCATGCCCACGC
GTTATACTCTCGATATTGAGCCTATCAAGGGTGGGATTGATATTGCTGCC
TTCTCGTCACCGGGTGCTAATGCTGACCGACCAGAGGCTCGTAAGGATTC
GCGCGTTGTTATTAAGAAGGAGTTCCAACAACGTTACAATGCCGGGAAGA
ACAAATGGTTCTTCACGCCTCTGCGATTCTAA
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protein sequence of Ggra10427.t1

>Ggra10427.t1 ID=Ggra10427.t1|Name=Ggra10427.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=144bp
MGKFLKPGKIIILLQGRFAGKKAVIIQNQDNGTNKHSYGHCIVAGVEKYP
RKVKKGMTKRKIAFRSDLTPFVKVVNYNHIMPTRYTLDIEPIKGGIDIAA
FSSPGANADRPEARKDSRVVIKKEFQQRYNAGKNKWFFTPLRF*
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mRNA from alignment at tig00000108_pilon:291717..292303+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10427.t1 ID=Ggra10427.t1|Name=Ggra10427.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp|location=Sequence derived from alignment at tig00000108_pilon:291717..292303+ (Gracilaria gracilis GNS1m male)
ATGGGAAAATTGTAAGTTGGCAGAATCGAGCACAAACGGCAACGCTCATT
TCTGCGCGCGACACACGCCCAAGATCTCATCGGCGGCGAGGAGATGAATC
CAACAAGTAGCTTACTGACCGTCGTGCTCTTTCCGTCATCCTACGCGAAT
CGTAAACGTTCAACAGCTTGAAGCCGGGGAAGATCATCATTCTTCTGCAA
GGCAGATTCGCCGGAAAGAAGGCGGTCATCATTCAGAACCAGGACAACGG
AACAAACAAGCATTCTTATGGCCATTGTATTGTAGCCGGTGTTGAGAAGT
ATCCCAGAAAGGTGAAAAAGGGCATGACAAAGAGAAAGATTGCCTTCCGA
TCCGATCTCACTCCCTTCGTCAAGGTCGTCAACTACAATCACATCATGCC
CACGCGTTATACTCTCGATATTGAGCCTATCAAGGGTGGGATTGATATTG
CTGCCTTCTCGTCACCGGGTGCTAATGCTGACCGACCAGAGGCTCGTAAG
GATTCGCGCGTTGTTATTAAGAAGGAGTTCCAACAACGTTACAATGCCGG
GAAGAACAAATGGTTCTTCACGCCTCTGCGATTCTAA
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Coding sequence (CDS) from alignment at tig00000108_pilon:291717..292303+

>Ggra10427.t1 ID=Ggra10427.t1|Name=Ggra10427.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=432bp|location=Sequence derived from alignment at tig00000108_pilon:291717..292303+ (Gracilaria gracilis GNS1m male)
ATGGGAAAATTCTTGAAGCCGGGGAAGATCATCATTCTTCTGCAAGGCAG
ATTCGCCGGAAAGAAGGCGGTCATCATTCAGAACCAGGACAACGGAACAA
ACAAGCATTCTTATGGCCATTGTATTGTAGCCGGTGTTGAGAAGTATCCC
AGAAAGGTGAAAAAGGGCATGACAAAGAGAAAGATTGCCTTCCGATCCGA
TCTCACTCCCTTCGTCAAGGTCGTCAACTACAATCACATCATGCCCACGC
GTTATACTCTCGATATTGAGCCTATCAAGGGTGGGATTGATATTGCTGCC
TTCTCGTCACCGGGTGCTAATGCTGACCGACCAGAGGCTCGTAAGGATTC
GCGCGTTGTTATTAAGAAGGAGTTCCAACAACGTTACAATGCCGGGAAGA
ACAAATGGTTCTTCACGCCTCTGCGATTCTAA
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